Diff of the two buildlogs: -- --- b1/build.log 2024-02-06 09:05:00.317458747 +0000 +++ b2/build.log 2024-02-06 12:14:12.934717292 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon Feb 5 18:50:07 -12 2024 -I: pbuilder-time-stamp: 1707202207 +I: Current time: Tue Feb 6 23:14:59 +14 2024 +I: pbuilder-time-stamp: 1707210899 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration @@ -17,7 +17,7 @@ I: copying [./ncbi-blast+_2.11.0+ds-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' -gpgv: keyblock resource '/tmp/dpkg-verify-sig.pAR_G5YY/trustedkeys.kbx': General error +gpgv: keyblock resource '/tmp/dpkg-verify-sig.I4gPoXWK/trustedkeys.kbx': General error gpgv: Signature made Mon Feb 1 02:27:36 2021 gpgv: using RSA key 7C3AB9CFD230BD30DD009C591E7091B1F14A64A2 gpgv: Can't check signature: No public key @@ -47,49 +47,80 @@ dpkg-source: info: applying fix_x86isms I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/29881/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/23747/tmp/hooks/D01_modify_environment starting +debug: Running on virt64a. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Feb 6 09:15 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/23747/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/23747/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=3 ' - DISTRIBUTION='bullseye' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.1.4(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=4 ' + DIRSTACK=() + DISTRIBUTION=bullseye + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='1dbfd0dd40064fb1a2df77c3c310e2b2' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='29881' - PS1='# ' - PS2='> ' + INVOCATION_ID=09811da99bfc4824b0cd596bcb3d2d5b + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=23747 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.OhiSMhD4/pbuilderrc_SAGv --distribution bullseye --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.OhiSMhD4/b1 --logfile b1/build.log ncbi-blast+_2.11.0+ds-1.dsc' - SUDO_GID='113' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:3142/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.OhiSMhD4/pbuilderrc_Ysrv --distribution bullseye --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.OhiSMhD4/b2 --logfile b2/build.log ncbi-blast+_2.11.0+ds-1.dsc' + SUDO_GID=114 + SUDO_UID=108 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:3142/ I: uname -a - Linux virt32c 6.1.0-17-armmp-lpae #1 SMP Debian 6.1.69-1 (2023-12-30) armv7l GNU/Linux + Linux i-capture-the-hostname 6.1.0-17-arm64 #1 SMP Debian 6.1.69-1 (2023-12-30) aarch64 GNU/Linux I: ls -l /bin total 3580 -rwxr-xr-x 1 root root 816764 Mar 27 2022 bash @@ -149,7 +180,7 @@ -rwxr-xr-x 1 root root 30732 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 14144 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 76012 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Jan 7 09:26 sh -> dash + lrwxrwxrwx 1 root root 9 Feb 6 09:15 sh -> /bin/bash -rwxr-xr-x 1 root root 22532 Sep 22 2020 sleep -rwxr-xr-x 1 root root 55360 Sep 22 2020 stty -rwsr-xr-x 1 root root 46704 Jan 20 2022 su @@ -175,7 +206,7 @@ -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew -I: user script /srv/workspace/pbuilder/29881/tmp/hooks/D02_print_environment finished +I: user script /srv/workspace/pbuilder/23747/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -309,7 +340,7 @@ Get: 76 http://deb.debian.org/debian bullseye/main armhf libpcre3-dev armhf 2:8.39-13 [587 kB] Get: 77 http://deb.debian.org/debian bullseye/main armhf time armhf 1.9-0.1 [50.8 kB] Get: 78 http://deb.debian.org/debian bullseye/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2+deb11u2 [185 kB] -Fetched 42.0 MB in 2s (26.9 MB/s) +Fetched 42.0 MB in 1s (47.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17486 files and directories currently installed.) @@ -572,8 +603,8 @@ Setting up tzdata (2021a-1+deb11u10) ... Current default time zone: 'Etc/UTC' -Local time is now: Tue Feb 6 06:51:16 UTC 2024. -Universal Time is now: Tue Feb 6 06:51:16 UTC 2024. +Local time is now: Tue Feb 6 09:16:27 UTC 2024. +Universal Time is now: Tue Feb 6 09:16:27 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20180224.1+nmu1) ... @@ -645,7 +676,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/ncbi-blast+-2.11.0+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../ncbi-blast+_2.11.0+ds-1_source.changes +I: user script /srv/workspace/pbuilder/23747/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for bullseye +I: user script /srv/workspace/pbuilder/23747/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/ncbi-blast+-2.11.0+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../ncbi-blast+_2.11.0+ds-1_source.changes dpkg-buildpackage: info: source package ncbi-blast+ dpkg-buildpackage: info: source version 2.11.0+ds-1 dpkg-buildpackage: info: source distribution unstable @@ -677,78 +712,78 @@ done ) ; \ ) ; \ done -/bin/sh: 2: cd: can't cd to c++/src/objects/CMakeLists.txt -/bin/sh: 2: cd: can't cd to c++/src/objects/Makefile.in -/bin/sh: 2: cd: can't cd to c++/src/objects/Makefile.sources -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 2: cd: can't cd to c++/src/objects/nt_sources.cmd -/bin/sh: 2: cd: can't cd to c++/src/objects/nt_sources.sh -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found +/bin/sh: line 2: cd: c++/src/objects/CMakeLists.txt: Not a directory +/bin/sh: line 2: cd: c++/src/objects/Makefile.in: Not a directory +/bin/sh: line 2: cd: c++/src/objects/Makefile.sources: Not a directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 2: cd: c++/src/objects/nt_sources.cmd: Not a directory +/bin/sh: line 2: cd: c++/src/objects/nt_sources.sh: Not a directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory make[1]: [debian/rules:148: override_dh_clean] Error 127 (ignored) rm -rf c++/compilers/dll c++/config.log c++/Makefile rm -f c++/configure.lineno c++/src/objects/blastxml/blastxml.module @@ -779,8 +814,8 @@ checking TeamCity build number... none checking Subversion revision... unknown checking NCBI stable components' version... unknown -checking build system type... armv7l-unknown-linux-gnueabihf -checking host system type... armv7l-unknown-linux-gnueabihf +checking build system type... aarch64-unknown-linux-gnu +checking host system type... aarch64-unknown-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking for gcc... gcc checking whether the C compiler works... yes @@ -792,7 +827,7 @@ checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E -checking for armv7l-unknown-linux-gnueabihf-gcc... no +checking for aarch64-unknown-linux-gnu-gcc... no checking for gcc... gcc checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes @@ -1299,195 +1334,195 @@ configure: ...done configure: updating cache config.cache configure: creating /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/config.status -config.status: creating /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect/Makefile -config.status: creating /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect/services/Makefile -config.status: creating /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/relocate.sh -config.status: creating /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/run_sybase_app.sh -config.status: creating /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib -config.status: creating /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/reconfigure.sh -config.status: creating /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/build-system/Makefile -config.status: creating /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl -config.status: creating /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.metal.tmpl -config.status: creating /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/install.sh -config.status: creating /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/run_with_cd_reporter.py -config.status: creating /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.protobuf -config.status: creating 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/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client/Makefile +config.status: creating /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/Makefile +config.status: creating /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/seqmasks_io/Makefile +config.status: creating /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/align_format/Makefile +config.status: creating /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/align_format/unit_test/Makefile +config.status: creating /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/readers/Makefile +config.status: creating /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/Makefile +config.status: creating /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb/Makefile +config.status: creating /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2/Makefile +config.status: creating /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/Makefile +config.status: creating /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1/Makefile +config.status: creating /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/gicache/Makefile +config.status: creating /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/cache/Makefile +config.status: creating /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/edit/Makefile +config.status: creating /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/format/Makefile +config.status: creating /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/logging/Makefile +config.status: creating /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/db/Makefile +config.status: creating /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/db/sqlite/Makefile +config.status: creating /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect/services/Makefile +config.status: creating /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect/Makefile +config.status: creating /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/cgi/Makefile config.status: creating /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/./Makefile config.status: creating /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc/common/ncbi_build_ver.h config.status: creating /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/common/ncbi_revision.h @@ -1504,7 +1539,7 @@ /bin/ln -f run_with_lock /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/run_with_lock make[3]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/build-system/helpers' make[2]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/build-system/helpers' -Platform not defined for Linux armv7l -- please fix me +Platform not defined for Linux aarch64 -- please fix me project_tree_builder is not found at /net/snowman/vol/export2/win-coremake/App/Ncbi/cppcore/ptb/UNKNOWN/4.8.1/project_tree_builder Will build project_tree_builder locally ********************************************************************** @@ -5641,842 +5676,847 @@ debian/rules override_dh_auto_build-arch make[1]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds' cd c++/BUILD/build && \ - make -j3 -f Makefile.flat all_projects="algo/blast/ app/ objmgr/ objtools/align_format/ objtools/blast/" + make -j4 -f Makefile.flat all_projects="algo/blast/ app/ objmgr/ objtools/align_format/ objtools/blast/" make[2]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build' -/usr/bin/make -w -j3 --jobserver-auth=3,4 -f Makefile.flat ptb_all.real MTARGET= +/usr/bin/make -w -j4 --jobserver-auth=3,4 -f Makefile.flat ptb_all.real MTARGET= make[3]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build' -make[3]: warning: -j3 forced in submake: resetting jobserver mode. -cd corelib/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources -cd util/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources -cd serial/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources +make[3]: warning: -j4 forced in submake: resetting jobserver mode. +cd corelib/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources +cd util/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources +cd serial/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/corelib' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/serial' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +cd serial/datatool/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/serial/datatool' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/serial' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/serial' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: Nothing to be done for 'sources'. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/serial/datatool' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/serial' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/corelib' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +cd algo/blast/composition_adjustment/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/serial' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util' +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/composition_adjustment' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. /usr/bin/make[4] (Makefile.serial.lib): Nothing to be done for `export-headers'. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/corelib' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. /usr/bin/make[4] (Makefile.util.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util' -cd serial/datatool/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/serial/datatool' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +cd util/tables/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/tables' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/serial' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/composition_adjustment' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/serial' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/composition_adjustment' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/serial' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/serial' -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/corelib' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/corelib' -make[4]: Nothing to be done for 'sources'. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/serial/datatool' -cd algo/blast/composition_adjustment/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/corelib' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/composition_adjustment' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/corelib' -/usr/bin/make[4] (Makefile.cserial.lib): Nothing to be done for `export-headers'. -/usr/bin/make[5] (Makefile.precompile): Nothing to be done for `all'. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/composition_adjustment' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/composition_adjustment' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/composition_adjustment' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/corelib' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/composition_adjustment' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/corelib' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/corelib' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/corelib' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -/usr/bin/make[4] (Makefile.composition_adjustment.lib): Nothing to be done for `export-headers'. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/composition_adjustment' -cd util/tables/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/corelib' -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/tables' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/serial' -cd connect/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -/usr/bin/make[4] (Makefile.corelib.lib): Nothing to be done for `export-headers'. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/corelib' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.cserial.lib): Nothing to be done for `export-headers'. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/tables' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/corelib' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/tables' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/corelib' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.composition_adjustment.lib): Nothing to be done for `export-headers'. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/tables' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/composition_adjustment' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +cd connect/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/tables' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/corelib' +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/corelib' +make[6]: warning: -j4 forced in submake: resetting jobserver mode. +make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/corelib' +make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/corelib' +make[6]: warning: -j4 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.tables.lib): Nothing to be done for `export-headers'. +make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/corelib' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/tables' +cd algo/blast/core/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/core' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect' +/usr/bin/make[5] (Makefile.precompile): Nothing to be done for `all'. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -/usr/bin/make[4] (Makefile.test_mt.lib): Nothing to be done for `export-headers'. -/usr/bin/make[4] (Makefile.tables.lib): Nothing to be done for `export-headers'. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/tables' -cd algo/blast/core/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/corelib' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/core' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/corelib' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/corelib' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/core' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. /usr/bin/make[4] (Makefile.connssl.lib): Nothing to be done for `export-headers'. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/corelib' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/core' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/corelib' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/corelib' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/core' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/core' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect' -/usr/bin/make[4] (Makefile.test_boost.lib): Nothing to be done for `export-headers'. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/core' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/core' -/usr/bin/make[4] (Makefile.connect.lib): Nothing to be done for `export-headers'. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/serial' +cd util/sequtil/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/corelib' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/sequtil' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/corelib' /usr/bin/make[4] (Makefile.blast.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/core' -cd util/sequtil/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources +cd objtools/blast/services/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/services' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.connect.lib): Nothing to be done for `export-headers'. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect' -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/sequtil' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.corelib.lib): Nothing to be done for `export-headers'. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect' -/usr/bin/make[4] (Makefile.xxconnect.lib): Nothing to be done for `export-headers'. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/services' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/sequtil' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/services' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/corelib' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/sequtil' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/services' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/sequtil' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/corelib' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/services' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/sequtil' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/corelib' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.xxconnect.lib): Nothing to be done for `export-headers'. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/corelib' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect' /usr/bin/make[4] (Makefile.sequtil.lib): Nothing to be done for `export-headers'. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/sequtil' -cd objtools/blast/services/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/corelib' -cd objmgr/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/services' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objmgr' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -/usr/bin/make[4] (Makefile.xconnect.lib): Nothing to be done for `export-headers'. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +cd objmgr/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect' +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objmgr' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.test_mt.lib): Nothing to be done for `export-headers'. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/services' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.blast_services.lib): Nothing to be done for `export-headers'. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/services' +cd objtools/blast/seqdb_reader/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/corelib' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/corelib' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/corelib' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/corelib' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objmgr' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/services' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.test_boost.lib): Nothing to be done for `export-headers'. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objmgr' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.xconnect.lib): Nothing to be done for `export-headers'. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objmgr' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/services' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/services' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objmgr' -/usr/bin/make[4] (Makefile.xthrserv.lib): Nothing to be done for `export-headers'. -/usr/bin/make[4] (Makefile.blast_services.lib): Nothing to be done for `export-headers'. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/services' -cd objtools/blast/seqdb_reader/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect' /usr/bin/make[4] (Makefile.objmgr.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objmgr' -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -cd objtools/logging/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources +cd objtools/logging/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources +/usr/bin/make[4] (Makefile.seqdb.lib): Nothing to be done for `export-headers'. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader' make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/logging' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +cd objtools/readers/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.xthrserv.lib): Nothing to be done for `export-headers'. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/readers' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/readers' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/logging' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/readers' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/logging' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/readers' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/logging' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/readers' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/logging' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader' -/usr/bin/make[4] (Makefile.seqdb.lib): Nothing to be done for `export-headers'. +/usr/bin/make[4] (Makefile.xobjread.lib): Nothing to be done for `export-headers'. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/readers' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. /usr/bin/make[4] (Makefile.logging.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/logging' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader' -cd objtools/readers/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources -cd objmgr/util/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/readers' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +cd objmgr/util/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/readers' make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objmgr/util' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/readers' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/readers' +/usr/bin/make[4] (Makefile.xobjreadex.lib): Nothing to be done for `export-headers'. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/corelib' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objmgr/util' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +cd objtools/seqmasks_io/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objmgr/util' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/readers' +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/seqmasks_io' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objmgr/util' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/readers' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objmgr/util' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/readers' /usr/bin/make[4] (Makefile.util.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objmgr/util' -cd objtools/seqmasks_io/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources -/usr/bin/make[4] (Makefile.xobjread.lib): Nothing to be done for `export-headers'. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/seqmasks_io' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/readers' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/readers' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/readers' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/readers' +cd algo/blast/dbindex/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/dbindex' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/seqmasks_io' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/seqmasks_io' -cd algo/blast/dbindex/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/seqmasks_io' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/dbindex' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/seqmasks_io' -/usr/bin/make[4] (Makefile.xobjreadex.lib): Nothing to be done for `export-headers'. -/usr/bin/make[4] (Makefile.seqmasks_io.lib): Nothing to be done for `export-headers'. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/seqmasks_io' -cd algo/dustmask/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/dustmask' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/dbindex' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/dbindex' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/dbindex' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/dbindex' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/dustmask' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/dustmask' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/dustmask' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.seqmasks_io.lib): Nothing to be done for `export-headers'. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/seqmasks_io' +cd algo/dustmask/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/dustmask' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. /usr/bin/make[4] (Makefile.xalgoblastdbindex.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/dbindex' -cd algo/winmask/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/dustmask' +cd algo/winmask/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/winmask' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/dustmask' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/readers' -cd objtools/alnmgr/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources +cd objtools/alnmgr/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/dustmask' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/dustmask' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/alnmgr' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -/usr/bin/make[4] (Makefile.xalgodustmask.lib): Nothing to be done for `export-headers'. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/dustmask' -cd algo/blast/api/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/api' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/dustmask' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/winmask' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/winmask' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/winmask' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/alnmgr' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/winmask' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/alnmgr' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/alnmgr' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.xalgodustmask.lib): Nothing to be done for `export-headers'. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/dustmask' +cd algo/blast/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/alnmgr' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/api' /usr/bin/make[4] (Makefile.xalgowinmask.lib): Nothing to be done for `export-headers'. -make[5]: warning: -j3 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/winmask' -cd objtools/blast/gene_info_reader/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/alnmgr' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +cd objtools/blast/gene_info_reader/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/alnmgr' make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/api' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. /usr/bin/make[4] (Makefile.alnmgr.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/alnmgr' -cd util/compress/api/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/compress/api' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -/usr/bin/make[4] (Makefile.xblast.lib): Nothing to be done for `export-headers'. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/api' -cd objtools/data_loaders/genbank/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources +cd util/compress/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/compress/api' +cd objtools/data_loaders/genbank/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/api' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/compress/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/compress/api' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/api' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/compress/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/compress/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/api' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/api' /usr/bin/make[4] (Makefile.gene_info.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader' -cd objtools/data_loaders/genbank/cache/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' +cd objtools/data_loaders/genbank/cache/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/cache' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -/usr/bin/make[4] (Makefile.compress.lib): Nothing to be done for `export-headers'. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/compress/api' -cd objtools/data_loaders/genbank/id1/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources +/usr/bin/make[4] (Makefile.xblast.lib): Nothing to be done for `export-headers'. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/api' +cd objtools/data_loaders/genbank/id1/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/compress/api' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/compress/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/compress/api' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/compress/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/cache' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -/usr/bin/make[4] (Makefile.ncbi_xreader.lib): Nothing to be done for `export-headers'. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/cache' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.compress.lib): Nothing to be done for `export-headers'. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/compress/api' +cd objtools/data_loaders/genbank/id2/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources +/usr/bin/make[4] (Makefile.ncbi_xreader.lib): Nothing to be done for `export-headers'. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/cache' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/cache' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' /usr/bin/make[4] (Makefile.ncbi_xreader_cache.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/cache' -cd objtools/data_loaders/genbank/id2/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources +cd connect/services/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' /usr/bin/make[4] (Makefile.ncbi_xreader_id1.lib): Nothing to be done for `export-headers'. -/usr/bin/make[4] (Makefile.ncbi_xloader_genbank.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' -cd connect/services/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect/services' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect/services' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +cd objtools/pubseq_gateway/client/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect/services' +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.ncbi_xloader_genbank.lib): Nothing to be done for `export-headers'. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect/services' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect/services' -/usr/bin/make[4] (Makefile.xconnserv.lib): Nothing to be done for `export-headers'. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' -/usr/bin/make[4] (Makefile.ncbi_xreader_id2.lib): Nothing to be done for `export-headers'. -cd objtools/pubseq_gateway/client/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' -cd cgi/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/cgi' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect/services' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect/services' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect/services' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect/services' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/cgi' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect/services' +/usr/bin/make[4] (Makefile.ncbi_xreader_id2.lib): Nothing to be done for `export-headers'. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' +cd cgi/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/cgi' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/cgi' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect/services' +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/cgi' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -/usr/bin/make[4] (Makefile.ncbi_xcache_netcache.lib): Nothing to be done for `export-headers'. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/cgi' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect/services' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect/services' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect/services' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.xconnserv.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.psg_client.lib): Nothing to be done for `export-headers'. -/usr/bin/make[4] (Makefile.cgi.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect/services' -cd html/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources +cd html/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect/services' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/html' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/cgi' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect/services' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/cgi' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect/services' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/cgi' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -/usr/bin/make[4] (Makefile.ncbi_xblobstorage_netcache.lib): Nothing to be done for `export-headers'. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect/services' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/cgi' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/html' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -/usr/bin/make[4] (Makefile.fcgi.lib): Nothing to be done for `export-headers'. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.ncbi_xcache_netcache.lib): Nothing to be done for `export-headers'. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/html' +/usr/bin/make[4] (Makefile.cgi.lib): Nothing to be done for `export-headers'. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/html' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect/services' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/cgi' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/html' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect/services' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/cgi' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect/services' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/cgi' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect/services' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/cgi' /usr/bin/make[4] (Makefile.html.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/html' -cd objtools/align_format/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources +cd objtools/align_format/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/align_format' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' +cd objtools/blast/blastdb_format/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources +/usr/bin/make[4] (Makefile.ncbi_xblobstorage_netcache.lib): Nothing to be done for `export-headers'. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' +/usr/bin/make[4] (Makefile.fcgi.lib): Nothing to be done for `export-headers'. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/align_format' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect/services' -cd objtools/blast/blastdb_format/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/align_format' -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/align_format' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/align_format' +/usr/bin/make[4] (Makefile.blastdb_format.lib): Nothing to be done for `export-headers'. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' +cd objtools/data_loaders/blastdb/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. /usr/bin/make[4] (Makefile.align_format.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/align_format' -cd objtools/data_loaders/blastdb/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/cgi' -cd algo/blast/blastinput/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources +cd algo/blast/blastinput/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/blastinput' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' -/usr/bin/make[4] (Makefile.blastdb_format.lib): Nothing to be done for `export-headers'. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/blastinput' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -cd algo/blast/proteinkmer/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/proteinkmer' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/blastinput' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/blastinput' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/blastinput' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/blastinput' /usr/bin/make[4] (Makefile.ncbi_xloader_blastdb.lib): Nothing to be done for `export-headers'. -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/blastinput' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/proteinkmer' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/proteinkmer' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect/services' +cd algo/blast/proteinkmer/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/proteinkmer' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/proteinkmer' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/proteinkmer' /usr/bin/make[4] (Makefile.blastinput.lib): Nothing to be done for `export-headers'. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/blastinput' -cd util/xregexp/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources +cd util/xregexp/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/xregexp' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. /usr/bin/make[4] (Makefile.ncbi_xloader_blastdb_rmt.lib): Nothing to be done for `export-headers'. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/proteinkmer' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/proteinkmer' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/proteinkmer' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/proteinkmer' /usr/bin/make[4] (Makefile.proteinkmer.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/proteinkmer' -cd objtools/edit/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/edit' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +cd objtools/edit/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/xregexp' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/edit' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/xregexp' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/xregexp' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/xregexp' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/edit' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/edit' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/edit' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. /usr/bin/make[4] (Makefile.xregexp.lib): Nothing to be done for `export-headers'. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/edit' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/xregexp' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/cgi' +cd objtools/cleanup/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/xregexp' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' -cd objtools/cleanup/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/xregexp' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/cleanup' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/edit' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/edit' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/xregexp' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/edit' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/xregexp' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/edit' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/cleanup' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/cleanup' /usr/bin/make[4] (Makefile.edit.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/edit' -cd objtools/format/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/format' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. /usr/bin/make[4] (Makefile.xregexp_template_tester.lib): Nothing to be done for `export-headers'. +cd objtools/format/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/cleanup' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' +cd algo/blast/format/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/format' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/cleanup' +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/format' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.cleanup.lib): Nothing to be done for `export-headers'. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/cleanup' +cd algo/blast/blastinput/unit_test/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/blastinput/unit_test' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/format' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/cleanup' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/format' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/cleanup' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/format' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/format' -/usr/bin/make[4] (Makefile.cleanup.lib): Nothing to be done for `export-headers'. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/cleanup' -cd algo/blast/format/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/format' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -/usr/bin/make[4] (Makefile.xformat.lib): Nothing to be done for `export-headers'. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/format' -cd algo/blast/blastinput/unit_test/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/blastinput/unit_test' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/xregexp' -cd algo/blast/dbindex/makeindex/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/dbindex/makeindex' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/format' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/format' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/blastinput/unit_test' -cd algo/blast/igblast/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/format' -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/igblast' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +cd algo/blast/dbindex/makeindex/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/format' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/format' -make[4]: Nothing to be done for 'sources'. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/dbindex/makeindex' -cd objtools/simple/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/simple' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.xformat.lib): Nothing to be done for `export-headers'. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/dbindex/makeindex' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/format' +cd algo/blast/igblast/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources /usr/bin/make[4] (Makefile.xblastformat.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/format' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/igblast' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -cd algo/blast/proteinkmer/unit_test/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources +cd objtools/simple/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/igblast' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/simple' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[4]: Nothing to be done for 'sources'. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/dbindex/makeindex' +cd algo/blast/proteinkmer/unit_test/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/proteinkmer/unit_test' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/igblast' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/igblast' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/igblast' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/igblast' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/simple' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/xregexp' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/proteinkmer/unit_test' +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/igblast' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/simple' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/simple' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +cd algo/blast/unit_tests/blast_format/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/blast_format' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/simple' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/simple' /usr/bin/make[4] (Makefile.igblast.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/igblast' -cd algo/blast/unit_tests/blast_format/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/blast_format' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +cd algo/blast/unit_tests/blastdb/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/blastdb' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. /usr/bin/make[4] (Makefile.xobjsimple.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/simple' -cd algo/blast/unit_tests/blastdb/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/blastdb' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +cd objtools/blast/seqdb_writer/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/blast_format' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -cd objtools/blast/seqdb_writer/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +cd algo/blast/unit_tests/seqdb_reader/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/blastdb' -cd algo/blast/unit_tests/seqdb_reader/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +cd app/blast/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer' /usr/bin/make[4] (Makefile.blast_unit_test_util.lib): Nothing to be done for `export-headers'. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make[4] (Makefile.writedb.lib): Nothing to be done for `export-headers'. -/usr/bin/make[4] (Makefile.seqalign_util.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer' -cd app/blast/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -cd app/blastdb/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources +cd app/blastdb/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast/Makefile.legacy_blast builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast -w -j3 --jobserver-auth=9,10 all -make[6]: warning: -j3 forced in submake: resetting jobserver mode. -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast/legacy_blast.pl /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin -/bin/ln -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast/legacy_blast.pl /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/legacy_blast.pl -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast/Makefile.update_blastdb builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast -w -j3 --jobserver-auth=9,10 all -make[6]: warning: -j3 forced in submake: resetting jobserver mode. -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast/update_blastdb.pl /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin -/bin/ln -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast/update_blastdb.pl /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/update_blastdb.pl -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.seqalign_util.lib): Nothing to be done for `export-headers'. make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast/Makefile.get_species_taxids builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast -w -j3 --jobserver-auth=9,10 all -make[6]: warning: -j3 forced in submake: resetting jobserver mode. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' -cd app/dustmasker/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast/Makefile.legacy_blast builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast -w -j4 --jobserver-auth=9,10 all +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' +cd app/dustmasker/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/dustmasker' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/dustmasker' -cd algo/segmask/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources +cd algo/segmask/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/segmask' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast/get_species_taxids.sh /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin -/bin/ln -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast/get_species_taxids.sh /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/get_species_taxids.sh -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/segmask' make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast/legacy_blast.pl /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin +/bin/ln -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast/legacy_blast.pl /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/legacy_blast.pl make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/segmask' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/segmask' make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' +make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' +make[6]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/segmask' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast/Makefile.cleanup-blastdb-volumes builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast -w -j3 --jobserver-auth=9,10 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast/Makefile.update_blastdb builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast -w -j4 --jobserver-auth=9,10 all make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/segmask' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. /usr/bin/make[4] (Makefile.xalgosegmask.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/segmask' -cd app/segmasker/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources +cd app/segmasker/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/segmasker' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/segmasker' -cd app/winmasker/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources +cd app/winmasker/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/winmasker' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast/cleanup-blastdb-volumes.py /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin -/bin/ln -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast/cleanup-blastdb-volumes.py /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/cleanup-blastdb-volumes.py +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast/update_blastdb.pl /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin +/bin/ln -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast/update_blastdb.pl /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/update_blastdb.pl make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/winmasker' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -/usr/bin/make[4] (Makefile.blast_app_util.lib): Nothing to be done for `export-headers'. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' +make[6]: warning: -j4 forced in submake: resetting jobserver mode. +make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' +make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' +make[6]: warning: -j4 forced in submake: resetting jobserver mode. +make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast/Makefile.get_species_taxids builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast -w -j4 --jobserver-auth=9,10 all make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/winmasker' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/winmasker' make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/winmasker' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/winmasker' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/winmasker/Makefile.windowmasker_2.2.22_adapter builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/winmasker -w -j3 --jobserver-auth=9,10 all -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/winmasker/Makefile.windowmasker_2.2.22_adapter builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/winmasker -w -j4 --jobserver-auth=9,10 all +make[6]: warning: -j4 forced in submake: resetting jobserver mode. +make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast/get_species_taxids.sh /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin +/bin/ln -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast/get_species_taxids.sh /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/get_species_taxids.sh +make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' +make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' +make[6]: warning: -j4 forced in submake: resetting jobserver mode. +make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' +make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' +make[6]: warning: -j4 forced in submake: resetting jobserver mode. +make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast/Makefile.cleanup-blastdb-volumes builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast -w -j4 --jobserver-auth=9,10 all make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/winmasker' /bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/winmasker/windowmasker_2.2.22_adapter.py /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin /bin/ln -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/winmasker/windowmasker_2.2.22_adapter.py /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/windowmasker_2.2.22_adapter.py make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/winmasker' +make[6]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/winmasker' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/winmasker' -cd objmgr/split/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources +cd objmgr/split/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objmgr/split' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objmgr/split' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objmgr/split' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objmgr/split' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' +cd objtools/align_format/unit_test/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objmgr/split' +make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast/cleanup-blastdb-volumes.py /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin +/bin/ln -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast/cleanup-blastdb-volumes.py /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/cleanup-blastdb-volumes.py +make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/align_format/unit_test' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. /usr/bin/make[4] (Makefile.id2_split.lib): Nothing to be done for `export-headers'. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objmgr/split' -cd objtools/align_format/unit_test/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/align_format/unit_test' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +cd objtools/blast/blastdb_format/unit_test/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/align_format/unit_test' -cd objtools/blast/blastdb_format/unit_test/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources +cd objtools/blast/gene_info_reader/demo/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/demo' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' -cd objtools/blast/gene_info_reader/demo/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/demo' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +cd objtools/blast/gene_info_reader/unit_test/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/demo' -cd objtools/blast/gene_info_reader/unit_test/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +cd objtools/blast/seqdb_reader/demo/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.blast_app_util.lib): Nothing to be done for `export-headers'. make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' -cd objtools/blast/seqdb_reader/demo/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. make[4]: Nothing to be done for 'sources'. +cd objtools/blast/seqdb_reader/test/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' -cd objtools/blast/seqdb_reader/test/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/test' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +cd objtools/blast/seqdb_writer/unit_test/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/test' -cd objtools/blast/seqdb_writer/unit_test/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' -cd objtools/blast/services/unit_test/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources +cd objtools/blast/services/unit_test/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/services/unit_test' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/services/unit_test' -cd corelib/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=corelib UNIX_PROJ="" sources= configurables=configurables.null +cd corelib/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=corelib UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/corelib' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/corelib' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/corelib' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/corelib' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/corelib' /usr/bin/make[4] (Makefile.corelib.lib): Nothing to be done for `all'. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/corelib' -cd algo/blast/composition_adjustment/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=composition_adjustment UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' +cd algo/blast/composition_adjustment/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=composition_adjustment UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/composition_adjustment' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/corelib' +cd util/tables/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=tables UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/tables' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/composition_adjustment' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/composition_adjustment' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/composition_adjustment' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/composition_adjustment' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/composition_adjustment TMPL=composition_adjustment -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/composition_adjustment/compo_heap.c:137:1: warning: 's_CompoHeapIsValid' defined but not used [-Wunused-function] - 137 | s_CompoHeapIsValid(BlastCompo_HeapRecord * heapArray, int i, int n) - | ^~~~~~~~~~~~~~~~~~ -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -cd util/tables/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=tables UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/tables' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/composition_adjustment TMPL=composition_adjustment -w -j4 --jobserver-auth=7,8 all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/tables' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/tables' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/tables' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/tables' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/util/tables TMPL=tables -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/util/tables TMPL=tables -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/composition_adjustment/compo_heap.c:137:1: warning: 's_CompoHeapIsValid' defined but not used [-Wunused-function] + 137 | s_CompoHeapIsValid(BlastCompo_HeapRecord * heapArray, int i, int n) + | ^~~~~~~~~~~~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/composition_adjustment' /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/composition_adjustment/compo_heap.c -o compo_heap.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/composition_adjustment/compo_mode_condition.c -o compo_mode_condition.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/composition_adjustment/composition_adjustment.c -o composition_adjustment.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/composition_adjustment/matrix_frequency_data.c -o matrix_frequency_data.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/composition_adjustment/nlm_linear_algebra.c -o nlm_linear_algebra.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+dsmake[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/tables' +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/composition_adjustment/redo_alignment.c:200:1: warning: 's_DistinctAlignmentsLength' defined but not used [-Wunused-function] + 200 | s_DistinctAlignmentsLength(BlastCompo_Alignment * list) + | ^~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/composition_adjustment/redo_alignment.c:185:1: warning: 's_AlignmentsAreSorted' defined but not used [-Wunused-function] + 185 | s_AlignmentsAreSorted(BlastCompo_Alignment * alignments) + | ^~~~~~~~~~~~~~~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/tables' /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/util/tables/raw_scoremat.c -o raw_scoremat.o /bin/rm -f libtables.so .libtables.so.stamp /usr/bin/g++ -std=gnu++14 -shared -o libtables.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC raw_scoremat.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -ldl -lm -lpthread @@ -6484,25 +6524,19 @@ /bin/ln -f libtables.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libtables.so /bin/ln -f .tables.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.tables.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/tables' -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/composition_adjustment/redo_alignment.c:200:1: warning: 's_DistinctAlignmentsLength' defined but not used [-Wunused-function] - 200 | s_DistinctAlignmentsLength(BlastCompo_Alignment * list) - | ^~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/composition_adjustment/redo_alignment.c:185:1: warning: 's_AlignmentsAreSorted' defined but not used [-Wunused-function] - 185 | s_AlignmentsAreSorted(BlastCompo_Alignment * alignments) - | ^~~~~~~~~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/tables' -cd connect/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xconnect UNIX_PROJ="" sources= configurables=configurables.null +cd connect/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xconnect UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect TMPL=xconnect -w -j3 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect TMPL=xconnect -w -j4 --jobserver-auth=7,8 all /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/run_with_lock: Adjusting base from make_xconnect to make__connect_common per /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/.#lock-map. -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_servicep.h:38, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_lbsmd.h:37, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_lbsmd_stub.c:33: @@ -6575,9 +6609,6 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:566:9: note: in expansion of macro 'CORE_DATAF_X' 566 | CORE_DATAF_X(109, level, data, size, | ^~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:62, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connector.c:34: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connector.c: In function 'METACONN_Remove': /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -6605,28 +6636,9 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connector.c:41:5: note: in expansion of macro 'CORE_LOGF_X' - 41 | CORE_LOGF_X(subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connector.c:63:13: note: in expansion of macro 'METACONN_LOG' - 63 | METACONN_LOG(34, eLOG_Error, - | ^~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:606:9: note: in expansion of macro 'CORE_LOGF_X' 606 | CORE_LOGF_X(1, eLOG_Error, | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connector.c: In function 'METACONN_Insert': /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c: In function 's_InitAPI_': /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:899:32: warning: format '%p' expects argument of type 'void *', but argument 3 has type 'FSSLSetup' {aka 'const struct SOCKSSL_struct * (* volatile)(void)'} [-Wformat=] 899 | sprintf(buf, "%p()", s_SSLSetup); @@ -6667,24 +6679,6 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:911:13: note: in expansion of macro 'CORE_LOG' 911 | CORE_LOG(eLOG_Critical, "Secure Socket Layer (SSL) has not" | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connector.c:41:5: note: in expansion of macro 'CORE_LOGF_X' - 41 | CORE_LOGF_X(subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connector.c:92:9: note: in expansion of macro 'METACONN_LOG' - 92 | METACONN_LOG(33, eLOG_Error, - | ^~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c: In function 's_gethostname': /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -6843,6 +6837,46 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:1835:17: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' 1835 | CORE_LOGF_ERRNO_EXX(5, eLOG_Warning, | ^~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:62, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connector.c:34: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connector.c: In function 'METACONN_Remove': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connector.c:41:5: note: in expansion of macro 'CORE_LOGF_X' + 41 | CORE_LOGF_X(subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connector.c:63:13: note: in expansion of macro 'METACONN_LOG' + 63 | METACONN_LOG(34, eLOG_Error, + | ^~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connector.c: In function 'METACONN_Insert': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connector.c:41:5: note: in expansion of macro 'CORE_LOGF_X' + 41 | CORE_LOGF_X(subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connector.c:92:9: note: in expansion of macro 'METACONN_LOG' + 92 | METACONN_LOG(33, eLOG_Error, + | ^~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c: In function 's_Poll_': /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -6991,6 +7025,7 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:3586:17: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' 3586 | CORE_LOGF_ERRNO_EXX(12, sock->log != eOff | ^~~~~~~~~~~~~~~~~~~ +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c: In function 's_Shutdown': /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -7007,6 +7042,7 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:3760:21: note: in expansion of macro 'CORE_LOGF_X' 3760 | CORE_LOGF_X(13, !tv || (tv->tv_sec | tv->tv_usec) | ^~~~~~~~~~~ +cd util/sequtil/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=sequtil UNIX_PROJ="" sources= configurables=configurables.null /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -7037,6 +7073,8 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:3847:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' 3847 | CORE_LOGF_ERRNO_EXX(16, eLOG_Trace, | ^~~~~~~~~~~~~~~~~~~ +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/sequtil' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c: In function 's_Close_': /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -7219,23 +7257,9 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:4409:17: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' 4409 | CORE_LOGF_ERRNO_EXX(26, sock->log != eOff | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c: In function 's_Create': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:4517:9: note: in expansion of macro 'CORE_LOGF_ERRNO_X' - 4517 | CORE_LOGF_ERRNO_X(27, eLOG_Error, errno, - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c: In function 's_CreateOnTop': +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:62, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:34: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c: In function 'x_ReInit': /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -7248,24 +7272,36 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:4579:9: note: in expansion of macro 'CORE_LOGF_X' - 4579 | CORE_LOGF_X(47, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:70:7: note: in expansion of macro 'CORE_LOGF_X' + 70 | CORE_LOGF_X(subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:81:39: note: in expansion of macro 'CONN_LOG_EX' + 81 | #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:282:13: note: in expansion of macro 'CONN_LOG' + 282 | CONN_LOG(4, ReInit, eLOG_Critical, "Partial re-init not allowed"); + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:4637:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 4637 | CORE_LOGF_ERRNO_EXX(148, eLOG_Error, - | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:70:7: note: in expansion of macro 'CORE_LOGF_X' + 70 | CORE_LOGF_X(subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:81:39: note: in expansion of macro 'CONN_LOG_EX' + 81 | #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:311:21: note: in expansion of macro 'CONN_LOG' + 311 | CONN_LOG(3, Close, + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -7278,24 +7314,41 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:4681:17: note: in expansion of macro 'CORE_LOGF_X' - 4681 | CORE_LOGF_X(48, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:70:7: note: in expansion of macro 'CORE_LOGF_X' + 70 | CORE_LOGF_X(subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:81:39: note: in expansion of macro 'CONN_LOG_EX' + 81 | #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:315:21: note: in expansion of macro 'CONN_LOG' + 315 | CONN_LOG(3, ReInit, eLOG_Error, + | ^~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/sequtil' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/sequtil' +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c: In function 's_Create': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c: In function 's_Open': /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:4730:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 4730 | CORE_LOGF_ERRNO_EXX(50, eLOG_Error, - | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:70:7: note: in expansion of macro 'CORE_LOGF_X' + 70 | CORE_LOGF_X(subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:81:39: note: in expansion of macro 'CONN_LOG_EX' + 81 | #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:395:9: note: in expansion of macro 'CONN_LOG' + 395 | CONN_LOG(5, Open, eLOG_Error, "Failed to open connection"); + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -7308,24 +7361,33 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' 167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:4747:9: note: in expansion of macro 'CORE_LOGF_ERRNO_X' - 4747 | CORE_LOGF_ERRNO_X(49, eLOG_Error, errno, +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:4517:9: note: in expansion of macro 'CORE_LOGF_ERRNO_X' + 4517 | CORE_LOGF_ERRNO_X(27, eLOG_Error, errno, | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c: In function 's_CreateOnTop': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c: In function 'CONN_CreateEx': /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:4834:17: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 4834 | CORE_LOGF_ERRNO_EXX(132, eLOG_Error, - | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:70:7: note: in expansion of macro 'CORE_LOGF_X' + 70 | CORE_LOGF_X(subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:81:39: note: in expansion of macro 'CONN_LOG_EX' + 81 | #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:437:9: note: in expansion of macro 'CONN_LOG' + 437 | CONN_LOG(2, Create, eLOG_Error, "NULL connector"); + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c: In function 'CONN_ReInit': /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -7335,73 +7397,65 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:159:5: note: in expansion of macro 'DO_CORE_LOG' - 159 | DO_CORE_LOG(0, 0, level, \ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:4856:17: note: in expansion of macro 'CORE_LOGF' - 4856 | CORE_LOGF(eLOG_Trace, - | ^~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:70:7: note: in expansion of macro 'CORE_LOGF_X' + 70 | CORE_LOGF_X(subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:104:11: note: in expansion of macro 'CONN_LOG_EX' + 104 | CONN_LOG_EX(subcode, func_name, eLOG_Error, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:117:34: note: in expansion of macro 'CONN_NOT_NULL_EX' + 117 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) + | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:459:5: note: in expansion of macro 'CONN_NOT_NULL' + 459 | CONN_NOT_NULL(1, ReInit); | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:4885:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 4885 | CORE_LOGF_ERRNO_EXX(153, eLOG_Warning, - | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:4896:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 4896 | CORE_LOGF_ERRNO_EXX(138, eLOG_Warning, - | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:4579:9: note: in expansion of macro 'CORE_LOGF_X' + 4579 | CORE_LOGF_X(47, eLOG_Error, + | ^~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connutil.c:35: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connssl.h:47:25: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] + 47 | eNcbiCred_MbedTls = 0xC12CC16C + | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:4919:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 4919 | CORE_LOGF_ERRNO_EXX(124, eLOG_Warning, - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:70:7: note: in expansion of macro 'CORE_LOGF_X' + 70 | CORE_LOGF_X(subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:111:11: note: in expansion of macro 'CONN_LOG_EX' + 111 | CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:117:34: note: in expansion of macro 'CONN_NOT_NULL_EX' + 117 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) + | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:459:5: note: in expansion of macro 'CONN_NOT_NULL' + 459 | CONN_NOT_NULL(1, ReInit); | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:4937:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 4937 | CORE_LOGF_ERRNO_EXX(43, eLOG_Warning, - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c: In function 's_CreateListening': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c: In function 'CONN_GetType': /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -7414,54 +7468,82 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:5011:13: note: in expansion of macro 'CORE_LOGF_X' - 5011 | CORE_LOGF_X(144, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:70:7: note: in expansion of macro 'CORE_LOGF_X' + 70 | CORE_LOGF_X(subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:104:11: note: in expansion of macro 'CONN_LOG_EX' + 104 | CONN_LOG_EX(subcode, func_name, eLOG_Error, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:467:5: note: in expansion of macro 'CONN_NOT_NULL_EX' + 467 | CONN_NOT_NULL_EX(6, GetType, 0); + | ^~~~~~~~~~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/sequtil' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:5053:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 5053 | CORE_LOGF_ERRNO_EXX(34, eLOG_Error, - | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:70:7: note: in expansion of macro 'CORE_LOGF_X' + 70 | CORE_LOGF_X(subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:111:11: note: in expansion of macro 'CONN_LOG_EX' + 111 | CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:467:5: note: in expansion of macro 'CONN_NOT_NULL_EX' + 467 | CONN_NOT_NULL_EX(6, GetType, 0); + | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c: In function 'CONN_Description': /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:5099:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 5099 | CORE_LOGF_ERRNO_EXX(35, eLOG_Error, - | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:70:7: note: in expansion of macro 'CORE_LOGF_X' + 70 | CORE_LOGF_X(subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:104:11: note: in expansion of macro 'CONN_LOG_EX' + 104 | CONN_LOG_EX(subcode, func_name, eLOG_Error, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:476:5: note: in expansion of macro 'CONN_NOT_NULL_EX' + 476 | CONN_NOT_NULL_EX(7, Description, 0); + | ^~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:5154:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 5154 | CORE_LOGF_ERRNO_EXX(36, error != SOCK_EADDRINUSE - | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:70:7: note: in expansion of macro 'CORE_LOGF_X' + 70 | CORE_LOGF_X(subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:111:11: note: in expansion of macro 'CONN_LOG_EX' + 111 | CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:476:5: note: in expansion of macro 'CONN_NOT_NULL_EX' + 476 | CONN_NOT_NULL_EX(7, Description, 0); + | ^~~~~~~~~~~~~~~~ +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/sequtil' /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -7474,8 +7556,8 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:5175:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 5175 | CORE_LOGF_ERRNO_EXX(150, eLOG_Error, +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:4637:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 4637 | CORE_LOGF_ERRNO_EXX(148, eLOG_Error, | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -7483,15 +7565,16 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:5245:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 5245 | CORE_LOGF_ERRNO_EXX(37, eLOG_Error, - | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:4681:17: note: in expansion of macro 'CORE_LOGF_X' + 4681 | CORE_LOGF_X(48, eLOG_Error, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c: In function 'CONN_GetPosition': /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -7504,10 +7587,15 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:5312:9: note: in expansion of macro 'CORE_LOGF_X' - 5312 | CORE_LOGF_X(115, eLOG_Note, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c: In function 's_Accept': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:70:7: note: in expansion of macro 'CORE_LOGF_X' + 70 | CORE_LOGF_X(subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:104:11: note: in expansion of macro 'CONN_LOG_EX' + 104 | CONN_LOG_EX(subcode, func_name, eLOG_Error, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:488:5: note: in expansion of macro 'CONN_NOT_NULL_EX' + 488 | CONN_NOT_NULL_EX(30, GetPosition, 0); + | ^~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -7520,9 +7608,15 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:5349:9: note: in expansion of macro 'CORE_LOGF_X' - 5349 | CORE_LOGF_X(39, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:70:7: note: in expansion of macro 'CORE_LOGF_X' + 70 | CORE_LOGF_X(subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:111:11: note: in expansion of macro 'CONN_LOG_EX' + 111 | CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:488:5: note: in expansion of macro 'CONN_NOT_NULL_EX' + 488 | CONN_NOT_NULL_EX(30, GetPosition, 0); + | ^~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -7535,8 +7629,8 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:5405:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 5405 | CORE_LOGF_ERRNO_EXX(40, eLOG_Error, +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:4730:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 4730 | CORE_LOGF_ERRNO_EXX(50, eLOG_Error, | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -7544,45 +7638,51 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:5464:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 5464 | CORE_LOGF_ERRNO_EXX(41, eLOG_Error, - | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:70:7: note: in expansion of macro 'CORE_LOGF_X' + 70 | CORE_LOGF_X(subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:501:9: note: in expansion of macro 'CONN_LOG_EX' + 501 | CONN_LOG_EX(31, GetPosition, eLOG_Error, errbuf, 0); + | ^~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_servicep.h:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connutil.c:37: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] + 91 | fSERV_IncludePrivate = 0x80000000, + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] + 92 | fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */ + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c: In function 'CONN_SetTimeout': /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:5521:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 5521 | CORE_LOGF_ERRNO_EXX(42, eLOG_Warning, - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:70:7: note: in expansion of macro 'CORE_LOGF_X' + 70 | CORE_LOGF_X(subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:104:11: note: in expansion of macro 'CONN_LOG_EX' + 104 | CONN_LOG_EX(subcode, func_name, eLOG_Error, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:117:34: note: in expansion of macro 'CONN_NOT_NULL_EX' + 117 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) + | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:517:5: note: in expansion of macro 'CONN_NOT_NULL' + 517 | CONN_NOT_NULL(8, SetTimeout); | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:5532:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 5532 | CORE_LOGF_ERRNO_EXX(152, eLOG_Warning, - | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -7592,28 +7692,36 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:5543:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 5543 | CORE_LOGF_ERRNO_EXX(137, eLOG_Warning, - | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:4747:9: note: in expansion of macro 'CORE_LOGF_ERRNO_X' + 4747 | CORE_LOGF_ERRNO_X(49, eLOG_Error, errno, + | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:70:7: note: in expansion of macro 'CORE_LOGF_X' + 70 | CORE_LOGF_X(subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:111:11: note: in expansion of macro 'CONN_LOG_EX' + 111 | CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:117:34: note: in expansion of macro 'CONN_NOT_NULL_EX' + 117 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) + | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:517:5: note: in expansion of macro 'CONN_NOT_NULL' + 517 | CONN_NOT_NULL(8, SetTimeout); | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:5563:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 5563 | CORE_LOGF_ERRNO_EXX(128, eLOG_Warning, - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c: In function 's_CloseListening': /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -7626,25 +7734,34 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:5615:9: note: in expansion of macro 'CORE_LOGF_X' - 5615 | CORE_LOGF_X(44, eLOG_Note, +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:70:7: note: in expansion of macro 'CORE_LOGF_X' + 70 | CORE_LOGF_X(subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:557:9: note: in expansion of macro 'CONN_LOG_EX' + 557 | CONN_LOG_EX(9, SetTimeout, eLOG_Error, errbuf, eIO_InvalidArg); | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c: In function 'CONN_GetTimeout': /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:5641:17: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 5641 | CORE_LOGF_ERRNO_EXX(45, eLOG_Error, - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c: In function 's_RecvMsg': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:70:7: note: in expansion of macro 'CORE_LOGF_X' + 70 | CORE_LOGF_X(subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:104:11: note: in expansion of macro 'CONN_LOG_EX' + 104 | CONN_LOG_EX(subcode, func_name, eLOG_Error, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:572:5: note: in expansion of macro 'CONN_NOT_NULL_EX' + 572 | CONN_NOT_NULL_EX(10, GetTimeout, 0); + | ^~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -7656,10 +7773,17 @@ | ^~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:5727:17: note: in expansion of macro 'CORE_LOGF_X' - 5727 | CORE_LOGF_X(20, eLOG_Error, - | ^~~~~~~~~~~ + | /usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/util/sequtil TMPL=sequtil -w -j4 --jobserver-auth=7,8 all + ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:70:7: note: in expansion of macro 'CORE_LOGF_X' + 70 | CORE_LOGF_X(subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:111:11: note: in expansion of macro 'CONN_LOG_EX' + 111 | CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:572:5: note: in expansion of macro 'CONN_NOT_NULL_EX' + 572 | CONN_NOT_NULL_EX(10, GetTimeout, 0); + | ^~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -7672,25 +7796,9 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:5776:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 5776 | CORE_LOGF_ERRNO_EXX(94, eLOG_Trace, - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c: In function 's_SendMsg': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:5811:13: note: in expansion of macro 'CORE_LOGF_ERRNO_X' - 5811 | CORE_LOGF_ERRNO_X(154, eLOG_Error, errno, - | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:4834:17: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 4834 | CORE_LOGF_ERRNO_EXX(132, eLOG_Error, + | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -7703,8 +7811,11 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:5828:9: note: in expansion of macro 'CORE_LOGF_X' - 5828 | CORE_LOGF_X(88, eLOG_Error, +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:70:7: note: in expansion of macro 'CORE_LOGF_X' + 70 | CORE_LOGF_X(subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:580:9: note: in expansion of macro 'CONN_LOG_EX' + 580 | CONN_LOG_EX(11, GetTimeout, eLOG_Warning, | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -7718,9 +7829,13 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:5837:9: note: in expansion of macro 'CORE_LOGF_X' - 5837 | CORE_LOGF_X(89, eLOG_Error, +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:70:7: note: in expansion of macro 'CORE_LOGF_X' + 70 | CORE_LOGF_X(subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:595:9: note: in expansion of macro 'CONN_LOG_EX' + 595 | CONN_LOG_EX(12, GetTimeout, eLOG_Error, errbuf, 0); | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c: In function 'CONN_Wait': /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -7733,85 +7848,100 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:5887:17: note: in expansion of macro 'CORE_LOGF_X' - 5887 | CORE_LOGF_X(90, eLOG_Error, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:70:7: note: in expansion of macro 'CORE_LOGF_X' + 70 | CORE_LOGF_X(subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:104:11: note: in expansion of macro 'CONN_LOG_EX' + 104 | CONN_LOG_EX(subcode, func_name, eLOG_Error, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:117:34: note: in expansion of macro 'CONN_NOT_NULL_EX' + 117 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) + | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:611:5: note: in expansion of macro 'CONN_NOT_NULL' + 611 | CONN_NOT_NULL(13, Wait); | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:5933:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 5933 | CORE_LOGF_ERRNO_EXX(91, eLOG_Trace, - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c: In function 'TRIGGER_Create': /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:70:7: note: in expansion of macro 'CORE_LOGF_X' + 70 | CORE_LOGF_X(subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:111:11: note: in expansion of macro 'CONN_LOG_EX' + 111 | CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:117:34: note: in expansion of macro 'CONN_NOT_NULL_EX' + 117 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) + | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:611:5: note: in expansion of macro 'CONN_NOT_NULL' + 611 | CONN_NOT_NULL(13, Wait); | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:5978:13: note: in expansion of macro 'CORE_LOGF_ERRNO_X' - 5978 | CORE_LOGF_ERRNO_X(28, eLOG_Error, errno, - | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:5988:13: note: in expansion of macro 'CORE_LOGF_ERRNO_X' - 5988 | CORE_LOGF_ERRNO_X(143, eLOG_Warning, errno, - | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:159:5: note: in expansion of macro 'DO_CORE_LOG' + 159 | DO_CORE_LOG(0, 0, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:4856:17: note: in expansion of macro 'CORE_LOGF' + 4856 | CORE_LOGF(eLOG_Trace, + | ^~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:6000:13: note: in expansion of macro 'CORE_LOGF_ERRNO_X' - 6000 | CORE_LOGF_ERRNO_X(29, eLOG_Error, errno, - | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:70:7: note: in expansion of macro 'CORE_LOGF_X' + 70 | CORE_LOGF_X(subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:81:39: note: in expansion of macro 'CONN_LOG_EX' + 81 | #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:655:9: note: in expansion of macro 'CONN_LOG' + 655 | CONN_LOG(event != eIO_Read ? 15 : 14, Wait, level, + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c: In function 's_CONN_Write': /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:6010:13: note: in expansion of macro 'CORE_LOGF_ERRNO_X' - 6010 | CORE_LOGF_ERRNO_X(30, eLOG_Warning, errno, - | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:70:7: note: in expansion of macro 'CORE_LOGF_X' + 70 | CORE_LOGF_X(subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:81:39: note: in expansion of macro 'CONN_LOG_EX' + 81 | #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:676:9: note: in expansion of macro 'CONN_LOG' + 676 | CONN_LOG(16, Write, eLOG_Critical, "Cannot write data"); + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -7824,10 +7954,16 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:6029:13: note: in expansion of macro 'CORE_LOGF_X' - 6029 | CORE_LOGF_X(116, eLOG_Note, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c: In function 'TRIGGER_Close': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:70:7: note: in expansion of macro 'CORE_LOGF_X' + 70 | CORE_LOGF_X(subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:81:39: note: in expansion of macro 'CONN_LOG_EX' + 81 | #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:719:13: note: in expansion of macro 'CONN_LOG' + 719 | CONN_LOG(17, Write, level, "Unable to write data"); + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c: In function 'CONN_Write': /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -7840,10 +7976,18 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:6083:9: note: in expansion of macro 'CORE_LOGF_X' - 6083 | CORE_LOGF_X(117, eLOG_Note, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c: In function 'LSOCK_GetOSHandleEx': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:70:7: note: in expansion of macro 'CORE_LOGF_X' + 70 | CORE_LOGF_X(subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:104:11: note: in expansion of macro 'CONN_LOG_EX' + 104 | CONN_LOG_EX(subcode, func_name, eLOG_Error, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:117:34: note: in expansion of macro 'CONN_NOT_NULL_EX' + 117 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) + | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:758:5: note: in expansion of macro 'CONN_NOT_NULL' + 758 | CONN_NOT_NULL(18, Write); + | ^~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -7856,43 +8000,49 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:6307:9: note: in expansion of macro 'CORE_LOGF_X' - 6307 | CORE_LOGF_X(46, eLOG_Error, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c: In function 'SOCK_Reconnect': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:70:7: note: in expansion of macro 'CORE_LOGF_X' + 70 | CORE_LOGF_X(subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:111:11: note: in expansion of macro 'CONN_LOG_EX' + 111 | CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:117:34: note: in expansion of macro 'CONN_NOT_NULL_EX' + 117 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) + | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:758:5: note: in expansion of macro 'CONN_NOT_NULL' + 758 | CONN_NOT_NULL(18, Write); + | ^~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:6475:9: note: in expansion of macro 'CORE_LOGF_X' - 6475 | CORE_LOGF_X(52, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:4885:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 4885 | CORE_LOGF_ERRNO_EXX(153, eLOG_Warning, + | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:6485:9: note: in expansion of macro 'CORE_LOGF_X' - 6485 | CORE_LOGF_X(53, eLOG_Error, - | ^~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:62, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:34: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c: In function 'x_ReInit': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:4896:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 4896 | CORE_LOGF_ERRNO_EXX(138, eLOG_Warning, + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c: In function 'CONN_Pushback': /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -7908,12 +8058,15 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:70:7: note: in expansion of macro 'CORE_LOGF_X' 70 | CORE_LOGF_X(subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:81:39: note: in expansion of macro 'CONN_LOG_EX' - 81 | #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:282:13: note: in expansion of macro 'CONN_LOG' - 282 | CONN_LOG(4, ReInit, eLOG_Critical, "Partial re-init not allowed"); - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:104:11: note: in expansion of macro 'CONN_LOG_EX' + 104 | CONN_LOG_EX(subcode, func_name, eLOG_Error, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:117:34: note: in expansion of macro 'CONN_NOT_NULL_EX' + 117 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) + | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:792:5: note: in expansion of macro 'CONN_NOT_NULL' + 792 | CONN_NOT_NULL(19, Pushback); + | ^~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -7926,9 +8079,19 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:6497:13: note: in expansion of macro 'CORE_LOGF_X' - 6497 | CORE_LOGF_X(51, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:70:7: note: in expansion of macro 'CORE_LOGF_X' + 70 | CORE_LOGF_X(subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:111:11: note: in expansion of macro 'CONN_LOG_EX' + 111 | CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:117:34: note: in expansion of macro 'CONN_NOT_NULL_EX' + 117 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) + | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:792:5: note: in expansion of macro 'CONN_NOT_NULL' + 792 | CONN_NOT_NULL(19, Pushback); + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c: In function 'CONN_Flush': /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -7944,12 +8107,15 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:70:7: note: in expansion of macro 'CORE_LOGF_X' 70 | CORE_LOGF_X(subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:81:39: note: in expansion of macro 'CONN_LOG_EX' - 81 | #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:311:21: note: in expansion of macro 'CONN_LOG' - 311 | CONN_LOG(3, Close, - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:104:11: note: in expansion of macro 'CONN_LOG_EX' + 104 | CONN_LOG_EX(subcode, func_name, eLOG_Error, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:117:34: note: in expansion of macro 'CONN_NOT_NULL_EX' + 117 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) + | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:812:5: note: in expansion of macro 'CONN_NOT_NULL' + 812 | CONN_NOT_NULL(20, Flush); + | ^~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -7965,29 +8131,30 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:70:7: note: in expansion of macro 'CORE_LOGF_X' 70 | CORE_LOGF_X(subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:81:39: note: in expansion of macro 'CONN_LOG_EX' - 81 | #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:315:21: note: in expansion of macro 'CONN_LOG' - 315 | CONN_LOG(3, ReInit, eLOG_Error, - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c: In function 'SOCK_Shutdown': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c: In function 's_Open': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:111:11: note: in expansion of macro 'CONN_LOG_EX' + 111 | CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:117:34: note: in expansion of macro 'CONN_NOT_NULL_EX' + 117 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) + | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:812:5: note: in expansion of macro 'CONN_NOT_NULL' + 812 | CONN_NOT_NULL(20, Flush); + | ^~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:6535:9: note: in expansion of macro 'CORE_LOGF_X' - 6535 | CORE_LOGF_X(54, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:4919:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 4919 | CORE_LOGF_ERRNO_EXX(124, eLOG_Warning, + | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8006,10 +8173,10 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:81:39: note: in expansion of macro 'CONN_LOG_EX' 81 | #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:395:9: note: in expansion of macro 'CONN_LOG' - 395 | CONN_LOG(5, Open, eLOG_Error, "Failed to open connection"); +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:827:9: note: in expansion of macro 'CONN_LOG' + 827 | CONN_LOG(21, Flush, status == eIO_Timeout ? eLOG_Trace : eLOG_Warning, | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c: In function 'CONN_CreateEx': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c: In function 's_CONN_Read': /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8028,8 +8195,8 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:81:39: note: in expansion of macro 'CONN_LOG_EX' 81 | #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:437:9: note: in expansion of macro 'CONN_LOG' - 437 | CONN_LOG(2, Create, eLOG_Error, "NULL connector"); +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:851:9: note: in expansion of macro 'CONN_LOG' + 851 | CONN_LOG(22, Read, eLOG_Critical, "Cannot read data"); | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -8043,10 +8210,12 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:6542:9: note: in expansion of macro 'CORE_LOGF_X' - 6542 | CORE_LOGF_X(55, eLOG_Error, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c: In function 'CONN_ReInit': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:70:7: note: in expansion of macro 'CORE_LOGF_X' + 70 | CORE_LOGF_X(subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:893:17: note: in expansion of macro 'CONN_LOG_EX' + 893 | CONN_LOG_EX(32, Read, eLOG_Critical, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8062,15 +8231,28 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:70:7: note: in expansion of macro 'CORE_LOGF_X' 70 | CORE_LOGF_X(subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:104:11: note: in expansion of macro 'CONN_LOG_EX' - 104 | CONN_LOG_EX(subcode, func_name, eLOG_Error, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:117:34: note: in expansion of macro 'CONN_NOT_NULL_EX' - 117 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) - | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:459:5: note: in expansion of macro 'CONN_NOT_NULL' - 459 | CONN_NOT_NULL(1, ReInit); +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:81:39: note: in expansion of macro 'CONN_LOG_EX' + 81 | #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:919:13: note: in expansion of macro 'CONN_LOG' + 919 | CONN_LOG(23, Read, level, "Unable to read data"); + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:4937:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 4937 | CORE_LOGF_ERRNO_EXX(43, eLOG_Warning, + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c: In function 'CONN_Read': /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8083,9 +8265,19 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:6550:9: note: in expansion of macro 'CORE_LOGF_X' - 6550 | CORE_LOGF_X(15, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:70:7: note: in expansion of macro 'CORE_LOGF_X' + 70 | CORE_LOGF_X(subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:104:11: note: in expansion of macro 'CONN_LOG_EX' + 104 | CONN_LOG_EX(subcode, func_name, eLOG_Error, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:117:34: note: in expansion of macro 'CONN_NOT_NULL_EX' + 117 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) + | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:966:5: note: in expansion of macro 'CONN_NOT_NULL' + 966 | CONN_NOT_NULL(24, Read); + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c: In function 's_CreateListening': /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8107,10 +8299,10 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:117:34: note: in expansion of macro 'CONN_NOT_NULL_EX' 117 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:459:5: note: in expansion of macro 'CONN_NOT_NULL' - 459 | CONN_NOT_NULL(1, ReInit); +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:966:5: note: in expansion of macro 'CONN_NOT_NULL' + 966 | CONN_NOT_NULL(24, Read); | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c: In function 'CONN_GetType': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c: In function 'CONN_ReadLine': /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8129,9 +8321,24 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:104:11: note: in expansion of macro 'CONN_LOG_EX' 104 | CONN_LOG_EX(subcode, func_name, eLOG_Error, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:467:5: note: in expansion of macro 'CONN_NOT_NULL_EX' - 467 | CONN_NOT_NULL_EX(6, GetType, 0); - | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:117:34: note: in expansion of macro 'CONN_NOT_NULL_EX' + 117 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) + | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:1014:5: note: in expansion of macro 'CONN_NOT_NULL' + 1014 | CONN_NOT_NULL(25, ReadLine); + | ^~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:62, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connutil.c:36: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connutil.c: In function 'ConnNetInfo_Log': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:137:54: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 137 | LOG_Write(lg, code, subcode, level, THIS_MODULE, CORE_CURRENT_FUNCTION, \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connutil.c:1687:9: note: in expansion of macro 'LOG_WRITE' + 1687 | LOG_WRITE(lg, NCBI_C_ERRCODE_X, 11, + | ^~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8150,10 +8357,12 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:111:11: note: in expansion of macro 'CONN_LOG_EX' 111 | CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:467:5: note: in expansion of macro 'CONN_NOT_NULL_EX' - 467 | CONN_NOT_NULL_EX(6, GetType, 0); - | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c: In function 'CONN_Description': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:117:34: note: in expansion of macro 'CONN_NOT_NULL_EX' + 117 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) + | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:1014:5: note: in expansion of macro 'CONN_NOT_NULL' + 1014 | CONN_NOT_NULL(25, ReadLine); + | ^~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8166,15 +8375,9 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:70:7: note: in expansion of macro 'CORE_LOGF_X' - 70 | CORE_LOGF_X(subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:104:11: note: in expansion of macro 'CONN_LOG_EX' - 104 | CONN_LOG_EX(subcode, func_name, eLOG_Error, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:476:5: note: in expansion of macro 'CONN_NOT_NULL_EX' - 476 | CONN_NOT_NULL_EX(7, Description, 0); - | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:5011:13: note: in expansion of macro 'CORE_LOGF_X' + 5011 | CORE_LOGF_X(144, eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8190,13 +8393,10 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:70:7: note: in expansion of macro 'CORE_LOGF_X' 70 | CORE_LOGF_X(subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:111:11: note: in expansion of macro 'CONN_LOG_EX' - 111 | CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:476:5: note: in expansion of macro 'CONN_NOT_NULL_EX' - 476 | CONN_NOT_NULL_EX(7, Description, 0); - | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c: In function 'CONN_GetPosition': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:1061:17: note: in expansion of macro 'CONN_LOG_EX' + 1061 | CONN_LOG_EX(35, ReadLine, eLOG_Critical, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c: In function 'CONN_Status': /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8215,10 +8415,12 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:104:11: note: in expansion of macro 'CONN_LOG_EX' 104 | CONN_LOG_EX(subcode, func_name, eLOG_Error, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:488:5: note: in expansion of macro 'CONN_NOT_NULL_EX' - 488 | CONN_NOT_NULL_EX(30, GetPosition, 0); - | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c: In function 'SOCK_Wait': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:117:34: note: in expansion of macro 'CONN_NOT_NULL_EX' + 117 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) + | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:1080:5: note: in expansion of macro 'CONN_NOT_NULL' + 1080 | CONN_NOT_NULL(26, Status); + | ^~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8237,9 +8439,13 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:111:11: note: in expansion of macro 'CONN_LOG_EX' 111 | CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:488:5: note: in expansion of macro 'CONN_NOT_NULL_EX' - 488 | CONN_NOT_NULL_EX(30, GetPosition, 0); - | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:117:34: note: in expansion of macro 'CONN_NOT_NULL_EX' + 117 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) + | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:1080:5: note: in expansion of macro 'CONN_NOT_NULL' + 1080 | CONN_NOT_NULL(26, Status); + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connutil.c: In function 'URL_ConnectEx': /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8249,15 +8455,13 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:70:7: note: in expansion of macro 'CORE_LOGF_X' - 70 | CORE_LOGF_X(subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:501:9: note: in expansion of macro 'CONN_LOG_EX' - 501 | CONN_LOG_EX(31, GetPosition, eLOG_Error, errbuf, 0); - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | make[5]: warning: -j4 forced in submake: resetting jobserver mode. + ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connutil.c:1903:9: note: in expansion of macro 'CORE_LOG_X' + 1903 | CORE_LOG_X(2, eLOG_Critical, "[URL_Connect] Bad argument(s)"); + | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8270,10 +8474,25 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:6692:9: note: in expansion of macro 'CORE_LOGF_X' - 6692 | CORE_LOGF_X(56, eLOG_Error, +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connutil.c:1940:9: note: in expansion of macro 'CORE_LOGF_X' + 1940 | CORE_LOGF_X(3, eLOG_Warning, | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c: In function 'CONN_SetTimeout': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c: In function 'CONN_Close': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:5053:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 5053 | CORE_LOGF_ERRNO_EXX(34, eLOG_Error, + | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8295,9 +8514,24 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:117:34: note: in expansion of macro 'CONN_NOT_NULL_EX' 117 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:517:5: note: in expansion of macro 'CONN_NOT_NULL' - 517 | CONN_NOT_NULL(8, SetTimeout); +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:1126:5: note: in expansion of macro 'CONN_NOT_NULL' + 1126 | CONN_NOT_NULL(27, Close); + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connutil.c:1963:9: note: in expansion of macro 'CORE_LOGF_X' + 1963 | CORE_LOGF_X(4, eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8319,8 +8553,8 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:117:34: note: in expansion of macro 'CONN_NOT_NULL_EX' 117 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:517:5: note: in expansion of macro 'CONN_NOT_NULL' - 517 | CONN_NOT_NULL(8, SetTimeout); +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:1126:5: note: in expansion of macro 'CONN_NOT_NULL' + 1126 | CONN_NOT_NULL(27, Close); | ^~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -8328,19 +8562,16 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:70:7: note: in expansion of macro 'CORE_LOGF_X' - 70 | CORE_LOGF_X(subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:557:9: note: in expansion of macro 'CONN_LOG_EX' - 557 | CONN_LOG_EX(9, SetTimeout, eLOG_Error, errbuf, eIO_InvalidArg); - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c: In function 'CONN_GetTimeout': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connutil.c:2014:9: note: in expansion of macro 'CORE_LOGF_ERRNO_X' + 2014 | CORE_LOGF_ERRNO_X(5, eLOG_Error, x_errno, + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c: In function 'CONN_SetCallback': /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8359,24 +8590,27 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:104:11: note: in expansion of macro 'CONN_LOG_EX' 104 | CONN_LOG_EX(subcode, func_name, eLOG_Error, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:572:5: note: in expansion of macro 'CONN_NOT_NULL_EX' - 572 | CONN_NOT_NULL_EX(10, GetTimeout, 0); - | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:117:34: note: in expansion of macro 'CONN_NOT_NULL_EX' + 117 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) + | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:1146:5: note: in expansion of macro 'CONN_NOT_NULL' + 1146 | CONN_NOT_NULL(28, SetCallback); + | ^~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:6720:13: note: in expansion of macro 'CORE_LOGF_X' - 6720 | CORE_LOGF_X(57, eLOG_Warning, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connutil.c:2031:9: note: in expansion of macro 'CORE_LOGF_ERRNO_X' + 2031 | CORE_LOGF_ERRNO_X(6, eLOG_Error, x_errno, + | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8395,27 +8629,27 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:111:11: note: in expansion of macro 'CONN_LOG_EX' 111 | CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:572:5: note: in expansion of macro 'CONN_NOT_NULL_EX' - 572 | CONN_NOT_NULL_EX(10, GetTimeout, 0); - | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:117:34: note: in expansion of macro 'CONN_NOT_NULL_EX' + 117 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) + | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:1146:5: note: in expansion of macro 'CONN_NOT_NULL' + 1146 | CONN_NOT_NULL(28, SetCallback); + | ^~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:70:7: note: in expansion of macro 'CORE_LOGF_X' - 70 | CORE_LOGF_X(subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:580:9: note: in expansion of macro 'CONN_LOG_EX' - 580 | CONN_LOG_EX(11, GetTimeout, eLOG_Warning, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:5099:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 5099 | CORE_LOGF_ERRNO_EXX(35, eLOG_Error, + | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8431,8 +8665,8 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:70:7: note: in expansion of macro 'CORE_LOGF_X' 70 | CORE_LOGF_X(subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:595:9: note: in expansion of macro 'CONN_LOG_EX' - 595 | CONN_LOG_EX(12, GetTimeout, eLOG_Error, errbuf, 0); +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:1152:9: note: in expansion of macro 'CONN_LOG_EX' + 1152 | CONN_LOG_EX(29, SetCallback, eLOG_Error, errbuf, eIO_InvalidArg); | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -8446,10 +8680,11 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:6734:13: note: in expansion of macro 'CORE_LOGF_X' - 6734 | CORE_LOGF_X(58, eLOG_Warning, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c: In function 'CONN_Wait': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connutil.c:2078:9: note: in expansion of macro 'CORE_LOGF_X' + 2078 | CORE_LOGF_X(7, eLOG_Error, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connutil.c: In function 'URL_Connect': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c: In function 'CONN_GetSOCK': /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8471,9 +8706,24 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:117:34: note: in expansion of macro 'CONN_NOT_NULL_EX' 117 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:611:5: note: in expansion of macro 'CONN_NOT_NULL' - 611 | CONN_NOT_NULL(13, Wait); +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:1173:5: note: in expansion of macro 'CONN_NOT_NULL' + 1173 | CONN_NOT_NULL(36, GetSOCK); + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connutil.c:2111:9: note: in expansion of macro 'CORE_LOG_X' + 2111 | CORE_LOG_X(9, eLOG_Error, + | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8495,8 +8745,8 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:117:34: note: in expansion of macro 'CONN_NOT_NULL_EX' 117 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:611:5: note: in expansion of macro 'CONN_NOT_NULL' - 611 | CONN_NOT_NULL(13, Wait); +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:1173:5: note: in expansion of macro 'CONN_NOT_NULL' + 1173 | CONN_NOT_NULL(36, GetSOCK); | ^~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -8504,73 +8754,60 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:6748:17: note: in expansion of macro 'CORE_LOGF_X' - 6748 | CORE_LOGF_X(59, eLOG_Warning, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connutil.c:2153:17: note: in expansion of macro 'CORE_LOGF_ERRNO_X' + 2153 | CORE_LOGF_ERRNO_X(8, eLOG_Error, errno, + | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:70:7: note: in expansion of macro 'CORE_LOGF_X' - 70 | CORE_LOGF_X(subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:81:39: note: in expansion of macro 'CONN_LOG_EX' - 81 | #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:655:9: note: in expansion of macro 'CONN_LOG' - 655 | CONN_LOG(event != eIO_Read ? 15 : 14, Wait, level, - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c: In function 's_CONN_Write': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:5154:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 5154 | CORE_LOGF_ERRNO_EXX(36, error != SOCK_EADDRINUSE + | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:70:7: note: in expansion of macro 'CORE_LOGF_X' - 70 | CORE_LOGF_X(subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:81:39: note: in expansion of macro 'CONN_LOG_EX' - 81 | #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:676:9: note: in expansion of macro 'CONN_LOG' - 676 | CONN_LOG(16, Write, eLOG_Critical, "Cannot write data"); - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:5175:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 5175 | CORE_LOGF_ERRNO_EXX(150, eLOG_Error, + | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:6757:17: note: in expansion of macro 'CORE_LOGF_X' - 6757 | CORE_LOGF_X(60, eLOG_Warning, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:5245:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 5245 | CORE_LOGF_ERRNO_EXX(37, eLOG_Error, + | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8583,15 +8820,10 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:70:7: note: in expansion of macro 'CORE_LOGF_X' - 70 | CORE_LOGF_X(subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:81:39: note: in expansion of macro 'CONN_LOG_EX' - 81 | #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:719:13: note: in expansion of macro 'CONN_LOG' - 719 | CONN_LOG(17, Write, level, "Unable to write data"); - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:5312:9: note: in expansion of macro 'CORE_LOGF_X' + 5312 | CORE_LOGF_X(115, eLOG_Note, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c: In function 's_Accept': /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8604,98 +8836,100 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:6767:13: note: in expansion of macro 'CORE_LOGF_X' - 6767 | CORE_LOGF_X(61, eLOG_Warning, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c: In function 'CONN_Write': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:5349:9: note: in expansion of macro 'CORE_LOGF_X' + 5349 | CORE_LOGF_X(39, eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:70:7: note: in expansion of macro 'CORE_LOGF_X' - 70 | CORE_LOGF_X(subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:104:11: note: in expansion of macro 'CONN_LOG_EX' - 104 | CONN_LOG_EX(subcode, func_name, eLOG_Error, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:117:34: note: in expansion of macro 'CONN_NOT_NULL_EX' - 117 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) - | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:758:5: note: in expansion of macro 'CONN_NOT_NULL' - 758 | CONN_NOT_NULL(18, Write); +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:5405:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 5405 | CORE_LOGF_ERRNO_EXX(40, eLOG_Error, + | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:70:7: note: in expansion of macro 'CORE_LOGF_X' - 70 | CORE_LOGF_X(subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:111:11: note: in expansion of macro 'CONN_LOG_EX' - 111 | CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:117:34: note: in expansion of macro 'CONN_NOT_NULL_EX' - 117 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) - | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:758:5: note: in expansion of macro 'CONN_NOT_NULL' - 758 | CONN_NOT_NULL(18, Write); +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:5464:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 5464 | CORE_LOGF_ERRNO_EXX(41, eLOG_Error, + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:5521:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 5521 | CORE_LOGF_ERRNO_EXX(42, eLOG_Warning, + | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:6777:9: note: in expansion of macro 'CORE_LOGF_X' - 6777 | CORE_LOGF_X(62, eLOG_Error, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c: In function 'CONN_Pushback': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:5532:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 5532 | CORE_LOGF_ERRNO_EXX(152, eLOG_Warning, + | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:70:7: note: in expansion of macro 'CORE_LOGF_X' - 70 | CORE_LOGF_X(subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:104:11: note: in expansion of macro 'CONN_LOG_EX' - 104 | CONN_LOG_EX(subcode, func_name, eLOG_Error, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:117:34: note: in expansion of macro 'CONN_NOT_NULL_EX' - 117 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) - | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:792:5: note: in expansion of macro 'CONN_NOT_NULL' - 792 | CONN_NOT_NULL(19, Pushback); +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:5543:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 5543 | CORE_LOGF_ERRNO_EXX(137, eLOG_Warning, + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:5563:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 5563 | CORE_LOGF_ERRNO_EXX(128, eLOG_Warning, + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c: In function 's_CloseListening': /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8708,19 +8942,25 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:70:7: note: in expansion of macro 'CORE_LOGF_X' - 70 | CORE_LOGF_X(subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:111:11: note: in expansion of macro 'CONN_LOG_EX' - 111 | CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:117:34: note: in expansion of macro 'CONN_NOT_NULL_EX' - 117 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) - | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:792:5: note: in expansion of macro 'CONN_NOT_NULL' - 792 | CONN_NOT_NULL(19, Pushback); +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:5615:9: note: in expansion of macro 'CORE_LOGF_X' + 5615 | CORE_LOGF_X(44, eLOG_Note, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c: In function 'CONN_Flush': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:5641:17: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 5641 | CORE_LOGF_ERRNO_EXX(45, eLOG_Error, + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c: In function 's_RecvMsg': /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8733,19 +8973,40 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:70:7: note: in expansion of macro 'CORE_LOGF_X' - 70 | CORE_LOGF_X(subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:104:11: note: in expansion of macro 'CONN_LOG_EX' - 104 | CONN_LOG_EX(subcode, func_name, eLOG_Error, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:117:34: note: in expansion of macro 'CONN_NOT_NULL_EX' - 117 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) - | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:812:5: note: in expansion of macro 'CONN_NOT_NULL' - 812 | CONN_NOT_NULL(20, Flush); +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:5727:17: note: in expansion of macro 'CORE_LOGF_X' + 5727 | CORE_LOGF_X(20, eLOG_Error, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c: In function 'SOCK_SetTimeout': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:5776:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 5776 | CORE_LOGF_ERRNO_EXX(94, eLOG_Trace, + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c: In function 's_SendMsg': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:5811:13: note: in expansion of macro 'CORE_LOGF_ERRNO_X' + 5811 | CORE_LOGF_ERRNO_X(154, eLOG_Error, errno, + | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8758,18 +9019,9 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:70:7: note: in expansion of macro 'CORE_LOGF_X' - 70 | CORE_LOGF_X(subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:111:11: note: in expansion of macro 'CONN_LOG_EX' - 111 | CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:117:34: note: in expansion of macro 'CONN_NOT_NULL_EX' - 117 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) - | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:812:5: note: in expansion of macro 'CONN_NOT_NULL' - 812 | CONN_NOT_NULL(20, Flush); - | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:5828:9: note: in expansion of macro 'CORE_LOGF_X' + 5828 | CORE_LOGF_X(88, eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8782,8 +9034,8 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:6907:9: note: in expansion of macro 'CORE_LOGF_X' - 6907 | CORE_LOGF_X(63, eLOG_Error, +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:5837:9: note: in expansion of macro 'CORE_LOGF_X' + 5837 | CORE_LOGF_X(89, eLOG_Error, | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -8797,16 +9049,85 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:70:7: note: in expansion of macro 'CORE_LOGF_X' - 70 | CORE_LOGF_X(subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:81:39: note: in expansion of macro 'CONN_LOG_EX' - 81 | #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:827:9: note: in expansion of macro 'CONN_LOG' - 827 | CONN_LOG(21, Flush, status == eIO_Timeout ? eLOG_Trace : eLOG_Warning, - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c: In function 'SOCK_GetTimeout': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:5887:17: note: in expansion of macro 'CORE_LOGF_X' + 5887 | CORE_LOGF_X(90, eLOG_Error, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:5933:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 5933 | CORE_LOGF_ERRNO_EXX(91, eLOG_Trace, + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c: In function 'TRIGGER_Create': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:5978:13: note: in expansion of macro 'CORE_LOGF_ERRNO_X' + 5978 | CORE_LOGF_ERRNO_X(28, eLOG_Error, errno, + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:5988:13: note: in expansion of macro 'CORE_LOGF_ERRNO_X' + 5988 | CORE_LOGF_ERRNO_X(143, eLOG_Warning, errno, + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:6000:13: note: in expansion of macro 'CORE_LOGF_ERRNO_X' + 6000 | CORE_LOGF_ERRNO_X(29, eLOG_Error, errno, + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:6010:13: note: in expansion of macro 'CORE_LOGF_ERRNO_X' + 6010 | CORE_LOGF_ERRNO_X(30, eLOG_Warning, errno, + | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8819,10 +9140,10 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:6948:9: note: in expansion of macro 'CORE_LOGF_X' - 6948 | CORE_LOGF_X(64, eLOG_Error, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c: In function 's_CONN_Read': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:6029:13: note: in expansion of macro 'CORE_LOGF_X' + 6029 | CORE_LOGF_X(116, eLOG_Note, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c: In function 'TRIGGER_Close': /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8835,16 +9156,10 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:70:7: note: in expansion of macro 'CORE_LOGF_X' - 70 | CORE_LOGF_X(subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:81:39: note: in expansion of macro 'CONN_LOG_EX' - 81 | #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:851:9: note: in expansion of macro 'CONN_LOG' - 851 | CONN_LOG(22, Read, eLOG_Critical, "Cannot read data"); - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c: In function 'SOCK_Read': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:6083:9: note: in expansion of macro 'CORE_LOGF_X' + 6083 | CORE_LOGF_X(117, eLOG_Note, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c: In function 'LSOCK_GetOSHandleEx': /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8857,12 +9172,10 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:70:7: note: in expansion of macro 'CORE_LOGF_X' - 70 | CORE_LOGF_X(subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:893:17: note: in expansion of macro 'CONN_LOG_EX' - 893 | CONN_LOG_EX(32, Read, eLOG_Critical, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:6307:9: note: in expansion of macro 'CORE_LOGF_X' + 6307 | CORE_LOGF_X(46, eLOG_Error, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c: In function 'SOCK_Reconnect': /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8875,9 +9188,9 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:6990:13: note: in expansion of macro 'CORE_LOGF_X' - 6990 | CORE_LOGF_X(65, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:6475:9: note: in expansion of macro 'CORE_LOGF_X' + 6475 | CORE_LOGF_X(52, eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8890,16 +9203,9 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:70:7: note: in expansion of macro 'CORE_LOGF_X' - 70 | CORE_LOGF_X(subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:81:39: note: in expansion of macro 'CONN_LOG_EX' - 81 | #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:919:13: note: in expansion of macro 'CONN_LOG' - 919 | CONN_LOG(23, Read, level, "Unable to read data"); - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c: In function 'CONN_Read': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:6485:9: note: in expansion of macro 'CORE_LOGF_X' + 6485 | CORE_LOGF_X(53, eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8912,9 +9218,10 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:7000:9: note: in expansion of macro 'CORE_LOGF_X' - 7000 | CORE_LOGF_X(66, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:6497:13: note: in expansion of macro 'CORE_LOGF_X' + 6497 | CORE_LOGF_X(51, eLOG_Error, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c: In function 'SOCK_Shutdown': /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8927,19 +9234,9 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:70:7: note: in expansion of macro 'CORE_LOGF_X' - 70 | CORE_LOGF_X(subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:104:11: note: in expansion of macro 'CONN_LOG_EX' - 104 | CONN_LOG_EX(subcode, func_name, eLOG_Error, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:117:34: note: in expansion of macro 'CONN_NOT_NULL_EX' - 117 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) - | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:966:5: note: in expansion of macro 'CONN_NOT_NULL' - 966 | CONN_NOT_NULL(24, Read); - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c: In function 'SOCK_ReadLine': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:6535:9: note: in expansion of macro 'CORE_LOGF_X' + 6535 | CORE_LOGF_X(54, eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8952,18 +9249,9 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:70:7: note: in expansion of macro 'CORE_LOGF_X' - 70 | CORE_LOGF_X(subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:111:11: note: in expansion of macro 'CONN_LOG_EX' - 111 | CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:117:34: note: in expansion of macro 'CONN_NOT_NULL_EX' - 117 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) - | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:966:5: note: in expansion of macro 'CONN_NOT_NULL' - 966 | CONN_NOT_NULL(24, Read); - | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:6542:9: note: in expansion of macro 'CORE_LOGF_X' + 6542 | CORE_LOGF_X(55, eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8976,10 +9264,10 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:7031:9: note: in expansion of macro 'CORE_LOGF_X' - 7031 | CORE_LOGF_X(125, eLOG_Error, +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:6550:9: note: in expansion of macro 'CORE_LOGF_X' + 6550 | CORE_LOGF_X(15, eLOG_Error, | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c: In function 'CONN_ReadLine': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c: In function 'SOCK_Wait': /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8992,18 +9280,9 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:70:7: note: in expansion of macro 'CORE_LOGF_X' - 70 | CORE_LOGF_X(subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:104:11: note: in expansion of macro 'CONN_LOG_EX' - 104 | CONN_LOG_EX(subcode, func_name, eLOG_Error, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:117:34: note: in expansion of macro 'CONN_NOT_NULL_EX' - 117 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) - | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:1014:5: note: in expansion of macro 'CONN_NOT_NULL' - 1014 | CONN_NOT_NULL(25, ReadLine); - | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:6692:9: note: in expansion of macro 'CORE_LOGF_X' + 6692 | CORE_LOGF_X(56, eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -9016,18 +9295,9 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:70:7: note: in expansion of macro 'CORE_LOGF_X' - 70 | CORE_LOGF_X(subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:111:11: note: in expansion of macro 'CONN_LOG_EX' - 111 | CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:117:34: note: in expansion of macro 'CONN_NOT_NULL_EX' - 117 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) - | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:1014:5: note: in expansion of macro 'CONN_NOT_NULL' - 1014 | CONN_NOT_NULL(25, ReadLine); - | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:6720:13: note: in expansion of macro 'CORE_LOGF_X' + 6720 | CORE_LOGF_X(57, eLOG_Warning, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -9040,13 +9310,9 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:70:7: note: in expansion of macro 'CORE_LOGF_X' - 70 | CORE_LOGF_X(subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:1061:17: note: in expansion of macro 'CONN_LOG_EX' - 1061 | CONN_LOG_EX(35, ReadLine, eLOG_Critical, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c: In function 'CONN_Status': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:6734:13: note: in expansion of macro 'CORE_LOGF_X' + 6734 | CORE_LOGF_X(58, eLOG_Warning, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -9059,19 +9325,9 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:70:7: note: in expansion of macro 'CORE_LOGF_X' - 70 | CORE_LOGF_X(subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:104:11: note: in expansion of macro 'CONN_LOG_EX' - 104 | CONN_LOG_EX(subcode, func_name, eLOG_Error, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:117:34: note: in expansion of macro 'CONN_NOT_NULL_EX' - 117 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) - | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:1080:5: note: in expansion of macro 'CONN_NOT_NULL' - 1080 | CONN_NOT_NULL(26, Status); - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c: In function 'SOCK_Pushback': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:6748:17: note: in expansion of macro 'CORE_LOGF_X' + 6748 | CORE_LOGF_X(59, eLOG_Warning, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -9084,18 +9340,9 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:70:7: note: in expansion of macro 'CORE_LOGF_X' - 70 | CORE_LOGF_X(subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:111:11: note: in expansion of macro 'CONN_LOG_EX' - 111 | CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:117:34: note: in expansion of macro 'CONN_NOT_NULL_EX' - 117 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) - | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:1080:5: note: in expansion of macro 'CONN_NOT_NULL' - 1080 | CONN_NOT_NULL(26, Status); - | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:6757:17: note: in expansion of macro 'CORE_LOGF_X' + 6757 | CORE_LOGF_X(60, eLOG_Warning, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -9108,10 +9355,9 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:7107:9: note: in expansion of macro 'CORE_LOGF_X' - 7107 | CORE_LOGF_X(67, eLOG_Error, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c: In function 'CONN_Close': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:6767:13: note: in expansion of macro 'CORE_LOGF_X' + 6767 | CORE_LOGF_X(61, eLOG_Warning, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -9124,19 +9370,10 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:70:7: note: in expansion of macro 'CORE_LOGF_X' - 70 | CORE_LOGF_X(subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:104:11: note: in expansion of macro 'CONN_LOG_EX' - 104 | CONN_LOG_EX(subcode, func_name, eLOG_Error, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:117:34: note: in expansion of macro 'CONN_NOT_NULL_EX' - 117 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) - | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:1126:5: note: in expansion of macro 'CONN_NOT_NULL' - 1126 | CONN_NOT_NULL(27, Close); - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c: In function 'SOCK_Write': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:6777:9: note: in expansion of macro 'CORE_LOGF_X' + 6777 | CORE_LOGF_X(62, eLOG_Error, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c: In function 'SOCK_SetTimeout': /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -9149,19 +9386,10 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:70:7: note: in expansion of macro 'CORE_LOGF_X' - 70 | CORE_LOGF_X(subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:111:11: note: in expansion of macro 'CONN_LOG_EX' - 111 | CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:117:34: note: in expansion of macro 'CONN_NOT_NULL_EX' - 117 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) - | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:1126:5: note: in expansion of macro 'CONN_NOT_NULL' - 1126 | CONN_NOT_NULL(27, Close); - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c: In function 'CONN_SetCallback': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:6907:9: note: in expansion of macro 'CORE_LOGF_X' + 6907 | CORE_LOGF_X(63, eLOG_Error, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c: In function 'SOCK_GetTimeout': /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -9174,9 +9402,10 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:7159:17: note: in expansion of macro 'CORE_LOGF_X' - 7159 | CORE_LOGF_X(68, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:6948:9: note: in expansion of macro 'CORE_LOGF_X' + 6948 | CORE_LOGF_X(64, eLOG_Error, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c: In function 'SOCK_Read': /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -9189,18 +9418,9 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:70:7: note: in expansion of macro 'CORE_LOGF_X' - 70 | CORE_LOGF_X(subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:104:11: note: in expansion of macro 'CONN_LOG_EX' - 104 | CONN_LOG_EX(subcode, func_name, eLOG_Error, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:117:34: note: in expansion of macro 'CONN_NOT_NULL_EX' - 117 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) - | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:1146:5: note: in expansion of macro 'CONN_NOT_NULL' - 1146 | CONN_NOT_NULL(28, SetCallback); - | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:6990:13: note: in expansion of macro 'CORE_LOGF_X' + 6990 | CORE_LOGF_X(65, eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -9213,18 +9433,10 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:70:7: note: in expansion of macro 'CORE_LOGF_X' - 70 | CORE_LOGF_X(subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:111:11: note: in expansion of macro 'CONN_LOG_EX' - 111 | CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:117:34: note: in expansion of macro 'CONN_NOT_NULL_EX' - 117 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) - | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:1146:5: note: in expansion of macro 'CONN_NOT_NULL' - 1146 | CONN_NOT_NULL(28, SetCallback); - | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:7000:9: note: in expansion of macro 'CORE_LOGF_X' + 7000 | CORE_LOGF_X(66, eLOG_Error, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c: In function 'SOCK_ReadLine': /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -9237,9 +9449,10 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:7186:13: note: in expansion of macro 'CORE_LOGF_X' - 7186 | CORE_LOGF_X(69, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:7031:9: note: in expansion of macro 'CORE_LOGF_X' + 7031 | CORE_LOGF_X(125, eLOG_Error, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c: In function 'SOCK_Pushback': /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -9252,13 +9465,10 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:70:7: note: in expansion of macro 'CORE_LOGF_X' - 70 | CORE_LOGF_X(subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:1152:9: note: in expansion of macro 'CONN_LOG_EX' - 1152 | CONN_LOG_EX(29, SetCallback, eLOG_Error, errbuf, eIO_InvalidArg); +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:7107:9: note: in expansion of macro 'CORE_LOGF_X' + 7107 | CORE_LOGF_X(67, eLOG_Error, | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c: In function 'CONN_GetSOCK': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c: In function 'SOCK_Write': /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -9271,9 +9481,9 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:7196:9: note: in expansion of macro 'CORE_LOGF_X' - 7196 | CORE_LOGF_X(70, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:7159:17: note: in expansion of macro 'CORE_LOGF_X' + 7159 | CORE_LOGF_X(68, eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -9286,19 +9496,9 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:70:7: note: in expansion of macro 'CORE_LOGF_X' - 70 | CORE_LOGF_X(subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:104:11: note: in expansion of macro 'CONN_LOG_EX' - 104 | CONN_LOG_EX(subcode, func_name, eLOG_Error, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:117:34: note: in expansion of macro 'CONN_NOT_NULL_EX' - 117 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) - | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:1173:5: note: in expansion of macro 'CONN_NOT_NULL' - 1173 | CONN_NOT_NULL(36, GetSOCK); - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c: In function 'SOCK_Abort': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:7186:13: note: in expansion of macro 'CORE_LOGF_X' + 7186 | CORE_LOGF_X(69, eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -9311,18 +9511,10 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:70:7: note: in expansion of macro 'CORE_LOGF_X' - 70 | CORE_LOGF_X(subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:111:11: note: in expansion of macro 'CONN_LOG_EX' - 111 | CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:117:34: note: in expansion of macro 'CONN_NOT_NULL_EX' - 117 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) - | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connection.c:1173:5: note: in expansion of macro 'CONN_NOT_NULL' - 1173 | CONN_NOT_NULL(36, GetSOCK); - | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:7196:9: note: in expansion of macro 'CORE_LOGF_X' + 7196 | CORE_LOGF_X(70, eLOG_Error, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c: In function 'SOCK_Abort': /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -9493,6 +9685,16 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:7664:9: note: in expansion of macro 'CORE_LOGF_X' 7664 | CORE_LOGF_X(79, eLOG_Error, | ^~~~~~~~~~~ +/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/composition_adjustment/optimize_target_freq.c -o optimize_target_freq.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/composition_adjustment/redo_alignment.c -o redo_alignment.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/composition_adjustment/smith_waterman.c -o smith_waterman.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/composition_adjustment/unified_pvalues.c -o unified_pvalues.o +/bin/rm -f libcomposition_adjustment.so .libcomposition_adjustment.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libcomposition_adjustment.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC compo_heap.o compo_mode_condition.o composition_adjustment.o matrix_frequency_data.o nlm_linear_algebra.o optimize_target_freq.o redo_alignment.o smith_waterman.o unified_pvalues.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -ldl -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcomposition_adjustment.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib +/bin/ln -f libcomposition_adjustment.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libcomposition_adjustment.so +/bin/ln -f .composition_adjustment.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.composition_adjustment.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/composition_adjustment' /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -9584,6 +9786,8 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:7760:9: note: in expansion of macro 'CORE_LOGF_X' 7760 | CORE_LOGF_X(83, eLOG_Error, | ^~~~~~~~~~~ +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/composition_adjustment' +cd objtools/logging/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=logging UNIX_PROJ="" sources= configurables=configurables.null /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -9614,7 +9818,9 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:7802:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' 7802 | CORE_LOGF_ERRNO_EXX(85, eLOG_Error, | ^~~~~~~~~~~~~~~~~~~ +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/logging' /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c: In function 'DSOCK_WaitMsg': +make[4]: warning: -j4 forced in submake: resetting jobserver mode. /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -9815,6 +10021,12 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:8207:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' 8207 | CORE_LOGF_ERRNO_EXX(74, eLOG_Warning, | ^~~~~~~~~~~~~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/logging' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/logging' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/logging' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/logging' /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c: In function 'SOCK_SetupSSLInternal': /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -9831,174 +10043,8 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c:8596:13: note: in expansion of macro 'CORE_LOGF' 8596 | CORE_LOGF(eLOG_Critical, ("%s reset SSL while it is in use",verb)); | ^~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connutil.c:35: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connssl.h:47:25: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] - 47 | eNcbiCred_MbedTls = 0xC12CC16C - | ^~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_servicep.h:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connutil.c:37: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] - 91 | fSERV_IncludePrivate = 0x80000000, - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] - 92 | fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */ - | ^~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:62, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connutil.c:36: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connutil.c: In function 'ConnNetInfo_Log': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:137:54: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 137 | LOG_Write(lg, code, subcode, level, THIS_MODULE, CORE_CURRENT_FUNCTION, \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connutil.c:1687:9: note: in expansion of macro 'LOG_WRITE' - 1687 | LOG_WRITE(lg, NCBI_C_ERRCODE_X, 11, - | ^~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connutil.c: In function 'URL_ConnectEx': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connutil.c:1903:9: note: in expansion of macro 'CORE_LOG_X' - 1903 | CORE_LOG_X(2, eLOG_Critical, "[URL_Connect] Bad argument(s)"); - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connutil.c:1940:9: note: in expansion of macro 'CORE_LOGF_X' - 1940 | CORE_LOGF_X(3, eLOG_Warning, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connutil.c:1963:9: note: in expansion of macro 'CORE_LOGF_X' - 1963 | CORE_LOGF_X(4, eLOG_Error, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connutil.c:2014:9: note: in expansion of macro 'CORE_LOGF_ERRNO_X' - 2014 | CORE_LOGF_ERRNO_X(5, eLOG_Error, x_errno, - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connutil.c:2031:9: note: in expansion of macro 'CORE_LOGF_ERRNO_X' - 2031 | CORE_LOGF_ERRNO_X(6, eLOG_Error, x_errno, - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connutil.c:2078:9: note: in expansion of macro 'CORE_LOGF_X' - 2078 | CORE_LOGF_X(7, eLOG_Error, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connutil.c: In function 'URL_Connect': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connutil.c:2111:9: note: in expansion of macro 'CORE_LOG_X' - 2111 | CORE_LOG_X(9, eLOG_Error, - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connutil.c:2153:17: note: in expansion of macro 'CORE_LOGF_ERRNO_X' - 2153 | CORE_LOGF_ERRNO_X(8, eLOG_Error, errno, - | ^~~~~~~~~~~~~~~~~ -/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/composition_adjustment/optimize_target_freq.c -o optimize_target_freq.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/composition_adjustment/redo_alignment.c -o redo_alignment.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/composition_adjustment/smith_waterman.c -o smith_waterman.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/composition_adjustment/unified_pvalues.c -o unified_pvalues.o -/bin/rm -f libcomposition_adjustment.so .libcomposition_adjustment.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libcomposition_adjustment.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC compo_heap.o compo_mode_condition.o composition_adjustment.o matrix_frequency_data.o nlm_linear_algebra.o optimize_target_freq.o redo_alignment.o smith_waterman.o unified_pvalues.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -ldl -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcomposition_adjustment.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -/bin/ln -f libcomposition_adjustment.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libcomposition_adjustment.so -/bin/ln -f .composition_adjustment.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.composition_adjustment.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/composition_adjustment' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/composition_adjustment' -cd util/sequtil/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=sequtil UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/sequtil' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/sequtil' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/sequtil' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/sequtil' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/sequtil' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/util/sequtil TMPL=sequtil -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/logging TMPL=logging -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. =/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_buffer.c -o ncbi_buffer.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket.c -o ncbi_socket.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connector.c -o ncbi_connector.o @@ -10806,7 +10852,13 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_heapmgr.c:700:13: note: in expansion of macro 'CORE_LOGF_X' 700 | CORE_LOGF_X(9, eLOG_Warning, | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_heapmgr.c: In function 'HEAP_Free': +EFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_server_info.c -o ncbi_server_info.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_host_info.c -o ncbi_host_info.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_service.c -o ncbi_service.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_sendmail.c -o ncbi_sendmail.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_base64.c -o ncbi_base64.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_heapmgr.c -o ncbi_heapmgr.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD//build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_heapmgr.c: In function 'HEAP_Free': /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -11173,13 +11225,7 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_heapmgr.c:1323:9: note: in expansion of macro 'CORE_LOGF_X' 1323 | CORE_LOGF_X(33, eLOG_Error, | ^~~~~~~~~~~ -EFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_server_info.c -o ncbi_server_info.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_host_info.c -o ncbi_host_info.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_service.c -o ncbi_service.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_sendmail.c -o ncbi_sendmail.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_base64.c -o ncbi_base64.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_heapmgr.c -o ncbi_heapmgr.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_servicep.h:38, +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_servicep.h:38, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_lb.h:35, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_lb.c:32: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] @@ -11636,6 +11682,40 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_http_connector.c:2474:9: note: in expansion of macro 'CORE_LOGF_X' 2474 | CORE_LOGF_X(24, eLOG_Error, | ^~~~~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/logging' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/logging/message.cpp -o message.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/logging/listener.cpp -o listener.o +/bin/rm -f libxlogging.so .libxlogging.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libxlogging.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC message.o listener.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -ldl -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxlogging.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib +/bin/ln -f libxlogging.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libxlogging.so +/bin/ln -f .xlogging.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.xlogging.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/logging' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/logging' +cd objtools/blast/gene_info_reader/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=gene_info UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/gene_info_reader TMPL=gene_info -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_http_connector.c: In function 'x_Authenticate': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_http_connector.c:223:18: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] + 223 | s[userlen++] = ':'; + | ~~~~~~~~~~~~~^~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_http_connector.c:177:10: note: at offset -1 to object 'buf' with size 336 declared here + 177 | char buf[80+sizeof(uuu->net_info->user)*4], *s; + | ^~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_http_connector.c:223:18: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] + 223 | s[userlen++] = ':'; + | ~~~~~~~~~~~~~^~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_http_connector.c:177:10: note: at offset -1 to object 'buf' with size 336 declared here + 177 | char buf[80+sizeof(uuu->net_info->user)*4], *s; + | ^~~ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_servicep.h:38, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_service_connector.c:36: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] @@ -11967,19 +12047,6 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_ftp_connector.c:2321:9: note: in expansion of macro 'CORE_LOG' 2321 | CORE_LOG(eLOG_Critical, "fFTP_UseProxy not yet implemented"); | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_http_connector.c: In function 'x_Authenticate': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_http_connector.c:223:18: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] - 223 | s[userlen++] = ':'; - | ~~~~~~~~~~~~~^~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_http_connector.c:177:10: note: at offset -1 to object 'buf' with size 336 declared here - 177 | char buf[80+sizeof(uuu->net_info->user)*4], *s; - | ^~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_http_connector.c:223:18: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] - 223 | s[userlen++] = ':'; - | ~~~~~~~~~~~~~^~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_http_connector.c:177:10: note: at offset -1 to object 'buf' with size 336 declared here - 177 | char buf[80+sizeof(uuu->net_info->user)*4], *s; - | ^~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/sequtil' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/util/sequtil/sequtil.cpp -o sequtil.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/util/sequtil/sequtil_convert.cpp -o sequtil_convert.o @@ -11988,24 +12055,7 @@ /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/util/sequtil/sequtil_tables.cpp -o sequtil_tables.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/util/sequtil/sequtil_shared.cpp -o sequtil_shared.o /bin/rm -f libsequtil.so .libsequtil.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libsequtil.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC sequtil.o sequtil_convert.o sequtil_convert_imp.o sequtil_manip.o sequtil_tables.o sequtil_shared.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lxncbi -ldl -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsequtil.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -/bin/ln -f libsequtil.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libsequtil.so -/bin/ln -f .sequtil.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.sequtil.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/sequtil' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/sequtil' -cd objtools/logging/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=logging UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/logging' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/logging' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/logging' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/logging' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/logging' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/logging TMPL=logging -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_servicep.h:38, +/usr/bin/g++ -std=gnu++14 -shared -o libsequtil.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkgIn file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_servicep.h:38, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_lb.h:35, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_local.c:36: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] @@ -12014,18 +12064,21 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] 92 | fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */ | ^~~~~~~~~~ -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd objtools/blast/gene_info_reader/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=gene_info UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/gene_info_reader TMPL=gene_info -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC sequtil.o sequtil_convert.o sequtil_convert_imp.o sequtil_manip.o sequtil_tables.o sequtil_shared.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lxncbi -ldl -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsequtil.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib +/bin/ln -f libsequtil.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libsequtil.so +/bin/ln -f .sequtil.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.sequtil.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/sequtil' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/sequtil' +cd html/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=html UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/html' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/html' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/html' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/html' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/html' In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_servicep.h:38, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_dispd.h:37, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_dispd.c:36: @@ -12035,6 +12088,7 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] 92 | fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */ | ^~~~~~~~~~ +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/html TMPL=html -w -j4 --jobserver-auth=7,8 all In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:62, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_dispd.c:38: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_dispd.c: In function 's_Resolve': @@ -12053,6 +12107,7 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_dispd.c:205:9: note: in expansion of macro 'CORE_LOGF_X' 205 | CORE_LOGF_X(5, eLOG_Error, | ^~~~~~~~~~~ +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_servicep.h:38, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_lbosp.h:37, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_lbos.c:37: @@ -14929,6 +14984,32 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/parson.c:1119:18: note: length computed here 1119 | string_len = strlen(string); | ^~~~~~~~~~~~~~ +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +cd corelib/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=test_boost UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/corelib' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/corelib' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/corelib' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/corelib' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/corelib' +/usr/bin/make[4] (Makefile.test_boost.lib): Nothing to be done for `all'. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/corelib' +cd util/xregexp/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xregexp UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/xregexp' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/xregexp' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/xregexp' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/xregexp' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/xregexp' +/usr/bin/make[4] (Makefile.xregexp.lib): Nothing to be done for `all'. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/xregexp' +cd util/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=util UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /usr/include/string.h:495, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/parson.c:32: In function 'strncpy', @@ -14942,6 +15023,24 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/parson.c:140:12: note: length computed here 140 | return parson_strndup(string, strlen(string)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util' +/usr/bin/make[4] (Makefile.util.lib): Nothing to be done for `all'. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util' +cd serial/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=serial UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/serial' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/serial' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/serial' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/serial' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/serial' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial TMPL=serial -w -j4 --jobserver-auth=7,8 all In file included from /usr/include/string.h:495, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/parson.c:32: In function 'strncpy', @@ -14955,16 +15054,14 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/parson.c:140:12: note: length computed here 140 | return parson_strndup(string, strlen(string)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/logging' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/logging/message.cpp -o message.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/logging/listener.cpp -o listener.o -/bin/rm -f libxlogging.so .libxlogging.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libxlogging.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC message.o listener.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -ldl -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxlogging.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -/bin/ln -f libxlogging.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libxlogging.so -/bin/ln -f .xlogging.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.xlogging.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/logging' -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_namerd.c -o ncbi_namerd.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/parson.c -o parson.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_localip.c -o ncbi_localip.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket_cxx.cpp -o ncbi_socket_cxx.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_core_cxx.cpp -o ncbi_core_cxx.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/email_diag_handler.cpp -o email_diag_handler.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncIn file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_core_cxx.cpp:40: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) @@ -15077,25 +15174,7 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/logging' -cd html/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=html UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/html' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/html' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/html' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/html' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/html' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/html TMPL=html -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_namerd.c -o ncbi_namerd.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/parson.c -o parson.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_localip.c -o ncbi_localip.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_socket_cxx.cpp -o ncbi_socket_cxx.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_core_cxx.cpp -o ncbi_core_cxx.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/email_diag_handler.cpp -o email_diag_handler.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncmake[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/gene_info_reader/gene_info.cpp -o gene_info.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/gene_info_reader/gene_info_reader.cpp -o gene_info_reader.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/gene_info_reader/file_utils.cpp -o file_utils.o @@ -15106,41 +15185,47 @@ /bin/ln -f .gene_info.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.gene_info.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader' -cd corelib/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=test_boost UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/corelib' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/corelib' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/corelib' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/corelib' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/corelib' -/usr/bin/make[4] (Makefile.test_boost.lib): Nothing to be done for `all'. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/corelib' -cd util/xregexp/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xregexp UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/xregexp' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/xregexp' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/xregexp' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/xregexp' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/xregexp' -/usr/bin/make[4] (Makefile.xregexp.lib): Nothing to be done for `all'. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/xregexp' -cd objtools/blast/gene_info_reader/unit_test/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=gene_info_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/gene_info_reader/unit_test TMPL=gene_info_unit_test -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/gene_info_reader/unit_test/gene_info_test.cpp:31: +cd util/compress/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=compress UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/compress/api' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/compress/api' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/compress/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/compress/api' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/compress/api' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/util/compress/api TMPL=compress -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/serial' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/hookdata.cpp -o hookdata.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/hookdatakey.cpp -o hookdatakey.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/typeinfo.cpp -o typeinfo.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/objectinfo.cpp -o objectinfo.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/objectiter.cpp -o objectiter.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/objectio.cpp -o objectio.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Dmake[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/compress/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/util/compress/api/compress.cpp -o compress.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/util/compress/api/stream.cpp -o stream.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/util/compress/api/streambuf.cpp -o streambuf.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/util/compress/api/stream_util.cpp -o stream_util.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/util/compress/api/bzip2.cpp -o bzip2.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/util/compress/api/zlib.cpp -o zlib.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/html' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/html/node.cpp -o node.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/html/html.cpp -o html.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/html/htmlhelper.cpp -o htmlhelper.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/html/page.cpp -o page.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/html/pager.cpp -o pager.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/html/selection.cpp -o selection.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2bi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_conn_streambuf.cpp -o ncbi_conn_streambuf.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_conn_stream.cpp -o ncbi_conn_stream.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_conn_test.cpp -o ncbi_conn_test.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_misc.cpp -o ncbi_misc.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_namedpipe.cpp -o ncbi_namedpipe.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_namedpipe_connector.cpp -o ncbi_namedpipe_connector.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_pipe.cpp -o ncbi_pipe.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-pathIn file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_lbos_cxx.cpp:35: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -15231,12 +15316,12 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/gene_info_reader/unit_test/gene_info_test.cpp:31: +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_lbos_cxx.cpp:35: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/gene_info_reader/unit_test/gene_info_test.cpp:31: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_lbos_cxx.cpp:35: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -15252,38 +15337,52 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, - from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, - from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, - from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, - from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, - from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, - from /usr/include/boost/shared_ptr.hpp:17, - from /usr/include/boost/test/tools/assertion_result.hpp:21, - from /usr/include/boost/test/tools/old/impl.hpp:20, - from /usr/include/boost/test/test_tools.hpp:46, - from /usr/include/boost/test/unit_test.hpp:18, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/gene_info_reader/unit_test/gene_info_test.cpp:39: -/usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' - 14 | BOOST_HEADER_DEPRECATED( "" ) - | ^~~~~~~~~~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/html' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/html/node.cpp -o node.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/html/html.cpp -o html.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/html/htmlhelper.cpp -o htmlhelper.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/html/page.cpp -o page.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/html/pager.cpp -o pager.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/html/selection.cpp -o selection.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2bi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_conn_streambuf.cpp -o ncbi_conn_streambuf.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_conn_stream.cpp -o ncbi_conn_stream.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_conn_test.cpp -o ncbi_conn_test.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_misc.cpp -o ncbi_misc.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_namedpipe.cpp -o ncbi_namedpipe.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_namedpipe_connector.cpp -o ncbi_namedpipe_connector.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_pipe.cpp -o ncbi_pipe.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-pathIn file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_lbos_cxx.cpp:35: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/util/compress/api/tar.cpp: In member function 'unsigned int ncbi::CTarEntryInfo::GetMajor() const': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/util/compress/api/tar.cpp:480:19: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] + 480 | return (*((unsigned int*) &m_Stat.orig.st_rdev) >> 16) & 0xFFFF; + | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/util/compress/api/tar.cpp: In member function 'unsigned int ncbi::CTarEntryInfo::GetMinor() const': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/util/compress/api/tar.cpp:495:18: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] + 495 | return *((unsigned int*) &m_Stat.orig.st_rdev) & 0xFFFF; + | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/util/compress/api/tar.cpp: In member function 'ncbi::CTar::EStatus ncbi::CTar::x_ReadEntryInfo(bool, bool)': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/util/compress/api/tar.cpp:2398:15: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] + 2398 | *((unsigned int*) &m_Current.m_Stat.orig.st_rdev) = + | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/util/compress/api/archive_.cpp: In member function 'unsigned int ncbi::CArchiveEntryInfo::GetMajor() const': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/util/compress/api/archive_.cpp:91:19: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] + 91 | return (*((unsigned int*) &m_Stat.st_rdev) >> 16) & 0xFFFF; + | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/util/compress/api/archive_.cpp: In member function 'unsigned int ncbi::CArchiveEntryInfo::GetMinor() const': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/util/compress/api/archive_.cpp:107:18: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] + 107 | return *((unsigned int*) &m_Stat.st_rdev) & 0xFFFF; + | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/html/components.cpp -o components.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/html/commentdiag.cpp -o commentdiag.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/html/indentstream.cpp -o indentstream.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/html/html_exception.cpp -o html_exception.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/html/writer_htmlenc.cpp -o writer_htmlenc.o +/bin/rm -f libxhtml.so .libxhtml.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libxhtml.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC node.o html.o htmlhelper.o page.o pager.o selection.o components.o commentdiag.o indentstream.o html_exception.o writer_htmlenc.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lxncbi -ldl -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxhtml.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib +/bin/ln -f libxhtml.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libxhtml.so +/bin/ln -f .xhtml.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.xhtml.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/html' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/html' +cd cgi/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=cgi UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/cgi' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/cgi' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/cgi' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/cgi' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/cgi' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/cgi TMPL=cgi -w -j4 --jobserver-auth=7,8 all +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/run_with_lock: Adjusting base from make_cgi to make__cgi_common per /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/cgi/.#lock-map. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/cgi/ncbicgi.cpp:39: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -15374,12 +15473,12 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_lbos_cxx.cpp:35: +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/cgi/ncbicgi.cpp:39: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_lbos_cxx.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/cgi/ncbicgi.cpp:39: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -15395,333 +15494,10 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_pipe_connector.cpp -o ncbi_pipe_connector.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_conn_reader_writer.cpp -o ncbi_conn_reader_writer.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_userhost.cpp -o ncbi_userhost.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_http_session.cpp -o ncbi_http_session.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_lbos_cxx.cpp -o ncbi_lbos_cxx.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_monkey.cpp -o ncbi_monkey.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=gene_info_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/gene_info_reader/unit_test/gene_info_test.cpp -o gene_info_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie gene_info_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -ltest_boost -lgene_info -lxncbi -ldl -lm -lpthread -o gene_info_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f gene_info_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin -/bin/ln -f gene_info_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/gene_info_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' -cd util/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=util UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util' -/usr/bin/make[4] (Makefile.util.lib): Nothing to be done for `all'. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util' -cd serial/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=serial UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/serial' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/serial' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/serial' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/serial' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/serial' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial TMPL=serial -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. - -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/html/components.cpp -o components.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/html/commentdiag.cpp -o commentdiag.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/html/indentstream.cpp -o indentstream.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/html/html_exception.cpp -o html_exception.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/html/writer_htmlenc.cpp -o writer_htmlenc.o -/bin/rm -f libxhtml.so .libxhtml.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libxhtml.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC node.o html.o htmlhelper.o page.o pager.o selection.o components.o commentdiag.o indentstream.o html_exception.o writer_htmlenc.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lxncbi -ldl -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxhtml.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -/bin/ln -f libxhtml.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libxhtml.so -/bin/ln -f .xhtml.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.xhtml.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/html' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/html' -cd util/compress/api/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=compress UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/compress/api' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/compress/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/compress/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/compress/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/compress/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/util/compress/api TMPL=compress -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -In file included from /usr/include/c++/10/vector:72, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbithr_conf.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimtx.hpp:62, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbireg.hpp:49, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_core_cxx.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_service_cxx.cpp:35: -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ncbi::CSERV_Info}; _Tp = ncbi::CSERV_Info; _Alloc = std::allocator]': -/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 426 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/vector.tcc: In function 'std::vector ncbi::SERV_GetServers(const string&, TSERV_Type)': -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_gnutls.c:34: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connssl.h:47:25: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] - 47 | eNcbiCred_MbedTls = 0xC12CC16C - | ^~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:62, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_gnutls.c:35: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_gnutls.c: In function 's_GnuTlsInit': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' - 155 | DO_CORE_LOG(0, 0, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_gnutls.c:781:5: note: in expansion of macro 'CORE_LOG' - 781 | CORE_LOG(eLOG_Critical, "Unavailable feature GNUTLS"); - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_gnutls.c: In function 'NcbiSetupGnuTls': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' - 155 | DO_CORE_LOG(0, 0, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_gnutls.c:806:5: note: in expansion of macro 'CORE_LOG' - 806 | CORE_LOG(eLOG_Warning, "Unavailable feature GNUTLS"); - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_mbedtls.c:34: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connssl.h:47:25: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] - 47 | eNcbiCred_MbedTls = 0xC12CC16C - | ^~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:62, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_mbedtls.c:35: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_mbedtls.c: In function 'x_MbedTlsLogger': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:159:5: note: in expansion of macro 'DO_CORE_LOG' - 159 | DO_CORE_LOG(0, 0, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_mbedtls.c:169:5: note: in expansion of macro 'CORE_LOGF' - 169 | CORE_LOGF(eLOG_Note, ("MBEDTLS%d: %.*s", level, (int) len, message)); - | ^~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_mbedtls.c: In function 's_MbedTlsCreate': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' - 155 | DO_CORE_LOG(0, 0, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_mbedtls.c:325:9: note: in expansion of macro 'CORE_LOG' - 325 | CORE_LOG(eLOG_Error, "Server-side SSL not yet supported with MBEDTLS"); - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:159:5: note: in expansion of macro 'DO_CORE_LOG' - 159 | DO_CORE_LOG(0, 0, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_mbedtls.c:333:13: note: in expansion of macro 'CORE_LOGF' - 333 | CORE_LOGF(eLOG_Error, - | ^~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' - 155 | DO_CORE_LOG(0, 0, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_mbedtls.c:341:9: note: in expansion of macro 'CORE_LOG' - 341 | CORE_LOG(eLOG_Critical, "MBEDTLS credentials not implemented"); - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_mbedtls.c: In function 's_MbedTlsInit': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:159:5: note: in expansion of macro 'DO_CORE_LOG' - 159 | DO_CORE_LOG(0, 0, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_mbedtls.c:657:9: note: in expansion of macro 'CORE_LOGF' - 657 | CORE_LOGF(eLOG_Critical, - | ^~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:159:5: note: in expansion of macro 'DO_CORE_LOG' - 159 | DO_CORE_LOG(0, 0, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_mbedtls.c:687:9: note: in expansion of macro 'CORE_LOGF' - 687 | CORE_LOGF(level, ("%s V%s (LogLevel=%d)", - | ^~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/compress/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/util/compress/api/compress.cpp -o compress.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/util/compress/api/stream.cpp -o stream.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/util/compress/api/streambuf.cpp -o streambuf.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/util/compress/api/stream_util.cpp -o stream_util.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/util/compress/api/bzip2.cpp -o bzip2.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/util/compress/api/zlib.cpp -o zlib.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_tls.c:34: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connssl.h:47:25: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] - 47 | eNcbiCred_MbedTls = 0xC12CC16C - | ^~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:62, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_tls.c:35: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_tls.c: In function 's_NoTlsInit': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' - 155 | DO_CORE_LOG(0, 0, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_tls.c:60:5: note: in expansion of macro 'CORE_LOG' - 60 | CORE_LOG(eLOG_Critical, "SSL has been explicitly disabled"); - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_tls.c: In function 'x_SetupNoTls': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' - 155 | DO_CORE_LOG(0, 0, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_tls.c:71:5: note: in expansion of macro 'CORE_LOG' - 71 | CORE_LOG(eLOG_Trace, "SSL has been explicitly disabled"); - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_tls.c: In function 'NcbiSetupTls': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:159:5: note: in expansion of macro 'DO_CORE_LOG' - 159 | DO_CORE_LOG(0, 0, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_tls.c:93:17: note: in expansion of macro 'CORE_LOGF' - 93 | CORE_LOGF(eLOG_Critical, ("Unknown TLS provider \"%s\"", str)); - | ^~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' - 155 | DO_CORE_LOG(0, 0, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_tls.c:97:13: note: in expansion of macro 'CORE_LOG' - 97 | CORE_LOG(eLOG_Critical, "No TLS support included in this build"); - | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/serial' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/hookdata.cpp -o hookdata.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/hookdatakey.cpp -o hookdatakey.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/typeinfo.cpp -o typeinfo.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/objectinfo.cpp -o objectinfo.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/objectiter.cpp -o objectiter.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/objectio.cpp -o objectio.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Dblast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_service_cxx.cpp -o ncbi_service_cxx.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_localip_cxx.cpp -o ncbi_localip_cxx.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_blowfish.c -o ncbi_blowfish.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_usage_report.cpp -o ncbi_usage_report.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_gnutls.c -o ncbi_gnutls.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_mbedtls.c -o ncbi_mbedtls.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_tls.c -o ncbi_tls.o -/bin/rm -f libxconnect.so .libxconnect.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libxconnect.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC ncbi_lbsmd_stub.o ncbi_ansi_ext.o ncbi_types.o ncbi_core.o ncbi_priv.o ncbi_util.o ncbi_buffer.o ncbi_socket.o ncbi_connector.o ncbi_connection.o ncbi_connutil.o ncbi_ipv6.o ncbi_server_info.o ncbi_host_info.o ncbi_service.o ncbi_sendmail.o ncbi_base64.o ncbi_heapmgr.o ncbi_lb.o ncbi_socket_connector.o ncbi_file_connector.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_service_connector.o ncbi_ftp_connector.o ncbi_version.o ncbi_iprange.o ncbi_local.o ncbi_dispd.o ncbi_lbos.o ncbi_linkerd.o ncbi_namerd.o parson.o ncbi_localip.o ncbi_socket_cxx.o ncbi_core_cxx.o email_diag_handler.o ncbi_conn_streambuf.o ncbi_conn_stream.o ncbi_conn_test.o ncbi_misc.o ncbi_namedpipe.o ncbi_namedpipe_connector.o ncbi_pipe.o ncbi_pipe_connector.o ncbi_conn_reader_writer.o ncbi_userhost.o ncbi_http_session.o ncbi_lbos_cxx.o ncbi_monkey.o ncbi_service_cxx.o ncbi_localip_cxx.o ncbi_blowfish.o ncbi_usage_report.o ncbi_gnutls.o ncbi_mbedtls.o ncbi_tls.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lxncbi -lmbedtls -lmbedx509 -lmbedcrypto -lz -ldl -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxconnect.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -/bin/ln -f libxconnect.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libxconnect.so -/bin/ln -f .xconnect.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.xconnect.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect' -cd cgi/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=cgi UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/cgi' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/cgi' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/cgi' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/cgi' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/cgi' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/cgi TMPL=cgi -w -j3 --jobserver-auth=7,8 all -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/run_with_lock: Adjusting base from make_cgi to make__cgi_common per /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/cgi/.#lock-map. -make[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/cgi/ncbicgi.cpp:39: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/cgi/cgictx.cpp:40: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -15812,12 +15588,16 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/cgi/ncbicgi.cpp:39: +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/cgi/cgictx.cpp:40: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/cgi/ncbicgi.cpp:39: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/cgi/cgictx.cpp:40: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -15833,10 +15613,34 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/cgi/cgictx.cpp:40: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:37, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/cgi/cgictx.cpp:40: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/cgi/ncbicgir.cpp:39: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -15929,14 +15733,14 @@ | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:37, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/cgi/cgictx.cpp:40: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/cgi/ncbicgir.cpp:39: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:37, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/cgi/cgictx.cpp:40: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/cgi/ncbicgir.cpp:39: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -15953,14 +15757,14 @@ 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/cgi/cgictx.cpp:40: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/cgi/ncbicgir.cpp:39: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:37, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/cgi/cgictx.cpp:40: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/cgi/ncbicgir.cpp:39: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -16119,39 +15923,13 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/util/compress/api/tar.cpp: In member function 'unsigned int ncbi::CTarEntryInfo::GetMajor() const': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/util/compress/api/tar.cpp:480:19: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] - 480 | return (*((unsigned int*) &m_Stat.orig.st_rdev) >> 16) & 0xFFFF; - | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/util/compress/api/tar.cpp: In member function 'unsigned int ncbi::CTarEntryInfo::GetMinor() const': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/util/compress/api/tar.cpp:495:18: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] - 495 | return *((unsigned int*) &m_Stat.orig.st_rdev) & 0xFFFF; - | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/util/compress/api/tar.cpp: In member function 'ncbi::CTar::EStatus ncbi::CTar::x_ReadEntryInfo(bool, bool)': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/util/compress/api/tar.cpp:2398:15: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] - 2398 | *((unsigned int*) &m_Current.m_Stat.orig.st_rdev) = - | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/cgi/ncbicgi.cpp: In member function 'void ncbi::CCgiRequest::GetCGIEntries(ncbi::CEntryCollector_Base&) const': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/cgi/ncbicgi.cpp:1676:16: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=] - 1676 | catch (CStringException) { - | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/cgi/ncbicgi.cpp: In member function 'ncbi::CStringUTF8 ncbi::CCgiEntry::GetValueAsUTF8(ncbi::CCgiEntry::EOnCharsetError) const': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/cgi/ncbicgi.cpp:1933:12: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] - 1933 | catch (CException) { - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/cgi/cgiapp.cpp: In member function 'bool ncbi::CCgiApplication::x_ProcessVersionRequest()': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/cgi/cgiapp.cpp:1904:12: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=] - 1904 | catch (CStringException) { - | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/util/compress/api/archive_.cpp: In member function 'unsigned int ncbi::CArchiveEntryInfo::GetMajor() const': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/util/compress/api/archive_.cpp:91:19: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] - 91 | return (*((unsigned int*) &m_Stat.st_rdev) >> 16) & 0xFFFF; - | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/util/compress/api/archive_.cpp: In member function 'unsigned int ncbi::CArchiveEntryInfo::GetMinor() const': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/util/compress/api/archive_.cpp:107:18: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] - 107 | return *((unsigned int*) &m_Stat.st_rdev) & 0xFFFF; - | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/list:63, +/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_pipe_connector.cpp -o ncbi_pipe_connector.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_conn_reader_writer.cpp -o ncbi_conn_reader_writer.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_userhost.cpp -o ncbi_userhost.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_http_session.cpp -o ncbi_http_session.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_lbos_cxx.cpp -o ncbi_lbos_cxx.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_monkey.cpp -o ncbi_monkey.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-In file included from /usr/include/c++/10/list:63, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbi_stack.hpp:36, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:42, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, @@ -16164,20 +15942,6 @@ /usr/include/c++/10/bits/stl_list.h:1909:8: note: parameter passing for argument of type 'std::__cxx11::list::iterator' changed in GCC 7.1 1909 | _M_insert(iterator __position, _Args&&... __args) | ^~~~~~~~~ -/usr/include/c++/10/bits/stl_list.h: In member function 'virtual std::unique_ptr > ncbi::CArchive::AppendFileFromMemory(const string&, void*, size_t, ncbi::CArchive::ELevel, const string&)': -/usr/include/c++/10/bits/stl_list.h:1212:24: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 - 1212 | { this->_M_insert(end(), __x); } - | ~~~~~~~~~~~~~~~^~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_list.h: In member function 'std::unique_ptr > ncbi::CArchive::x_Append(const string&, ncbi::CArchive::ELevel, const string&, const TEntries*)': -/usr/include/c++/10/bits/stl_list.h:1212:24: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 - 1212 | { this->_M_insert(end(), __x); } - | ~~~~~~~~~~~~~~~^~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_list.h:1212:24: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 - 1212 | { this->_M_insert(end(), __x); } - | ~~~~~~~~~~~~~~~^~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_list.h:1212:24: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 - 1212 | { this->_M_insert(end(), __x); } - | ~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/util/compress/api/archive_zip.cpp:45: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/util/compress/api/miniz/miniz.c: In function 'ncbi::tinfl_status ncbi::tinfl_decompress(ncbi::tinfl_decompressor*, const mz_uint8*, size_t*, ncbi::mz_uint8*, ncbi::mz_uint8*, size_t*, ncbi::mz_uint32)': /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/util/compress/api/miniz/miniz.c:1531:9: warning: this 'for' clause does not guard... [-Wmisleading-indentation] @@ -16186,6 +15950,10 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/util/compress/api/miniz/miniz.c:1531:47: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 1531 | for ( i = 0; i <= 143; ++i) *p++ = 8; for ( ; i <= 255; ++i) *p++ = 9; for ( ; i <= 279; ++i) *p++ = 7; for ( ; i <= 287; ++i) *p++ = 8; | ^~~ +/usr/include/c++/10/bits/stl_list.h: In member function 'virtual std::unique_ptr > ncbi::CArchive::AppendFileFromMemory(const string&, void*, size_t, ncbi::CArchive::ELevel, const string&)': +/usr/include/c++/10/bits/stl_list.h:1212:24: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 + 1212 | { this->_M_insert(end(), __x); } + | ~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/util/compress/api/miniz/miniz.c: In function 'void ncbi::tdefl_find_match(ncbi::tdefl_compressor*, ncbi::mz_uint, ncbi::mz_uint, ncbi::mz_uint, ncbi::mz_uint*, ncbi::mz_uint*)': /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/util/compress/api/miniz/miniz.c:2361:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2361 | if (!dist) break; p = s; q = d->m_dict + probe_pos; for (probe_len = 0; probe_len < max_match_len; probe_len++) if (*p++ != *q++) break; @@ -16193,10 +15961,305 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/util/compress/api/miniz/miniz.c:2361:23: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | if (!dist) break; p = s; q = d->m_dict + probe_pos; for (probe_len = 0; probe_len < max_match_len; probe_len++) if (*p++ != *q++) break; | ^ +/usr/include/c++/10/bits/stl_list.h: In member function 'std::unique_ptr > ncbi::CArchive::x_Append(const string&, ncbi::CArchive::ELevel, const string&, const TEntries*)': +/usr/include/c++/10/bits/stl_list.h:1212:24: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 + 1212 | { this->_M_insert(end(), __x); } + | ~~~~~~~~~~~~~~~^~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_list.h:1212:24: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 + 1212 | { this->_M_insert(end(), __x); } + | ~~~~~~~~~~~~~~~^~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_list.h:1212:24: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 + 1212 | { this->_M_insert(end(), __x); } + | ~~~~~~~~~~~~~~~^~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/cgi/ncbicgi.cpp: In member function 'void ncbi::CCgiRequest::GetCGIEntries(ncbi::CEntryCollector_Base&) const': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/cgi/ncbicgi.cpp:1676:16: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=] + 1676 | catch (CStringException) { + | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/cgi/ncbicgi.cpp: In member function 'ncbi::CStringUTF8 ncbi::CCgiEntry::GetValueAsUTF8(ncbi::CCgiEntry::EOnCharsetError) const': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/cgi/ncbicgi.cpp:1933:12: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] + 1933 | catch (CException) { + | ^~~~~~~~~~ +In file included from /usr/include/c++/10/vector:72, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbithr_conf.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimtx.hpp:62, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbireg.hpp:49, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_core_cxx.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_service_cxx.cpp:35: +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ncbi::CSERV_Info}; _Tp = ncbi::CSERV_Info; _Alloc = std::allocator]': +/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 426 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/vector.tcc: In function 'std::vector ncbi::SERV_GetServers(const string&, TSERV_Type)': +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_gnutls.c:34: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connssl.h:47:25: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] + 47 | eNcbiCred_MbedTls = 0xC12CC16C + | ^~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:62, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_gnutls.c:35: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_gnutls.c: In function 's_GnuTlsInit': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' + 155 | DO_CORE_LOG(0, 0, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_gnutls.c:781:5: note: in expansion of macro 'CORE_LOG' + 781 | CORE_LOG(eLOG_Critical, "Unavailable feature GNUTLS"); + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_gnutls.c: In function 'NcbiSetupGnuTls': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' + 155 | DO_CORE_LOG(0, 0, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_gnutls.c:806:5: note: in expansion of macro 'CORE_LOG' + 806 | CORE_LOG(eLOG_Warning, "Unavailable feature GNUTLS"); + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_mbedtls.c:34: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connssl.h:47:25: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] + 47 | eNcbiCred_MbedTls = 0xC12CC16C + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/cgi/cgiapp.cpp: In member function 'bool ncbi::CCgiApplication::x_ProcessVersionRequest()': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/cgi/cgiapp.cpp:1904:12: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=] + 1904 | catch (CStringException) { + | ^~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:62, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_mbedtls.c:35: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_mbedtls.c: In function 'x_MbedTlsLogger': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:159:5: note: in expansion of macro 'DO_CORE_LOG' + 159 | DO_CORE_LOG(0, 0, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_mbedtls.c:169:5: note: in expansion of macro 'CORE_LOGF' + 169 | CORE_LOGF(eLOG_Note, ("MBEDTLS%d: %.*s", level, (int) len, message)); + | ^~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_mbedtls.c: In function 's_MbedTlsCreate': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' + 155 | DO_CORE_LOG(0, 0, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_mbedtls.c:325:9: note: in expansion of macro 'CORE_LOG' + 325 | CORE_LOG(eLOG_Error, "Server-side SSL not yet supported with MBEDTLS"); + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:159:5: note: in expansion of macro 'DO_CORE_LOG' + 159 | DO_CORE_LOG(0, 0, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_mbedtls.c:333:13: note: in expansion of macro 'CORE_LOGF' + 333 | CORE_LOGF(eLOG_Error, + | ^~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' + 155 | DO_CORE_LOG(0, 0, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_mbedtls.c:341:9: note: in expansion of macro 'CORE_LOG' + 341 | CORE_LOG(eLOG_Critical, "MBEDTLS credentials not implemented"); + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_mbedtls.c: In function 's_MbedTlsInit': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:159:5: note: in expansion of macro 'DO_CORE_LOG' + 159 | DO_CORE_LOG(0, 0, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_mbedtls.c:657:9: note: in expansion of macro 'CORE_LOGF' + 657 | CORE_LOGF(eLOG_Critical, + | ^~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:159:5: note: in expansion of macro 'DO_CORE_LOG' + 159 | DO_CORE_LOG(0, 0, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_mbedtls.c:687:9: note: in expansion of macro 'CORE_LOGF' + 687 | CORE_LOGF(level, ("%s V%s (LogLevel=%d)", + | ^~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_tls.c:34: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_connssl.h:47:25: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] + 47 | eNcbiCred_MbedTls = 0xC12CC16C + | ^~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:62, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_tls.c:35: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_tls.c: In function 's_NoTlsInit': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' + 155 | DO_CORE_LOG(0, 0, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_tls.c:60:5: note: in expansion of macro 'CORE_LOG' + 60 | CORE_LOG(eLOG_Critical, "SSL has been explicitly disabled"); + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_tls.c: In function 'x_SetupNoTls': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' + 155 | DO_CORE_LOG(0, 0, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_tls.c:71:5: note: in expansion of macro 'CORE_LOG' + 71 | CORE_LOG(eLOG_Trace, "SSL has been explicitly disabled"); + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_tls.c: In function 'NcbiSetupTls': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:159:5: note: in expansion of macro 'DO_CORE_LOG' + 159 | DO_CORE_LOG(0, 0, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_tls.c:93:17: note: in expansion of macro 'CORE_LOGF' + 93 | CORE_LOGF(eLOG_Critical, ("Unknown TLS provider \"%s\"", str)); + | ^~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' + 155 | DO_CORE_LOG(0, 0, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_tls.c:97:13: note: in expansion of macro 'CORE_LOG' + 97 | CORE_LOG(eLOG_Critical, "No TLS support included in this build"); + | ^~~~~~~~ +_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/typeref.cpp -o typeref.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/typemap.cpp -o typemap.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/stdtypes.cpp -o stdtypes.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/enumerated.cpp -o enumerated.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/ptrinfo.cpp -o ptrinfo.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/autoptrinfo.cpp -o autoptrinfo.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/continfo.cpp -o continfo.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-pblast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_service_cxx.cpp -o ncbi_service_cxx.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_localip_cxx.cpp -o ncbi_localip_cxx.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_blowfish.c -o ncbi_blowfish.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_usage_report.cpp -o ncbi_usage_report.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_gnutls.c -o ncbi_gnutls.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_mbedtls.c -o ncbi_mbedtls.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/ncbi_tls.c -o ncbi_tls.o +/bin/rm -f libxconnect.so .libxconnect.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libxconnect.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC ncbi_lbsmd_stub.o ncbi_ansi_ext.o ncbi_types.o ncbi_core.o ncbi_priv.o ncbi_util.o ncbi_buffer.o ncbi_socket.o ncbi_connector.o ncbi_connection.o ncbi_connutil.o ncbi_ipv6.o ncbi_server_info.o ncbi_host_info.o ncbi_service.o ncbi_sendmail.o ncbi_base64.o ncbi_heapmgr.o ncbi_lb.o ncbi_socket_connector.o ncbi_file_connector.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_service_connector.o ncbi_ftp_connector.o ncbi_version.o ncbi_iprange.o ncbi_local.o ncbi_dispd.o ncbi_lbos.o ncbi_linkerd.o ncbi_namerd.o parson.o ncbi_localip.o ncbi_socket_cxx.o ncbi_core_cxx.o email_diag_handler.o ncbi_conn_streambuf.o ncbi_conn_stream.o ncbi_conn_test.o ncbi_misc.o ncbi_namedpipe.o ncbi_namedpipe_connector.o ncbi_pipe.o ncbi_pipe_connector.o ncbi_conn_reader_writer.o ncbi_userhost.o ncbi_http_session.o ncbi_lbos_cxx.o ncbi_monkey.o ncbi_service_cxx.o ncbi_localip_cxx.o ncbi_blowfish.o ncbi_usage_report.o ncbi_gnutls.o ncbi_mbedtls.o ncbi_tls.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lxncbi -lmbedtls -lmbedx509 -lmbedcrypto -lz -ldl -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxconnect.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib +/bin/ln -f libxconnect.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libxconnect.so +/bin/ln -f .xconnect.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.xconnect.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect' +cd objtools/blast/gene_info_reader/unit_test/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=gene_info_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/gene_info_reader/unit_test TMPL=gene_info_unit_test -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +In file included from /usr/include/c++/10/list:63, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbi_stack.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbitime.hpp:65, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbi_system.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/util/compress/api/tar.cpp:53: +/usr/include/c++/10/bits/stl_list.h: In member function 'void std::__cxx11::list<_Tp, _Alloc>::_M_insert(std::__cxx11::list<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const ncbi::CTarEntryInfo&}; _Tp = ncbi::CTarEntryInfo; _Alloc = std::allocator]': +/usr/include/c++/10/bits/stl_list.h:1909:8: note: parameter passing for argument of type 'std::__cxx11::list::iterator' changed in GCC 7.1 + 1909 | _M_insert(iterator __position, _Args&&... __args) + | ^~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/cgi/ncbicgir.cpp:39: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/gene_info_reader/unit_test/gene_info_test.cpp:31: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -16287,16 +16350,12 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/cgi/ncbicgir.cpp:39: +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/gene_info_reader/unit_test/gene_info_test.cpp:31: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/cgi/ncbicgir.cpp:39: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/gene_info_reader/unit_test/gene_info_test.cpp:31: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -16312,46 +16371,6 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/cgi/ncbicgir.cpp:39: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/cgi/ncbicgir.cpp:39: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/list:63, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbi_stack.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbitime.hpp:65, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbi_system.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/util/compress/api/tar.cpp:53: -/usr/include/c++/10/bits/stl_list.h: In member function 'void std::__cxx11::list<_Tp, _Alloc>::_M_insert(std::__cxx11::list<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const ncbi::CTarEntryInfo&}; _Tp = ncbi::CTarEntryInfo; _Alloc = std::allocator]': -/usr/include/c++/10/bits/stl_list.h:1909:8: note: parameter passing for argument of type 'std::__cxx11::list::iterator' changed in GCC 7.1 - 1909 | _M_insert(iterator __position, _Args&&... __args) - | ^~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:37, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, @@ -16495,14 +16514,29 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/typeref.cpp -o typeref.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/typemap.cpp -o typemap.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/stdtypes.cpp -o stdtypes.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/enumerated.cpp -o enumerated.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/ptrinfo.cpp -o ptrinfo.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/autoptrinfo.cpp -o autoptrinfo.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/continfo.cpp -o continfo.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-pmake[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/cgi' +ath/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/stltypes.cpp -o stltypes.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/memberid.cpp -o memberid.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/memberlist.cpp -o memberlist.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/item.cpp -o item.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/classinfob.cpp -o classinfob.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/member.cpp -o member.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-pathIn file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, + from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, + from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, + from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, + from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, + from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, + from /usr/include/boost/shared_ptr.hpp:17, + from /usr/include/boost/test/tools/assertion_result.hpp:21, + from /usr/include/boost/test/tools/old/impl.hpp:20, + from /usr/include/boost/test/test_tools.hpp:46, + from /usr/include/boost/test/unit_test.hpp:18, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/gene_info_reader/unit_test/gene_info_test.cpp:39: +/usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' + 14 | BOOST_HEADER_DEPRECATED( "" ) + | ^~~~~~~~~~~~~~~~~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/cgi' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/cgi/ncbicgi.cpp -o ncbicgi.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/cgi/cgiapp.cpp -o cgiapp.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/cgi/cgictx.cpp -o cgictx.o @@ -16647,23 +16681,7 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_list.h: In member function 'std::unique_ptr > ncbi::CTar::x_Append(const string&, const TEntries*)': -/usr/include/c++/10/bits/stl_list.h:1212:24: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 - 1212 | { this->_M_insert(end(), __x); } - | ~~~~~~~~~~~~~~~^~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_list.h:1212:24: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 - 1212 | { this->_M_insert(end(), __x); } - | ~~~~~~~~~~~~~~~^~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_list.h:1212:24: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 - 1212 | { this->_M_insert(end(), __x); } - | ~~~~~~~~~~~~~~~^~~~~~~~~~~~ -ath/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/stltypes.cpp -o stltypes.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/memberid.cpp -o memberid.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/memberlist.cpp -o memberlist.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/item.cpp -o item.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/classinfob.cpp -o classinfob.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/member.cpp -o member.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-pathIn file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:37, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp_cached.hpp:35, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/cgi/cgiapp_cached.cpp:34: @@ -16806,54 +16824,16 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/util/compress/api/lzo.cpp -o lzo.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/util/compress/api/reader_zlib.cpp -o reader_zlib.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/util/compress/api/tar.cpp -o tar.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/util/compress/api/archive.cpp -o archive.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/util/compress/api/archive_.cpp -o archive_.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/util/compress/api/archive_zip.cpp -o archive_zip.o -/bin/rm -f libxcompress.so .libxcompress.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libxcompress.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC compress.o stream.o streambuf.o stream_util.o bzip2.o zlib.o lzo.o reader_zlib.o tar.o archive.o archive_.o archive_zip.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lxutil -lxncbi -lbz2 -lz -ldl -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcompress.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -/bin/ln -f libxcompress.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libxcompress.so -/bin/ln -f .xcompress.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.xcompress.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/compress/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/compress/api' -cd algo/blast/core/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=blast UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/core' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/core' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/core' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/core' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/core' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/core TMPL=blast -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/core/aa_ungapped.c: In function 's_BlastAaWordFinder_TwoHit': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/core/aa_ungapped.c:484:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] - 484 | scansub = (TAaScanSubjectFunction)(lookup->scansub_callback); - | ^ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/core/aa_ungapped.c:491:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] - 491 | scansub = (TAaScanSubjectFunction)(lookup->scansub_callback); - | ^ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/core/aa_ungapped.c: In function 's_BlastAaWordFinder_OneHit': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/core/aa_ungapped.c:751:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] - 751 | scansub = (TAaScanSubjectFunction)(lookup->scansub_callback); - | ^ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/core/aa_ungapped.c:758:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] - 758 | scansub = (TAaScanSubjectFunction)(lookup->scansub_callback); - | ^ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/core/blast_engine.c: In function 'BLAST_PreliminarySearchEngine': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/core/blast_engine.c:1366:9: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] - 1366 | (T_MB_IdbCheckOid)lookup_wrap->check_index_oid; - | ^ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/core/blast_engine.c:1504:22: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] - 1504 | ((T_MB_IdxEndSearchIndication)( - | ^ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/core/blast_engine.c:1591:10: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] - 1591 | ((T_MB_IdxEndSearchIndication)( - | ^ +/usr/include/c++/10/bits/stl_list.h: In member function 'std::unique_ptr > ncbi::CTar::x_Append(const string&, const TEntries*)': +/usr/include/c++/10/bits/stl_list.h:1212:24: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 + 1212 | { this->_M_insert(end(), __x); } + | ~~~~~~~~~~~~~~~^~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_list.h:1212:24: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 + 1212 | { this->_M_insert(end(), __x); } + | ~~~~~~~~~~~~~~~^~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_list.h:1212:24: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 + 1212 | { this->_M_insert(end(), __x); } + | ~~~~~~~~~~~~~~~^~~~~~~~~~~~ FY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/cgi/cgi_run.cpp -o cgi_run.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/cgi/cgi_util.cpp -o cgi_util.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/cgi/cgi_serial.cpp -o cgi_serial.o @@ -16999,14 +16979,87 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=gene_info_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/gene_info_reader/unit_test/gene_info_test.cpp -o gene_info_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie gene_info_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -ltest_boost -lgene_info -lxncbi -ldl -lm -lpthread -o gene_info_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f gene_info_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin +/bin/ln -f gene_info_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/gene_info_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' +cd algo/blast/core/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=blast UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/core' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/core' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/core' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/core' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/core' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/core TMPL=blast -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/core/aa_ungapped.c: In function 's_BlastAaWordFinder_TwoHit': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/core/aa_ungapped.c:484:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] + 484 | scansub = (TAaScanSubjectFunction)(lookup->scansub_callback); + | ^ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/core/aa_ungapped.c:491:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] + 491 | scansub = (TAaScanSubjectFunction)(lookup->scansub_callback); + | ^ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/core/aa_ungapped.c: In function 's_BlastAaWordFinder_OneHit': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/core/aa_ungapped.c:751:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] + 751 | scansub = (TAaScanSubjectFunction)(lookup->scansub_callback); + | ^ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/core/aa_ungapped.c:758:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] + 758 | scansub = (TAaScanSubjectFunction)(lookup->scansub_callback); + | ^ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/core/blast_engine.c: In function 'BLAST_PreliminarySearchEngine': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/core/blast_engine.c:1366:9: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] + 1366 | (T_MB_IdbCheckOid)lookup_wrap->check_index_oid; + | ^ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/core/blast_engine.c:1504:22: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] + 1504 | ((T_MB_IdxEndSearchIndication)( + | ^ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/core/blast_engine.c:1591:10: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] + 1591 | ((T_MB_IdxEndSearchIndication)( + | ^ +/ncbi-blast+-2.11.0+ds/c++/src/serial/classinfo.cpp -o classinfo.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/variant.cpp -o variant.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/choice.cpp -o choice.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/choiceptr.cpp -o choiceptr.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/aliasinfo.cpp -o aliasinfo.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/objistr.cpp -o objistr.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/objostr.cpp -o objostr.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/util/compress/api/lzo.cpp -o lzo.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/util/compress/api/reader_zlib.cpp -o reader_zlib.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/util/compress/api/tar.cpp -o tar.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/util/compress/api/archive.cpp -o archive.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/util/compress/api/archive_.cpp -o archive_.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/util/compress/api/archive_zip.cpp -o archive_zip.o +/bin/rm -f libxcompress.so .libxcompress.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libxcompress.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC compress.o stream.o streambuf.o stream_util.o bzip2.o zlib.o lzo.o reader_zlib.o tar.o archive.o archive_.o archive_zip.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lxutil -lxncbi -lbz2 -lz -lmake[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/core' /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/core/aa_ungapped.c -o aa_ungapped.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/core/blast_diagnostics.c -o blast_diagnostics.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/core/blast_engine.c -o blast_engine.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/core/blast_extend.c -o blast_extend.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/core/blast_filter.c -o blast_filter.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/core/blast_gapalign.c -o blast_gapalign.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/core/blast_hits.c -o blast_hits.o +/usr/bin/gcc -std=gnu11 -fgnu89-inlinedl -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcompress.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib +/bin/ln -f libxcompress.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libxcompress.so +/bin/ln -f .xcompress.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.xcompress.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/compress/api' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/compress/api' +cd connect/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xthrserv UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect TMPL=xthrserv -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. + -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/core/blast_hits.c -o blast_hits.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/core/blast_hspstream.c -o blast_hspstream.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/core/blast_itree.c -o blast_itree.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/core/blast_kappa.c -o blast_kappa.o @@ -17160,6 +17213,20 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/core/blast_nascan.c:3006:12: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] 3006 | return (void *)s_MBScanSubject_Any; | ^ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/threaded_server.cpp:47:54: warning: 'CThreadedServer' is deprecated [-Wdeprecated-declarations] + 47 | CSocketRequest(CThreadedServer& server, SOCK sock) // NCBI_FAKE_WARNING + | ^ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/threaded_server.cpp:33: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/threaded_server.hpp:77:44: note: declared here + 77 | NCBI_DEPRECATED_CLASS NCBI_XCONNECT_EXPORT CThreadedServer + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/threaded_server.cpp:52:22: warning: 'CThreadedServer' is deprecated [-Wdeprecated-declarations] + 52 | CThreadedServer& m_Server; // NCBI_FAKE_WARNING + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/threaded_server.cpp:33: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/threaded_server.hpp:77:44: note: declared here + 77 | NCBI_DEPRECATED_CLASS NCBI_XCONNECT_EXPORT CThreadedServer + | ^~~~~~~~~~~~~~~ specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/core/blast_aascan.c -o blast_aascan.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/core/blast_nalookup.c -o blast_nalookup.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/core/blast_nascan.c -o blast_nascan.o @@ -17298,92 +17365,36 @@ /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/core/phi_gapalign.c -o phi_gapalign.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/core/phi_lookup.c -o phi_lookup.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/core/blast_parameters.c -o blast_parameters.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/core/blast_posit.c -o blast_posit.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_Lmake[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/threaded_server.cpp -o threaded_server.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/server.cpp -o server.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/server_monitor.cpp -o server_monitor.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/connection_pool.cpp -o connection_pool.o +/bin/rm -f libxthrserv.so .libxthrserv.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libxthrserv.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC threaded_server.o server.o server_monitor.o connection_pool.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lxutil -lxconnect -lmbedtls -lmbedx509 -lmbedcrypto -lz +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxthrserv.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib +/bin/ln -f libxthrserv.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libxthrserv.so +/bin/ln -f .xthrserv.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.xthrserv.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect' +cd connect/services/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xconnserv UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect/services' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect/services' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect/services' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect/services' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect/services' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/services TMPL=xconnserv -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +ARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/core/blast_posit.c -o blast_posit.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/core/blast_program.c -o blast_program.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/core/blast_query_info.c -o blast_query_info.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/core/blast_tune.c -o blast_tune.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/core/blast_sw.c -o blast_sw.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/core/blast_dynarray.c -o blast_dynarray.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/rep/ncbi-blast+-2.11.0+ds/c++/src/serial/classinfo.cpp -o classinfo.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/variant.cpp -o variant.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/choice.cpp -o choice.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/choiceptr.cpp -o choiceptr.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/aliasinfo.cpp -o aliasinfo.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/objistr.cpp -o objistr.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/objostr.cpp -o objostr.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2roducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/core/split_query.c -o split_query.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/core/gencode_singleton.c -o gencode_singleton.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/core/index_ungapped.c -o index_ungapped.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/core/blast_traceback_mt_priv.c -o blast_traceback_mt_priv.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/core/blast_hspstream_mt_utils.c -o blast_hspstream_mt_utils.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/core/boost_erf.c -o boost_erf.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/alg-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/cgi/user_agent.cpp -o user_agent.o -/bin/rm -f libxcgi.so .libxcgi.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libxcgi.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC ncbicgi.o cgiapp.o cgictx.o ncbicgir.o ncbires.o ref_args.o cgi_run.o cgi_util.o cgi_serial.o cgi_session.o cgi_exception.o cgiapp_cached.o cgi_entry_reader.o user_agent.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lxutil -lxncbi -ldl -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcgi.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -/bin/ln -f libxcgi.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libxcgi.so -/bin/ln -f .xcgi.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.xcgi.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/cgi' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/cgi' -cd connect/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xthrserv UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect TMPL=xthrserv -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -o/blast/core/jumper.c -o jumper.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/core/hspfilter_mapper.c -o hspfilter_mapper.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/core/spliced_hits.c -o spliced_hits.o -/bin/rm -f libblast.so .libblast.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libblast.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC aa_ungapped.o blast_diagnostics.o blast_engine.o blast_extend.o blast_filter.o blast_gapalign.o blast_hits.o blast_hspstream.o blast_itree.o blast_kappa.o blast_lookup.o blast_aalookup.o blast_aascan.o blast_nalookup.o blast_nascan.o blast_message.o blast_options.o blast_psi.o na_ungapped.o blast_psi_priv.o blast_seg.o blast_seqsrc.o blast_setup.o blast_stat.o blast_traceback.o blast_util.o gapinfo.o greedy_align.o hspfilter_collector.o hspfilter_besthit.o hspfilter_culling.o link_hsps.o lookup_util.o lookup_wrap.o matrix_freq_ratios.o ncbi_std.o ncbi_math.o blast_encoding.o pattern.o phi_extend.o phi_gapalign.o phi_lookup.o blast_parameters.o blast_posit.o blast_program.o blast_query_info.o blast_tune.o blast_sw.o blast_dynarray.o split_query.o gencode_singleton.o index_ungapped.o blast_traceback_mt_priv.o blast_hspstream_mt_utils.o boost_erf.o jumper.o hspfilter_mapper.o spliced_hits.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lcomposition_adjustment -lxconnect -ltables -ldl -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -/bin/ln -f libblast.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libblast.so -/bin/ln -f .blast.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.blast.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/core' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/core' -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/threaded_server.cpp:47:54: warning: 'CThreadedServer' is deprecated [-Wdeprecated-declarations] - 47 | CSocketRequest(CThreadedServer& server, SOCK sock) // NCBI_FAKE_WARNING - | ^ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/threaded_server.cpp:33: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/threaded_server.hpp:77:44: note: declared here - 77 | NCBI_DEPRECATED_CLASS NCBI_XCONNECT_EXPORT CThreadedServer - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/threaded_server.cpp:52:22: warning: 'CThreadedServer' is deprecated [-Wdeprecated-declarations] - 52 | CThreadedServer& m_Server; // NCBI_FAKE_WARNING - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/threaded_server.cpp:33: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/threaded_server.hpp:77:44: note: declared here - 77 | NCBI_DEPRECATED_CLASS NCBI_XCONNECT_EXPORT CThreadedServer - | ^~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/threaded_server.cpp -o threaded_server.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/server.cpp -o server.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/server_monitor.cpp -o server_monitor.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/connection_pool.cpp -o connection_pool.o -/bin/rm -f libxthrserv.so .libxthrserv.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libxthrserv.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC threaded_server.o server.o server_monitor.o connection_pool.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lxutil -lxconnect -lmbedtls -lmbedx509 -lmbedcrypto -lz -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxthrserv.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -/bin/ln -f libxthrserv.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libxthrserv.so -/bin/ln -f .xthrserv.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.xthrserv.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect' -cd connect/services/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xconnserv UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect/services' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect/services' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect/services' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect/services' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect/services' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/services TMPL=xconnserv -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/repIn file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/services/grid_worker_app.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/services/wn_cleanup.hpp:35, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/services/grid_worker_impl.hpp:37, @@ -17731,6 +17742,30 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/services/grid_worker_app.hpp:93:51: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 93 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ +roducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/core/split_query.c -o split_query.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/core/gencode_singleton.c -o gencode_singleton.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/core/index_ungapped.c -o index_ungapped.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/core/blast_traceback_mt_priv.c -o blast_traceback_mt_priv.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/core/blast_hspstream_mt_utils.c -o blast_hspstream_mt_utils.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/core/boost_erf.c -o boost_erf.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/alg-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/cgi/user_agent.cpp -o user_agent.o +/bin/rm -f libxcgi.so .libxcgi.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libxcgi.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC ncbicgi.o cgiapp.o cgictx.o ncbicgir.o ncbires.o ref_args.o cgi_run.o cgi_util.o cgi_serial.o cgi_session.o cgi_exception.o cgiapp_cached.o cgi_entry_reader.o user_agent.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lxutil -lxncbi -ldl -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcgi.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib +/bin/ln -f libxcgi.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libxcgi.so +/bin/ln -f .xcgi.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.xcgi.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/cgi' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/cgi' +o/blast/core/jumper.c -o jumper.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/core/hspfilter_mapper.c -o hspfilter_mapper.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/core/spliced_hits.c -o spliced_hits.o +/bin/rm -f libblast.so .libblast.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libblast.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC aa_ungapped.o blast_diagnostics.o blast_engine.o blast_extend.o blast_filter.o blast_gapalign.o blast_hits.o blast_hspstream.o blast_itree.o blast_kappa.o blast_lookup.o blast_aalookup.o blast_aascan.o blast_nalookup.o blast_nascan.o blast_message.o blast_options.o blast_psi.o na_ungapped.o blast_psi_priv.o blast_seg.o blast_seqsrc.o blast_setup.o blast_stat.o blast_traceback.o blast_util.o gapinfo.o greedy_align.o hspfilter_collector.o hspfilter_besthit.o hspfilter_culling.o link_hsps.o lookup_util.o lookup_wrap.o matrix_freq_ratios.o ncbi_std.o ncbi_math.o blast_encoding.o pattern.o phi_extend.o phi_gapalign.o phi_lookup.o blast_parameters.o blast_posit.o blast_program.o blast_query_info.o blast_tune.o blast_sw.o blast_dynarray.o split_query.o gencode_singleton.o index_ungapped.o blast_traceback_mt_priv.o blast_hspstream_mt_utils.o boost_erf.o jumper.o hspfilter_mapper.o spliced_hits.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lcomposition_adjustment -lxconnect -ltables -ldl -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib +/bin/ln -f libblast.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libblast.so +/bin/ln -f .blast.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.blast.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/core' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/core' -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/objcopy.cpp -o objcopy.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/iterator.cpp -o iterator.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/serial.cpp -o serial.o @@ -18536,13 +18571,7 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/services/grid_worker_app.hpp:93:51: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 93 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -e-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/objlist.cpp -o objlist.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/objstack.cpp -o objstack.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/objostrasn.cpp -o objostrasn.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/objistrasn.cpp -o objistrasn.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/objostrasnb.cpp -o objostrasnb.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/objistrasnb.cpp -o objistrasnb.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serIn file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/services/grid_worker_app.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/services/wn_cleanup.hpp:35, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/services/grid_worker_impl.hpp:37, @@ -18716,7 +18745,13 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/services/grid_worker_app.hpp:93:51: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 93 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:72, +e-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/objlist.cpp -o objlist.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/objstack.cpp -o objstack.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/objostrasn.cpp -o objostrasn.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/objistrasn.cpp -o objistrasn.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/objostrasnb.cpp -o objostrasnb.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/objistrasnb.cpp -o objistrasnb.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serIn file included from /usr/include/c++/10/vector:72, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, @@ -18743,24 +18778,31 @@ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_vector.h: In member function 'virtual std::string ncbi::CObjectIStreamAsnBinary::ReadOtherPointer()': +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1198 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/services/wn_main_loop.cpp -o wn_main_loop.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/services/wn_cleanup.cpp -o wn_cleanup.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/services/wn_offline_mode.cpp -o wn_offline_mode.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/services/grid_control_thread.cpp -o grid_control_thread.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/services/grid_globals.cpp -o grid_globals.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/services/grid_rw_impl.cpp -o grid_rw_impl.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducibl/usr/include/c++/10/bits/stl_vector.h: In member function 'virtual std::string ncbi::CObjectIStreamAsnBinary::ReadOtherPointer()': -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1198 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -ial/objostrxml.cpp -o objostrxml.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproduciblial/objostrxml.cpp -o objostrxml.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/objistrxml.cpp -o objistrxml.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/objostrjson.cpp -o objostrjson.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/objistrjson.cpp -o objistrjson.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/serializable.cpp -o serializable.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/serialobject.cpp -o serialobject.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/pathhook.cpp -o pathhook.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/rpcbase.cpp -o rpcbase.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOe-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/services/remote_app.cpp -o remote_app.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/services/srv_connections.cpp -o srv_connections.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/services/netservice_api.cpp -o netservice_api.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/services/netservice_params.cpp -o netservice_params.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/services/netschedule_api.cpp -o netschedule_api.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/services/netschedule_api_submitter.cpp -o netschedule_api_submitter.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/services/netschedule_api_executor.cpp -o netschedule_api_executor.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-mURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/rpcbase.cpp -o rpcbase.o /bin/rm -f libxser.so .libxser.so.stamp /usr/bin/g++ -std=gnu++14 -shared -o libxser.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC hookdata.o hookdatakey.o typeinfo.o objectinfo.o objectiter.o objectio.o typeref.o typemap.o stdtypes.o enumerated.o ptrinfo.o autoptrinfo.o continfo.o stltypes.o memberid.o memberlist.o item.o classinfob.o member.o classinfo.o variant.o choice.o choiceptr.o aliasinfo.o objistr.o objostr.o objcopy.o iterator.o serial.o delaybuf.o pack_string.o exception.o objhook.o objlist.o objstack.o objostrasn.o objistrasn.o objostrasnb.o objistrasnb.o objostrxml.o objistrxml.o objostrjson.o objistrjson.o serializable.o serialobject.o pathhook.o rpcbase.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxser.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib @@ -18768,17 +18810,17 @@ /bin/ln -f .xser.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.xser.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/serial' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/serial' -cd serial/datatool/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=datatool LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd serial/datatool/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=datatool LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/serial/datatool' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/serial/datatool' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/serial/datatool' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/serial/datatool' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/serial/datatool' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/datatool TMPL=datatool -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/datatool TMPL=datatool -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/datatool/datatool.hpp:36, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/datatool/type.cpp:49: @@ -19011,14 +19053,7 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -e-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/services/remote_app.cpp -o remote_app.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/services/srv_connections.cpp -o srv_connections.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/services/netservice_api.cpp -o netservice_api.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/services/netservice_params.cpp -o netservice_params.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/services/netschedule_api.cpp -o netschedule_api.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/services/netschedule_api_submitter.cpp -o netschedule_api_submitter.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/services/netschedule_api_executor.cpp -o netschedule_api_executor.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-mIn file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/services/grid_worker_app.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/services/wn_cleanup.hpp:35, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/services/grid_worker_impl.hpp:37, @@ -19192,20 +19227,26 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/connect/services/grid_worker_app.hpp:93:51: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 93 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/serial/datatool' +ap=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/services/netschedule_api_reader.cpp -o netschedule_api_reader.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/services/netschedule_api_admin.cpp -o netschedule_api_admin.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/services/netschedule_api_getjob.cpp -o netschedule_api_getjob.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/services/netschedule_key.cpp -o netschedule_key.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/services/netschedule_api_expt.cpp -o netschedule_api_expt.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/services/netcache_key.cpp -o netcache_key.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/serial/datatool' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/datatool/datatool.cpp -o datatool.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/datatool/type.cpp -o type.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/datatool/namespace.cpp -o namespace.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/datatool/statictype.cpp -o statictype.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/datatool/enumtype.cpp -o enumtype.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/datatool/reftype.cpp -o reftype.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=ap=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/services/netschedule_api_reader.cpp -o netschedule_api_reader.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/services/netschedule_api_admin.cpp -o netschedule_api_admin.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/services/netschedule_api_getjob.cpp -o netschedule_api_getjob.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/services/netschedule_key.cpp -o netschedule_key.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/services/netschedule_api_expt.cpp -o netschedule_api_expt.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/services/netcache_key.cpp -o netcache_key.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE /build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/datatool/unitype.cpp -o unitype.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map= -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/services/netcache_rw.cpp -o netcache_rw.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/services/netcache_params.cpp -o netcache_params.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/services/netcache_api.cpp -o netcache_api.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/services/netcache_api_admin.cpp -o netcache_api_admin.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/services/netcache_search.cpp -o netcache_search.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/services/netservice_protocol_parser.cpp -o netservice_protocol_parser.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/services/ut/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/datatool/unitype.cpp -o unitype.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/datatool/blocktype.cpp -o blocktype.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/datatool/choicetype.cpp -o choicetype.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/datatool/typestr.cpp -o typestr.o @@ -19443,13 +19484,7 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ - -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/services/netcache_rw.cpp -o netcache_rw.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/services/netcache_params.cpp -o netcache_params.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/services/netcache_api.cpp -o netcache_api.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/services/netcache_api_admin.cpp -o netcache_api_admin.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/services/netcache_search.cpp -o netcache_search.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/services/netservice_protocol_parser.cpp -o netservice_protocol_parser.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/services/utIn file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/datatool/datatool.hpp:36, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/datatool/choiceptrstr.cpp:36: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -19698,20 +19733,26 @@ /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/datatool/filecode.cpp -o filecode.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/datatool/code.cpp -o code.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/datatool/fileutil.cpp -o fileutil.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/datatool/alexer.cpp -o alexer.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/datatool/aparser.cpp -o aparser.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/datatool/parser.cpp -o parser.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/datatool/lexer.cpp -o lexer.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/datatool/exceptions.cpp -o exceptions.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/datatool/comments.cpp -o comments.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/services/netstorage_direct_nc.cpp -o netstorage_direct_nc.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/services/netstorage_direct_nc.cpp -o netstorage_direct_nc.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/services/ns_output_parser.cpp -o ns_output_parser.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/services/ns_job_serializer.cpp -o ns_job_serializer.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/services/compound_id.cpp -o compound_id.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/services/compound_id_v0.cpp -o compound_id_v0.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/connect/services/netschedule_api_wn_info.cpp -o netschedule_api_wn_info.o /bin/rm -f libxconnserv.so .libxconnserv.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libxconnserv.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC grid_worker.o ns_client_factory.o grid_worker_app.o grid_client.o grid_client_app.o wn_commit_thread.o wn_main_loop.o wn_cleanup.o wn_offline_mode.o grid_control_thread.o grid_globals.o grid_rw_impl.o remote_app.o srv_connections.oIn file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, +/usr/bin/g++ -std=gnu++14 -shared -o libxconnserv.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC grid_worker.o ns_client_factory.o grid_worker_app.o grid_client.o grid_client_app.o wn_commit_thread.o wn_main_loop.o wn_cleanup.o wn_offline_mode.o grid_control_thread.o grid_globals.o grid_rw_impl.o remote_app.o srv_connections.omp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/datatool/alexer.cpp -o alexer.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/datatool/aparser.cpp -o aparser.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/datatool/parser.cpp -o parser.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/datatool/lexer.cpp -o lexer.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/datatool/exceptions.cpp -o exceptions.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/datatool/comments.cpp -o comments.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURC netservice_api.o netservice_params.o netschedule_api.o netschedule_api_submitter.o netschedule_api_executor.o netschedule_api_reader.o netschedule_api_admin.o netschedule_api_getjob.o netschedule_key.o netschedule_api_expt.o netcache_key.o netcache_rw.o netcache_params.o netcache_api.o netcache_api_admin.o netcache_search.o netservice_protocol_parser.o util.o clparser.o json_over_uttp.o netstorage.o netstorage_rpc.o netstorageobjectloc.o netstorageobjectinfo.o netstorage_direct_nc.o ns_output_parser.o ns_job_serializer.o compound_id.o compound_id_v0.o netschedule_api_wn_info.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lxthrserv -lxconnect -lxutil -lxncbi -lmbedtls -lmbedx509 -lmbedcrypto -lz +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxconnserv.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib +/bin/ln -f libxconnserv.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libxconnserv.so +/bin/ln -f .xconnserv.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.xconnserv.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect/services' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect/services' +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/datatool/datatool.hpp:36, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/datatool/aliasstr.cpp:34: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -19827,12 +19868,6 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ - netservice_api.o netservice_params.o netschedule_api.o netschedule_api_submitter.o netschedule_api_executor.o netschedule_api_reader.o netschedule_api_admin.o netschedule_api_getjob.o netschedule_key.o netschedule_api_expt.o netcache_key.o netcache_rw.o netcache_params.o netcache_api.o netcache_api_admin.o netcache_search.o netservice_protocol_parser.o util.o clparser.o json_over_uttp.o netstorage.o netstorage_rpc.o netstorageobjectloc.o netstorageobjectinfo.o netstorage_direct_nc.o ns_output_parser.o ns_job_serializer.o compound_id.o compound_id_v0.o netschedule_api_wn_info.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lxthrserv -lxconnect -lxutil -lxncbi -lmbedtls -lmbedx509 -lmbedcrypto -lz -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxconnserv.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -/bin/ln -f libxconnserv.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libxconnserv.so -/bin/ln -f .xconnserv.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.xconnserv.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect/services' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect/services' E -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/datatool/srcutil.cpp -o srcutil.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/datatool/dtdaux.cpp -o dtdaux.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/serial/datatool/dtdlexer.cpp -o dtdlexer.o @@ -20088,25 +20123,42 @@ /bin/ln -f datatool /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/serial/datatool' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/serial/datatool' -cd objects/general/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources -cd objects/biblio/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources -cd objects/medline/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources +cd objects/general/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources +cd objects/biblio/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources +cd objects/medline/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/general' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/biblio' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +cd objects/pub/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/medline' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/pub' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +cd /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/biblio && /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/new_module.sh biblio all cd /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/general && /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/new_module.sh general all cd /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/medline && /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/new_module.sh medline all -cd /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/biblio && /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/new_module.sh biblio all -Platform not defined for Linux armv7l -- please fix me -Platform not defined for Linux armv7l -- please fix me -Platform not defined for Linux armv7l -- please fix me -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -/usr/bin/make -w -j3 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=medline MODULE_PATH=objects/medline MODULE_ASN=medline.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all +cd /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/pub && /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/new_module.sh pub all +Platform not defined for Linux aarch64 -- please fix me +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +Platform not defined for Linux aarch64 -- please fix me +Platform not defined for Linux aarch64 -- please fix me +Platform not defined for Linux aarch64 -- please fix me +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=biblio MODULE_PATH=objects/biblio MODULE_ASN=biblio.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/biblio' +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ \ + -opm /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src -m biblio.asn -M "objects/general/general.asn" -oA \ + -oc biblio -or objects/biblio -odi -od biblio.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd biblio.dump \ + +datatool: 2.20.1 +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/biblio' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/biblio' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=medline MODULE_PATH=objects/medline MODULE_ASN=medline.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/medline' /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src -m medline.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA \ @@ -20115,7 +20167,7 @@ datatool: 2.20.1 make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/medline' -/usr/bin/make -w -j3 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=general MODULE_PATH=objects/general MODULE_ASN=general.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all +/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=general MODULE_PATH=objects/general MODULE_ASN=general.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/general' /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src -m general.asn -M "" -oA \ @@ -20124,46 +20176,54 @@ datatool: 2.20.1 make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/general' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/medline' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/biblio' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/general' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/medline' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/medline' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/general' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/medline' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/general' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/general' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/medline' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/biblio' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/medline' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/biblio' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/general' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/medline' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/biblio' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/medline' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/general' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/medline' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/biblio' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/general' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/medline' -/usr/bin/make -w -j3 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=biblio MODULE_PATH=objects/biblio MODULE_ASN=biblio.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/biblio' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/general' +/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=pub MODULE_PATH=objects/pub MODULE_ASN=pub.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/pub' /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ \ - -opm /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src -m biblio.asn -M "objects/general/general.asn" -oA \ - -oc biblio -or objects/biblio -odi -od biblio.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd biblio.dump \ + -opm /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src -m pub.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA \ + -oc pub -or objects/pub -odi -od pub.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd pub.dump \ datatool: 2.20.1 -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/biblio' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/biblio' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/pub' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/pub' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. /usr/bin/make[4] (Makefile.medline.lib): Nothing to be done for `export-headers'. -/usr/bin/make[4] (Makefile.general.lib): Nothing to be done for `export-headers'. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/biblio' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/biblio' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/biblio' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/biblio' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/biblio' /usr/bin/make[4] (Makefile.biblio.lib): Nothing to be done for `export-headers'. -/usr/bin/make -w -j3 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=biblio MODULE_PATH=objects/biblio MODULE_ASN=biblio.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/pub' +/usr/bin/make[4] (Makefile.general.lib): Nothing to be done for `export-headers'. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/pub' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/pub' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/pub' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/pub' +/usr/bin/make[4] (Makefile.pub.lib): Nothing to be done for `export-headers'. +/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=biblio MODULE_PATH=objects/biblio MODULE_ASN=biblio.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/biblio' /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src -m biblio.asn -M "objects/general/general.asn" -oA \ @@ -20172,7 +20232,11 @@ datatool: 2.20.1 make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/biblio' -/usr/bin/make -w -j3 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=general MODULE_PATH=objects/general MODULE_ASN=general.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/biblio' +cd objects/seqcode/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqcode' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=general MODULE_PATH=objects/general MODULE_ASN=general.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/general' /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src -m general.asn -M "" -oA \ @@ -20181,15 +20245,25 @@ datatool: 2.20.1 make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/general' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/biblio' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/general' -cd objects/pub/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources -cd objects/seqcode/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/pub' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqcode' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -/usr/bin/make -w -j3 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=medline MODULE_PATH=objects/medline MODULE_ASN=medline.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all +cd objects/seq/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seq' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=pub MODULE_PATH=objects/pub MODULE_ASN=pub.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/pub' +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ \ + -opm /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src -m pub.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA \ + -oc pub -or objects/pub -odi -od pub.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd pub.dump \ + +datatool: 2.20.1 +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/pub' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/pub' +cd objects/seqset/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources +cd /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqcode && /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/new_module.sh seqcode all +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqset' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=medline MODULE_PATH=objects/medline MODULE_ASN=medline.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/medline' /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src -m medline.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA \ @@ -20199,26 +20273,28 @@ datatool: 2.20.1 make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/medline' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/medline' -cd objects/seq/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seq' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -cd /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/pub && /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/new_module.sh pub all -cd /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqcode && /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/new_module.sh seqcode all +cd objects/scoremat/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/scoremat' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seq' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +cd /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqset && /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/new_module.sh seqset all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +cd /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/scoremat && /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/new_module.sh scoremat all make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seq' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seq' make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seq' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seq' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/Makefile.sources builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq -w -j3 --jobserver-auth=9,10 all -Platform not defined for Linux armv7l -- please fix me -Platform not defined for Linux armv7l -- please fix me -make[6]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -/usr/bin/make -w -j3 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=seqcode MODULE_PATH=objects/seqcode MODULE_ASN=seqcode.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/Makefile.sources builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq -w -j4 --jobserver-auth=9,10 all +make[6]: warning: -j4 forced in submake: resetting jobserver mode. +Platform not defined for Linux aarch64 -- please fix me +Platform not defined for Linux aarch64 -- please fix me +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +Platform not defined for Linux aarch64 -- please fix me +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=seqcode MODULE_PATH=objects/seqcode MODULE_ASN=seqcode.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqcode' /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src -m seqcode.asn -M "" -oA \ @@ -20227,42 +20303,61 @@ datatool: 2.20.1 make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqcode' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqcode' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqcode' -/usr/bin/make -w -j3 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=pub MODULE_PATH=objects/pub MODULE_ASN=pub.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/pub' +/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=seqset MODULE_PATH=objects/seqset MODULE_ASN=seqset.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seq/seq' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/medline/medline.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqset' /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ \ - -opm /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src -m pub.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA \ - -oc pub -or objects/pub -odi -od pub.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd pub.dump \ + -opm /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src -m seqset.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn" -oA \ + -oc seqset -or objects/seqset -odi -od seqset.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd seqset.dump \ datatool: 2.20.1 -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/pub' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/pub' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqset' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqcode' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqset' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqcode' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqcode' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqset' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqcode' -Platform not defined for Linux armv7l -- please fix me -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/pub' +Platform not defined for Linux aarch64 -- please fix me +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqset' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqset' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqcode' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[7]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqcode' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/pub' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/pub' -make[7]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/pub' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/pub' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqset' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqset' +/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=scoremat MODULE_PATH=objects/scoremat MODULE_ASN=scoremat.asn MODULE_IMPORT='objects/seqset/seqset objects/general/general' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqset/seqset.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/general/general.asn' IMPFILES='objects/seqset/seqset.asn objects/general/general.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/scoremat' +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ \ + -opm /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src -m scoremat.asn -M "objects/seqset/seqset.asn objects/general/general.asn" -oA \ + -oc scoremat -or objects/scoremat -odi -od scoremat.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd scoremat.dump \ + +datatool: 2.20.1 +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/scoremat' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/scoremat' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/scoremat' /usr/bin/make[4] (Makefile.seqcode.lib): Nothing to be done for `export-headers'. -/usr/bin/make[4] (Makefile.pub.lib): Nothing to be done for `export-headers'. -Platform not defined for Linux armv7l -- please fix me -make[7]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/scoremat' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.seqset.lib): Nothing to be done for `export-headers'. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/scoremat' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/scoremat' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/scoremat' +/usr/bin/make[4] (Makefile.scoremat.lib): Nothing to be done for `export-headers'. +Platform not defined for Linux aarch64 -- please fix me +make[7]: warning: -j4 forced in submake: resetting jobserver mode. make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seq' status=0 ; \ -MAKE="/usr/bin/make -w -j3 --jobserver-auth=12,14"; \ +MAKE="/usr/bin/make -w -j4 --jobserver-auth=12,14"; \ export MAKE; \ for x in seqalign seqblock seqfeat seqloc seqres seqtable; do \ d=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/../$x ; \ @@ -20273,7 +20368,7 @@ echo "#include \"../$x/${x}___.cpp\"" > ${x}___.cpp ; \ done ; \ exit $status -/usr/bin/make -w -j3 --jobserver-auth=12,14 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=seqalign MODULE_PATH=objects/seqalign MODULE_ASN=seqalign.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/medline/medline.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src +/usr/bin/make -w -j4 --jobserver-auth=12,14 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=seqalign MODULE_PATH=objects/seqalign MODULE_ASN=seqalign.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/medline/medline.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqalign' /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src -m seqalign.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA \ @@ -20282,7 +20377,7 @@ datatool: 2.20.1 make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqalign' -/usr/bin/make -w -j3 --jobserver-auth=12,14 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=seqblock MODULE_PATH=objects/seqblock MODULE_ASN=seqblock.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/medline/medline.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src +/usr/bin/make -w -j4 --jobserver-auth=12,14 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=seqblock MODULE_PATH=objects/seqblock MODULE_ASN=seqblock.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/medline/medline.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqblock' /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src -m seqblock.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA \ @@ -20290,13 +20385,13 @@ -ocvs -pch 'ncbi_pch.hpp' -fd seqblock.dump \ datatool: 2.20.1 -make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.Platform not defined for Linux armv7l -- please fix me -make[7]: warning: -j3 forced in submake: resetting jobserver mode. -Platform not defined for Linux armv7l -- please fix me -make[7]: warning: -j3 forced in submake: resetting jobserver mode. -Platform not defined for Linux armv7l -- please fix me +make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.Platform not defined for Linux aarch64 -- please fix me +make[7]: warning: -j4 forced in submake: resetting jobserver mode. +Platform not defined for Linux aarch64 -- please fix me +make[7]: warning: -j4 forced in submake: resetting jobserver mode. +Platform not defined for Linux aarch64 -- please fix me 11.0+ds/c++/src/objects/seqblock' -/usr/bin/make -w -j3 --jobserver-auth=12,14 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=seqfeat MODULE_PATH=objects/seqfeat MODULE_ASN=seqfeat.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/pub/pub objects/seqloc/seqloc objects/seq/seq' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/medline/medline.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/pub/pub.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqloc/seqloc.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src +/usr/bin/make -w -j4 --jobserver-auth=12,14 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=seqfeat MODULE_PATH=objects/seqfeat MODULE_ASN=seqfeat.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/pub/pub objects/seqloc/seqloc objects/seq/seq' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/medline/medline.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/pub/pub.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqloc/seqloc.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqfeat' /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src -m seqfeat.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn" -oA \ @@ -20305,7 +20400,7 @@ datatool: 2.20.1 make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqfeat' -/usr/bin/make -w -j3 --jobserver-auth=12,14 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=seqloc MODULE_PATH=objects/seqloc MODULE_ASN=seqloc.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seqfeat/seqfeat' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src +/usr/bin/make -w -j4 --jobserver-auth=12,14 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=seqloc MODULE_PATH=objects/seqloc MODULE_ASN=seqloc.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seqfeat/seqfeat' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqloc' /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src -m seqloc.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn" -oA \ @@ -20314,10 +20409,10 @@ datatool: 2.20.1 make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqloc' -/usr/bin/make -w -j3 --jobserver-auth=12,14 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=seqres MODULE_PATH=objects/seqres MODULE_ASN=seqres.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blasmake[7]: warning: -j3 forced in submake: resetting jobserver mode. -Platform not defined for Linux armv7l -- please fix me -make[7]: warning: -j3 forced in submake: resetting jobserver mode. -/usr/bin/make -w -j3 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=seqcode MODULE_PATH=objects/seqcode MODULE_ASN=seqcode.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all +/usr/bin/make -w -j4 --jobserver-auth=12,14 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=seqres MODULE_PATH=objects/seqres MODULE_ASN=seqres.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blasmake[7]: warning: -j4 forced in submake: resetting jobserver mode. +Platform not defined for Linux aarch64 -- please fix me +make[7]: warning: -j4 forced in submake: resetting jobserver mode. +/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=seqcode MODULE_PATH=objects/seqcode MODULE_ASN=seqcode.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqcode' /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src -m seqcode.asn -M "" -oA \ @@ -20326,110 +20421,7 @@ datatool: 2.20.1 make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqcode' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqcode' -cd objects/seqset/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources -/usr/bin/make -w -j3 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=pub MODULE_PATH=objects/pub MODULE_ASN=pub.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/pub' -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ \ - -opm /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src -m pub.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA \ - -oc pub -or objects/pub -odi -od pub.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd pub.dump \ - -datatool: 2.20.1 -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/pub' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/pub' -cd objects/scoremat/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqset' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/scoremat' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -cd /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqset && /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/new_module.sh seqset all -cd /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/scoremat && /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/new_module.sh scoremat all -Platform not defined for Linux armv7l -- please fix me -Platform not defined for Linux armv7l -- please fix me -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -/usr/bin/make -w -j3 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=seqset MODULE_PATH=objects/seqset MODULE_ASN=seqset.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seq/seq' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/medline/medline.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqset' -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ \ - -opm /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src -m seqset.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn" -oA \ - -oc seqset -or objects/seqset -odi -od seqset.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd seqset.dump \ - -datatool: 2.20.1 -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqset' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqset' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqset' -/usr/bin/make -w -j3 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=scoremat MODULE_PATH=objects/scoremat MODULE_ASN=scoremat.asn MODULE_IMPORT='objects/seqset/seqset objects/general/general' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqset/seqset.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/general/general.asn' IMPFILES='objects/seqset/seqset.asn objects/general/general.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/scoremat' -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ \ - -opm /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src -m scoremat.asn -M "objects/seqset/seqset.asn objects/general/general.asn" -oA \ - -oc scoremat -or objects/scoremat -odi -od scoremat.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd scoremat.dump \ - -datatool: 2.20.1 -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/scoremat' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqset' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/scoremat' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqset' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqset' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqset' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/scoremat' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/scoremat' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/scoremat' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/scoremat' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -/usr/bin/make[4] (Makefile.seqset.lib): Nothing to be done for `export-headers'. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/scoremat' -/usr/bin/make[4] (Makefile.scoremat.lib): Nothing to be done for `export-headers'. -t+-2.11.0+ds/c++/src/objects/medline/medline.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src -make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqres' -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ \ - -opm /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src -m seqres.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA \ - -oc seqres -or objects/seqres -odi -od seqres.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd seqres.dump \ - -datatool: 2.20.1 -make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqres' -/usr/bin/make -w -j3 --jobserver-auth=12,14 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=seqtable MODULE_PATH=objects/seqtable MODULE_ASN=seqtable.asn MODULE_IMPORT='objects/general/general objects/seq/seq objects/seqloc/seqloc' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/seq.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src -make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqtable' -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ \ - -opm /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src -m seqtable.asn -M "objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn" -oA \ - -oc seqtable -or objects/seqtable -odi -od seqtable.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd seqtable.dump \ - -datatool: 2.20.1 -make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqtable' -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seq' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seq' -cd /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq && /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/new_module.sh seq all -Platform not defined for Linux armv7l -- please fix me -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -/usr/bin/make -w -j3 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=seq MODULE_PATH=objects/seq MODULE_ASN=seq.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seqloc/seqloc objects/seqblock/seqblock objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres objects/seqtable/seqtable' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/pub/pub.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/medline/medline.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqloc/seqloc.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqblock/seqblock.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqalign/seqalign.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqfeat/seqfeat.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqres/seqres.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqtable/seqtable.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq' -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ \ - -opm /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src -m seq.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn" -oA \ - -oc seq -or objects/seq -odi -od seq.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd seq.dump \ - -datatool: 2.20.1 -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seq' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seq' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seq' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seq' -/usr/bin/make[4] (Makefile.seq.lib): Nothing to be done for `export-headers'. -/usr/bin/make -w -j3 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=seqset MODULE_PATH=objects/seqset MODULE_ASN=seqset.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seq/seq' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/medline/medline.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all +/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=seqset MODULE_PATH=objects/seqset MODULE_ASN=seqset.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seq/seq' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/medline/medline.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqset' /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src -m seqset.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn" -oA \ @@ -20438,7 +20430,15 @@ datatool: 2.20.1 make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqset' -/usr/bin/make -w -j3 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=scoremat MODULE_PATH=objects/scoremat MODULE_ASN=scoremat.asn MODULE_IMPORT='objects/seqset/seqset objects/general/general' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqset/seqset.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/general/general.asn' IMPFILES='objects/seqset/seqset.asn objects/general/general.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqcode' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqset' +cd objects/blast/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources +cd objects/blastdb/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blast' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blastdb' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=scoremat MODULE_PATH=objects/scoremat MODULE_ASN=scoremat.asn MODULE_IMPORT='objects/seqset/seqset objects/general/general' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqset/seqset.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/general/general.asn' IMPFILES='objects/seqset/seqset.asn objects/general/general.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/scoremat' /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src -m scoremat.asn -M "objects/seqset/seqset.asn objects/general/general.asn" -oA \ @@ -20447,21 +20447,20 @@ datatool: 2.20.1 make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/scoremat' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqset' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/scoremat' -cd objects/blast/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources -cd objects/blastdb/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blast' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blastdb' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -cd /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/blast && /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/new_module.sh blast all +cd objects/genomecoll/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources cd /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/blastdb && /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/new_module.sh blastdb all -Platform not defined for Linux armv7l -- please fix me -Platform not defined for Linux armv7l -- please fix me -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -/usr/bin/make -w -j3 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=blastdb MODULE_PATH=objects/blastdb MODULE_ASN=blastdb.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all +cd /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/blast && /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/new_module.sh blast all +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/genomecoll' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +cd /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/genomecoll && /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/new_module.sh genome_collection all +Platform not defined for Linux aarch64 -- please fix me +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +Platform not defined for Linux aarch64 -- please fix me +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +Platform not defined for Linux aarch64 -- please fix me +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=blastdb MODULE_PATH=objects/blastdb MODULE_ASN=blastdb.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/blastdb' /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src -m blastdb.asn -M "objects/seqloc/seqloc.asn" -oA \ @@ -20471,16 +20470,29 @@ datatool: 2.20.1 make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/blastdb' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/blastdb' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/blastdb' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blastdb' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blastdb' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blastdb' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blastdb' /usr/bin/make[4] (Makefile.blastdb.lib): Nothing to be done for `export-headers'. -/usr/bin/make -w -j3 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=blast MODULE_PATH=objects/blast MODULE_ASN=blast.asn MODULE_IMPORT='objects/scoremat/scoremat objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqalign/seqalign' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/scoremat/scoremat.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/seq.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqset/seqset.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqloc/seqloc.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all +/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=genome_collection MODULE_PATH=objects/genomecoll MODULE_ASN=genome_collection.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqloc/seqloc.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqfeat/seqfeat.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/genomecoll' +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ \ + -opm /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src -m genome_collection.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn" -oA \ + -oc genome_collection -or objects/genomecoll -odi -od genome_collection.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd genome_collection.dump \ + +datatool: 2.20.1 +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/genomecoll' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/genomecoll' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/genomecoll' +cd /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/genomecoll && /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/new_module.sh gencoll_client all +/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=blast MODULE_PATH=objects/blast MODULE_ASN=blast.asn MODULE_IMPORT='objects/scoremat/scoremat objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqalign/seqalign' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/scoremat/scoremat.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/seq.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqset/seqset.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqloc/seqloc.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/blast' /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src -m blast.asn -M "objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn" -oA \ @@ -20490,23 +20502,46 @@ datatool: 2.20.1 make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/blast' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/blast' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/blast' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +Waiting for /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/genomecoll/make_asn.lockmake[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/blast' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blast' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blast' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blast' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blast' /usr/bin/make[4] (Makefile.blast.lib): Nothing to be done for `export-headers'. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blast' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blast' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blast' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blast' /usr/bin/make[4] (Makefile.xnetblastcli.lib): Nothing to be done for `export-headers'. -/usr/bin/make -w -j3 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=seq MODULE_PATH=objects/seq MODULE_ASN=seq.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seqloc/seqloc objects/seqblock/seqblock objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres objects/seqtable/seqtable' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/pub/pub.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/medline/medline.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqloc/seqloc.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqblock/seqblock.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqalign/seqalign.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqfeat/seqfeat.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqres/seqres.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqtable/seqtable.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all +t+-2.11.0+ds/c++/src/objects/medline/medline.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src +make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqres' +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ \ + -opm /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src -m seqres.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA \ + -oc seqres -or objects/seqres -odi -od seqres.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd seqres.dump \ + +datatool: 2.20.1 +make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqres' +/usr/bin/make -w -j4 --jobserver-auth=12,14 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=seqtable MODULE_PATH=objects/seqtable MODULE_ASN=seqtable.asn MODULE_IMPORT='objects/general/general objects/seq/seq objects/seqloc/seqloc' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/seq.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src +make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqtable' +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ \ + -opm /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src -m seqtable.asn -M "objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn" -oA \ + -oc seqtable -or objects/seqtable -odi -od seqtable.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd seqtable.dump \ + +datatool: 2.20.1 +make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqtable' +make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seq' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seq' +cd /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq && /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/new_module.sh seq all +Platform not defined for Linux aarch64 -- please fix me +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=seq MODULE_PATH=objects/seq MODULE_ASN=seq.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seqloc/seqloc objects/seqblock/seqblock objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres objects/seqtable/seqtable' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/pub/pub.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/medline/medline.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqloc/seqloc.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqblock/seqblock.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqalign/seqalign.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqfeat/seqfeat.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqres/seqres.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqtable/seqtable.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq' /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src -m seq.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn" -oA \ @@ -20515,27 +20550,17 @@ datatool: 2.20.1 make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seq' -cd objects/genomecoll/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/genomecoll' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -cd /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/genomecoll && /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/new_module.sh genome_collection all -Platform not defined for Linux armv7l -- please fix me -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -/usr/bin/make -w -j3 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=genome_collection MODULE_PATH=objects/genomecoll MODULE_ASN=genome_collection.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqloc/seqloc.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqfeat/seqfeat.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/genomecoll' -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ \ - -opm /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src -m genome_collection.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn" -oA \ - -oc genome_collection -or objects/genomecoll -odi -od genome_collection.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd genome_collection.dump \ - -datatool: 2.20.1 -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/genomecoll' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/genomecoll' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/genomecoll' -cd /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/genomecoll && /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/new_module.sh gencoll_client all -Waiting for /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/genomecoll/make_asn.lock/usr/bin/make -w -j3 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=blast MODULE_PATH=objects/blast MODULE_ASN=blast.asn MODULE_IMPORT='objects/scoremat/scoremat objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqalign/seqalign' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/scoremat/scoremat.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/seq.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqset/seqset.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqloc/seqloc.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seq' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seq' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seq' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seq' +/usr/bin/make[4] (Makefile.seq.lib): Nothing to be done for `export-headers'. +/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=blast MODULE_PATH=objects/blast MODULE_ASN=blast.asn MODULE_IMPORT='objects/scoremat/scoremat objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqalign/seqalign' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/scoremat/scoremat.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/seq.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqset/seqset.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqloc/seqloc.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/blast' /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src -m blast.asn -M "objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn" -oA \ @@ -20544,7 +20569,9 @@ datatool: 2.20.1 make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/blast' -/usr/bin/make -w -j3 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=blastdb MODULE_PATH=objects/blastdb MODULE_ASN=blastdb.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blast' +cd objects/seqedit/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources +/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=blastdb MODULE_PATH=objects/blastdb MODULE_ASN=blastdb.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/blastdb' /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src -m blastdb.asn -M "objects/seqloc/seqloc.asn" -oA \ @@ -20554,20 +20581,29 @@ datatool: 2.20.1 make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/blastdb' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blastdb' -cd objects/seqedit/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blast' -cd objects/seqsplit/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources +cd objects/seqsplit/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqedit' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqsplit' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -cd /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqsplit && /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/new_module.sh seqsplit all +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=genome_collection MODULE_PATH=objects/genomecoll MODULE_ASN=genome_collection.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqloc/seqloc.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqfeat/seqfeat.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/genomecoll' +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ \ + -opm /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src -m genome_collection.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn" -oA \ + -oc genome_collection -or objects/genomecoll -odi -od genome_collection.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd genome_collection.dump \ + +datatool: 2.20.1 +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/genomecoll' cd /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqedit && /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/new_module.sh seqedit all -Platform not defined for Linux armv7l -- please fix me -Platform not defined for Linux armv7l -- please fix me -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -/usr/bin/make -w -j3 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=seqsplit MODULE_PATH=objects/seqsplit MODULE_ASN=seqsplit.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqloc/seqloc.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqset/seqset.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/seq.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqalign/seqalign.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all +cd /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqsplit && /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/new_module.sh seqsplit all +Platform not defined for Linux aarch64 -- please fix me +Platform not defined for Linux aarch64 -- please fix me +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +. +Acquired /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/genomecoll/make_asn.lock for PID 14085 (make_asn) +/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=seqsplit MODULE_PATH=objects/seqsplit MODULE_ASN=seqsplit.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqloc/seqloc.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqset/seqset.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/seq.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqalign/seqalign.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqsplit' /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src -m seqsplit.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn" -oA \ @@ -20577,14 +20613,12 @@ datatool: 2.20.1 make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqsplit' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqsplit' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqsplit' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqsplit' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqsplit' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqsplit' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -/usr/bin/make -w -j3 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=seqedit MODULE_PATH=objects/seqedit MODULE_ASN=seqedit.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqloc/seqloc.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqset/seqset.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/seq.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqalign/seqalign.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqfeat/seqfeat.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqres/seqres.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all +/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=seqedit MODULE_PATH=objects/seqedit MODULE_ASN=seqedit.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqloc/seqloc.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqset/seqset.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/seq.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqalign/seqalign.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqfeat/seqfeat.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqres/seqres.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqedit' /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src -m seqedit.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn" -oA \ @@ -20593,32 +20627,23 @@ datatool: 2.20.1 make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqedit' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqsplit' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqsplit' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqedit' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqsplit' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqedit' /usr/bin/make[4] (Makefile.seqsplit.lib): Nothing to be done for `export-headers'. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqedit' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqedit' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqedit' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqedit' +Platform not defined for Linux aarch64 -- please fix me /usr/bin/make[4] (Makefile.seqedit.lib): Nothing to be done for `export-headers'. -/usr/bin/make -w -j3 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=genome_collection MODULE_PATH=objects/genomecoll MODULE_ASN=genome_collection.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqloc/seqloc.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqfeat/seqfeat.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/genomecoll' -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ \ - -opm /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src -m genome_collection.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn" -oA \ - -oc genome_collection -or objects/genomecoll -odi -od genome_collection.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd genome_collection.dump \ - -datatool: 2.20.1 -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/genomecoll' -. -Acquired /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/genomecoll/make_asn.lock for PID 20516 (make_asn) -Platform not defined for Linux armv7l -- please fix me -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -/usr/bin/make -w -j3 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=gencoll_client MODULE_PATH=objects/genomecoll MODULE_ASN=gencoll_client.asn MODULE_IMPORT='objects/genomecoll/genome_collection' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/genomecoll/genome_collection.asn' IMPFILES='objects/genomecoll/genome_collection.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=gencoll_client MODULE_PATH=objects/genomecoll MODULE_ASN=gencoll_client.asn MODULE_IMPORT='objects/genomecoll/genome_collection' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/genomecoll/genome_collection.asn' IMPFILES='objects/genomecoll/genome_collection.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/genomecoll' /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src -m gencoll_client.asn -M "objects/genomecoll/genome_collection.asn" -oA \ @@ -20628,59 +20653,43 @@ datatool: 2.20.1 make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/genomecoll' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/genomecoll' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/genomecoll' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/genomecoll' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/genomecoll' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/genomecoll' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/genomecoll' /usr/bin/make[4] (Makefile.genome_collection.lib): Nothing to be done for `export-headers'. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/genomecoll' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/genomecoll' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/genomecoll' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: *** No rule to make target '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/SQLITE3.enabled', needed by 'requirements'. Stop. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/genomecoll' NOTE: skipping project "gencoll_client" due to unmet requirements make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/genomecoll' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/genomecoll' -/usr/bin/make -w -j3 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=seqsplit MODULE_PATH=objects/seqsplit MODULE_ASN=seqsplit.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqloc/seqloc.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqset/seqset.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/seq.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqalign/seqalign.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqsplit' -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ \ - -opm /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src -m seqsplit.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn" -oA \ - -oc seqsplit -or objects/seqsplit -odi -od seqsplit.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd seqsplit.dump \ - -datatool: 2.20.1 -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqsplit' -/usr/bin/make -w -j3 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=seqedit MODULE_PATH=objects/seqedit MODULE_ASN=seqedit.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqloc/seqloc.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqset/seqset.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/seq.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqalign/seqalign.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqfeat/seqfeat.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqres/seqres.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqedit' +/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=seq MODULE_PATH=objects/seq MODULE_ASN=seq.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seqloc/seqloc objects/seqblock/seqblock objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres objects/seqtable/seqtable' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/pub/pub.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/medline/medline.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqloc/seqloc.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqblock/seqblock.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqalign/seqalign.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqfeat/seqfeat.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqres/seqres.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqtable/seqtable.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq' /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ \ - -opm /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src -m seqedit.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn" -oA \ - -oc seqedit -or objects/seqedit -odi -od seqedit.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd seqedit.dump \ + -opm /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src -m seq.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn" -oA \ + -oc seq -or objects/seq -odi -od seq.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd seq.dump \ datatool: 2.20.1 -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqedit' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqsplit' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqedit' -cd objects/submit/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources -cd objects/variation/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seq' +cd objects/submit/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/submit' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/variation' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. cd /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/submit && /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/new_module.sh submit all -cd /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/variation && /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/new_module.sh variation all -Platform not defined for Linux armv7l -- please fix me -Platform not defined for Linux armv7l -- please fix me -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -/usr/bin/make -w -j3 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=submit MODULE_PATH=objects/submit MODULE_ASN=submit.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/seq.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqset/seqset.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all +Platform not defined for Linux aarch64 -- please fix me +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=submit MODULE_PATH=objects/submit MODULE_ASN=submit.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/seq.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqset/seqset.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/submit' /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src -m submit.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn" -oA \ @@ -20690,35 +20699,48 @@ datatool: 2.20.1 make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/submit' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/submit' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/submit' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/submit' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/submit' -/usr/bin/make -w -j3 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=variation MODULE_PATH=objects/variation MODULE_ASN=variation.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub objects/seq/seq' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqfeat/seqfeat.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqloc/seqloc.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/pub/pub.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/variation' -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ \ - -opm /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src -m variation.asn -M "objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn" -oA \ - -oc variation -or objects/variation -odi -od variation.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd variation.dump \ - -datatool: 2.20.1 -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/variation' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/submit' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/variation' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/submit' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/variation' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/variation' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/variation' /usr/bin/make[4] (Makefile.submit.lib): Nothing to be done for `export-headers'. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/variation' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/variation' -/usr/bin/make[4] (Makefile.variation.lib): Nothing to be done for `export-headers'. -/usr/bin/make -w -j3 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=gencoll_client MODULE_PATH=objects/genomecoll MODULE_ASN=gencoll_client.asn MODULE_IMPORT='objects/genomecoll/genome_collection' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/genomecoll/genome_collection.asn' IMPFILES='objects/genomecoll/genome_collection.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all +/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=seqsplit MODULE_PATH=objects/seqsplit MODULE_ASN=seqsplit.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqloc/seqloc.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqset/seqset.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/seq.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqalign/seqalign.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqsplit' +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ \ + -opm /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src -m seqsplit.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn" -oA \ + -oc seqsplit -or objects/seqsplit -odi -od seqsplit.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd seqsplit.dump \ + +datatool: 2.20.1 +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqsplit' +/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=seqedit MODULE_PATH=objects/seqedit MODULE_ASN=seqedit.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqloc/seqloc.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqset/seqset.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/seq.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqalign/seqalign.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqfeat/seqfeat.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqres/seqres.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqedit' +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ \ + -opm /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src -m seqedit.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn" -oA \ + -oc seqedit -or objects/seqedit -odi -od seqedit.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd seqedit.dump \ + +datatool: 2.20.1 +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqedit' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqedit' +cd objects/variation/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqsplit' +cd objects/id1/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/variation' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/id1' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +cd /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/variation && /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/new_module.sh variation all +cd /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/id1 && /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/new_module.sh id1 all +Platform not defined for Linux aarch64 -- please fix me +Platform not defined for Linux aarch64 -- please fix me +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=gencoll_client MODULE_PATH=objects/genomecoll MODULE_ASN=gencoll_client.asn MODULE_IMPORT='objects/genomecoll/genome_collection' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/genomecoll/genome_collection.asn' IMPFILES='objects/genomecoll/genome_collection.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/genomecoll' /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src -m gencoll_client.asn -M "objects/genomecoll/genome_collection.asn" -oA \ @@ -20728,13 +20750,10 @@ datatool: 2.20.1 make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/genomecoll' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/genomecoll' -cd objects/id1/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/id1' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -cd /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/id1 && /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/new_module.sh id1 all -Platform not defined for Linux armv7l -- please fix me -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -/usr/bin/make -w -j3 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=id1 MODULE_PATH=objects/id1 MODULE_ASN=id1.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqloc/seqloc.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqset/seqset.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all +cd objects/id2/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/id2' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=id1 MODULE_PATH=objects/id1 MODULE_ASN=id1.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqloc/seqloc.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqset/seqset.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/id1' /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src -m id1.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn" -oA \ @@ -20744,23 +20763,71 @@ datatool: 2.20.1 make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/id1' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/id1' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/id1' +/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=variation MODULE_PATH=objects/variation MODULE_ASN=variation.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub objects/seq/seq' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqfeat/seqfeat.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqloc/seqloc.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/pub/pub.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/variation' +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ \ + -opm /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src -m variation.asn -M "objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn" -oA \ + -oc variation -or objects/variation -odi -od variation.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd variation.dump \ + +datatool: 2.20.1 +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/variation' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/id1' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +cd /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/id2 && /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/new_module.sh id2 all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/variation' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/id1' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/id1' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/id1' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/variation' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/variation' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/variation' /usr/bin/make[4] (Makefile.id1.lib): Nothing to be done for `export-headers'. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/variation' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/variation' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/id1' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/id1' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/id1' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/id1' +/usr/bin/make[4] (Makefile.variation.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.id1cli.lib): Nothing to be done for `export-headers'. -/usr/bin/make -w -j3 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=submit MODULE_PATH=objects/submit MODULE_ASN=submit.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/seq.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqset/seqset.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all +Platform not defined for Linux aarch64 -- please fix me +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=id2 MODULE_PATH=objects/id2 MODULE_ASN=id2.asn MODULE_IMPORT='objects/seqsplit/seqsplit objects/seqloc/seqloc' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqsplit/seqsplit.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/id2' +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ \ + -opm /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src -m id2.asn -M "objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn" -oA \ + -oc id2 -or objects/id2 -odi -od id2.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd id2.dump \ + +datatool: 2.20.1 +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/id2' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/id2' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/id2' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/id2' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/id2' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/id2' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/id2' +/usr/bin/make[4] (Makefile.id2.lib): Nothing to be done for `export-headers'. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/id2' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/id2' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/id2' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/id2' +/usr/bin/make[4] (Makefile.id2cli.lib): Nothing to be done for `export-headers'. +/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=submit MODULE_PATH=objects/submit MODULE_ASN=submit.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/seq.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqset/seqset.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/submit' /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src -m submit.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn" -oA \ @@ -20769,30 +20836,14 @@ datatool: 2.20.1 make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/submit' -/usr/bin/make -w -j3 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=variation MODULE_PATH=objects/variation MODULE_ASN=variation.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub objects/seq/seq' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqfeat/seqfeat.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqloc/seqloc.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/pub/pub.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/variation' -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ \ - -opm /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src -m variation.asn -M "objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn" -oA \ - -oc variation -or objects/variation -odi -od variation.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd variation.dump \ - -datatool: 2.20.1 -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/variation' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/variation' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/submit' -cd objects/id2/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources -cd objects/taxon1/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/id2' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +cd objects/taxon1/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/taxon1' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. cd /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/taxon1 && /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/new_module.sh taxon1 all -cd /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/id2 && /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/new_module.sh id2 all -Platform not defined for Linux armv7l -- please fix me -Platform not defined for Linux armv7l -- please fix me -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -/usr/bin/make -w -j3 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=taxon1 MODULE_PATH=objects/taxon1 MODULE_ASN=taxon1.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all +Platform not defined for Linux aarch64 -- please fix me +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=taxon1 MODULE_PATH=objects/taxon1 MODULE_ASN=taxon1.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/taxon1' /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src -m taxon1.asn -M "objects/seqfeat/seqfeat.asn" -oA \ @@ -20802,53 +20853,27 @@ datatool: 2.20.1 make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/taxon1' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/taxon1' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/taxon1' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/taxon1' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/taxon1' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/taxon1' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -/usr/bin/make -w -j3 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=id2 MODULE_PATH=objects/id2 MODULE_ASN=id2.asn MODULE_IMPORT='objects/seqsplit/seqsplit objects/seqloc/seqloc' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqsplit/seqsplit.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/id2' -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ \ - -opm /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src -m id2.asn -M "objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn" -oA \ - -oc id2 -or objects/id2 -odi -od id2.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd id2.dump \ - -datatool: 2.20.1 -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/id2' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/id2' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/taxon1' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/id2' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/id2' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. /usr/bin/make[4] (Makefile.taxon1.lib): Nothing to be done for `export-headers'. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/id2' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/id2' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/taxon1' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/id2' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/taxon1' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/taxon1' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: *** No rule to make target '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/SQLITE3.enabled', needed by 'requirements'. Stop. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/taxon1' NOTE: skipping project "local_taxon" due to unmet requirements make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/taxon1' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -/usr/bin/make[4] (Makefile.id2.lib): Nothing to be done for `export-headers'. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/id2' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/taxon1' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/id2' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/id2' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/id2' -/usr/bin/make[4] (Makefile.id2cli.lib): Nothing to be done for `export-headers'. -/usr/bin/make -w -j3 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=id1 MODULE_PATH=objects/id1 MODULE_ASN=id1.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqloc/seqloc.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqset/seqset.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all +/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=id1 MODULE_PATH=objects/id1 MODULE_ASN=id1.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqloc/seqloc.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqset/seqset.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/id1' /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src -m id1.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn" -oA \ @@ -20858,14 +20883,30 @@ datatool: 2.20.1 make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/id1' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/id1' -cd objects/blastxml/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources +cd objects/blastxml/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources +/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=variation MODULE_PATH=objects/variation MODULE_ASN=variation.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub objects/seq/seq' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqfeat/seqfeat.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqloc/seqloc.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/pub/pub.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/variation' +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ \ + -opm /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src -m variation.asn -M "objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn" -oA \ + -oc variation -or objects/variation -odi -od variation.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd variation.dump \ + +datatool: 2.20.1 +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/variation' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/variation' +cd objects/blastxml2/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blastxml' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blastxml2' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. cd /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/blastxml && /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/new_module.sh blastxml all -Platform not defined for Linux armv7l -- please fix me -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +cd /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/blastxml2 && /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/new_module.sh blastxml2 all +Platform not defined for Linux aarch64 -- please fix me +Platform not defined for Linux aarch64 -- please fix me +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. File blastxml.module not found. Using defaults... -/usr/bin/make -w -j3 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=blastxml MODULE_PATH=objects/blastxml MODULE_ASN=blastxml.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all +/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=blastxml MODULE_PATH=objects/blastxml MODULE_ASN=blastxml.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/blastxml' /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src -m blastxml.asn -M "" -oA \ @@ -20875,49 +20916,10 @@ datatool: 2.20.1 make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/blastxml' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/blastxml' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/blastxml' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blastxml' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blastxml' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blastxml' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blastxml' -/usr/bin/make[4] (Makefile.blastxml.lib): Nothing to be done for `export-headers'. -/usr/bin/make -w -j3 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=id2 MODULE_PATH=objects/id2 MODULE_ASN=id2.asn MODULE_IMPORT='objects/seqsplit/seqsplit objects/seqloc/seqloc' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqsplit/seqsplit.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/id2' -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ \ - -opm /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src -m id2.asn -M "objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn" -oA \ - -oc id2 -or objects/id2 -odi -od id2.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd id2.dump \ - -datatool: 2.20.1 -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/id2' -/usr/bin/make -w -j3 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=taxon1 MODULE_PATH=objects/taxon1 MODULE_ASN=taxon1.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/taxon1' -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ \ - -opm /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src -m taxon1.asn -M "objects/seqfeat/seqfeat.asn" -oA \ - -oc taxon1 -or objects/taxon1 -odi -od taxon1.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd taxon1.dump \ - -datatool: 2.20.1 -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/taxon1' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/taxon1' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/id2' -cd objects/blastxml2/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources -cd objects/entrez2/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/entrez2' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blastxml2' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -cd /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/entrez2 && /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/new_module.sh entrez2 all -cd /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/blastxml2 && /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/new_module.sh blastxml2 all -Platform not defined for Linux armv7l -- please fix me -Platform not defined for Linux armv7l -- please fix me -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: warning: -j3 forced in submake: resetting jobserver mode. File blastxml2.module not found. Using defaults... -/usr/bin/make -w -j3 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=blastxml2 MODULE_PATH=objects/blastxml2 MODULE_ASN=blastxml2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all +/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=blastxml2 MODULE_PATH=objects/blastxml2 MODULE_ASN=blastxml2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/blastxml2' /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src -m blastxml2.asn -M "" -oA \ @@ -20926,16 +20928,40 @@ datatool: 2.20.1 make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/blastxml2' +/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=id2 MODULE_PATH=objects/id2 MODULE_ASN=id2.asn MODULE_IMPORT='objects/seqsplit/seqsplit objects/seqloc/seqloc' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqsplit/seqsplit.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/id2' +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ \ + -opm /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src -m id2.asn -M "objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn" -oA \ + -oc id2 -or objects/id2 -odi -od id2.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd id2.dump \ + +datatool: 2.20.1 +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/id2' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/id2' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/blastxml2' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +cd objects/entrez2/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blastxml' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blastxml' +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/entrez2' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blastxml' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/blastxml2' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blastxml' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blastxml2' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blastxml2' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blastxml2' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.blastxml.lib): Nothing to be done for `export-headers'. +cd /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/entrez2 && /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/new_module.sh entrez2 all make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blastxml2' -/usr/bin/make -w -j3 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=entrez2 MODULE_PATH=objects/entrez2 MODULE_ASN=entrez2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all +/usr/bin/make[4] (Makefile.blastxml2.lib): Nothing to be done for `export-headers'. +Platform not defined for Linux aarch64 -- please fix me +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=entrez2 MODULE_PATH=objects/entrez2 MODULE_ASN=entrez2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/entrez2' /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src -m entrez2.asn -M "" -oA \ @@ -20945,41 +20971,39 @@ datatool: 2.20.1 make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/entrez2' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/entrez2' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -/usr/bin/make[4] (Makefile.blastxml2.lib): Nothing to be done for `export-headers'. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/entrez2' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/entrez2' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/entrez2' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/entrez2' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/entrez2' /usr/bin/make[4] (Makefile.entrez2.lib): Nothing to be done for `export-headers'. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/entrez2' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/entrez2' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/entrez2' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/entrez2' /usr/bin/make[4] (Makefile.entrez2cli.lib): Nothing to be done for `export-headers'. -File blastxml.module not found. Using defaults... -/usr/bin/make -w -j3 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=blastxml MODULE_PATH=objects/blastxml MODULE_ASN=blastxml.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/blastxml' +/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=taxon1 MODULE_PATH=objects/taxon1 MODULE_ASN=taxon1.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/taxon1' /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ \ - -opm /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src -m blastxml.asn -M "" -oA \ - -oc blastxml -or objects/blastxml -odi -od blastxml.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd blastxml.dump \ + -opm /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src -m taxon1.asn -M "objects/seqfeat/seqfeat.asn" -oA \ + -oc taxon1 -or objects/taxon1 -odi -od taxon1.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd taxon1.dump \ datatool: 2.20.1 -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/blastxml' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blastxml' -cd objects/gbseq/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/taxon1' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/taxon1' +cd objects/gbseq/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/gbseq' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. cd /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/gbseq && /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/new_module.sh gbseq all -Platform not defined for Linux armv7l -- please fix me -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -/usr/bin/make -w -j3 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=gbseq MODULE_PATH=objects/gbseq MODULE_ASN=gbseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all +Platform not defined for Linux aarch64 -- please fix me +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=gbseq MODULE_PATH=objects/gbseq MODULE_ASN=gbseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/gbseq' /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src -m gbseq.asn -M "" -oA \ @@ -20989,26 +21013,17 @@ datatool: 2.20.1 make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/gbseq' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/gbseq' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/gbseq' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/gbseq' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/gbseq' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/gbseq' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/gbseq' /usr/bin/make[4] (Makefile.gbseq.lib): Nothing to be done for `export-headers'. -/usr/bin/make -w -j3 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=entrez2 MODULE_PATH=objects/entrez2 MODULE_ASN=entrez2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/entrez2' -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ \ - -opm /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src -m entrez2.asn -M "" -oA \ - -oc entrez2 -or objects/entrez2 -odi -od entrez2.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd entrez2.dump \ - -datatool: 2.20.1 -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/entrez2' File blastxml2.module not found. Using defaults... -/usr/bin/make -w -j3 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=blastxml2 MODULE_PATH=objects/blastxml2 MODULE_ASN=blastxml2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all +/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=blastxml2 MODULE_PATH=objects/blastxml2 MODULE_ASN=blastxml2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/blastxml2' /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src -m blastxml2.asn -M "" -oA \ @@ -21017,30 +21032,31 @@ datatool: 2.20.1 make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/blastxml2' +File blastxml.module not found. Using defaults... +/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=blastxml MODULE_PATH=objects/blastxml MODULE_ASN=blastxml.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/blastxml' +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ \ + -opm /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src -m blastxml.asn -M "" -oA \ + -oc blastxml -or objects/blastxml -odi -od blastxml.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd blastxml.dump \ + +datatool: 2.20.1 +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/blastxml' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blastxml2' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/entrez2' -cd objects/medlars/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources -cd objects/pubmed/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blastxml' +cd objects/medlars/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources +cd objects/pubmed/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/medlars' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/pubmed' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. cd /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/medlars && /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/new_module.sh medlars all cd /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/pubmed && /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/new_module.sh pubmed all -Platform not defined for Linux armv7l -- please fix me -Platform not defined for Linux armv7l -- please fix me -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -/usr/bin/make -w -j3 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=medlars MODULE_PATH=objects/medlars MODULE_ASN=medlars.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/medlars' -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ \ - -opm /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src -m medlars.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA \ - -oc medlars -or objects/medlars -odi -od medlars.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd medlars.dump \ - -datatool: 2.20.1 -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/medlars' -/usr/bin/make -w -j3 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=pubmed MODULE_PATH=objects/pubmed MODULE_ASN=pubmed.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all +Platform not defined for Linux aarch64 -- please fix me +Platform not defined for Linux aarch64 -- please fix me +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=pubmed MODULE_PATH=objects/pubmed MODULE_ASN=pubmed.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/pubmed' /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src -m pubmed.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA \ @@ -21049,43 +21065,52 @@ datatool: 2.20.1 make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/pubmed' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/medlars' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/pubmed' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=entrez2 MODULE_PATH=objects/entrez2 MODULE_ASN=entrez2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/entrez2' +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ \ + -opm /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src -m entrez2.asn -M "" -oA \ + -oc entrez2 -or objects/entrez2 -odi -od entrez2.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd entrez2.dump \ + +datatool: 2.20.1 +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/entrez2' +/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=medlars MODULE_PATH=objects/medlars MODULE_ASN=medlars.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/medlars' +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ \ + -opm /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src -m medlars.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA \ + -oc medlars -or objects/medlars -odi -od medlars.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd medlars.dump \ + +datatool: 2.20.1 make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/medlars' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/entrez2' +cd objects/mla/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/medlars' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/pubmed' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/medlars' +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/mla' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/medlars' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/pubmed' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/medlars' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/pubmed' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/medlars' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/pubmed' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/medlars' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/pubmed' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/medlars' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +cd /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/mla && /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/new_module.sh mla all make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/medlars' /usr/bin/make[4] (Makefile.pubmed.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.medlars.lib): Nothing to be done for `export-headers'. -/usr/bin/make -w -j3 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=gbseq MODULE_PATH=objects/gbseq MODULE_ASN=gbseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/gbseq' -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ \ - -opm /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src -m gbseq.asn -M "" -oA \ - -oc gbseq -or objects/gbseq -odi -od gbseq.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd gbseq.dump \ - -datatool: 2.20.1 -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/gbseq' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/gbseq' -cd objects/mla/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/mla' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -cd /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/mla && /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/new_module.sh mla all -Platform not defined for Linux armv7l -- please fix me -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -/usr/bin/make -w -j3 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=mla MODULE_PATH=objects/mla MODULE_ASN=mla.asn MODULE_IMPORT='objects/biblio/biblio objects/medline/medline objects/medlars/medlars objects/pubmed/pubmed objects/pub/pub' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/medline/medline.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/medlars/medlars.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/pubmed/pubmed.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/pub/pub.asn' IMPFILES='objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all +Platform not defined for Linux aarch64 -- please fix me +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=mla MODULE_PATH=objects/mla MODULE_ASN=mla.asn MODULE_IMPORT='objects/biblio/biblio objects/medline/medline objects/medlars/medlars objects/pubmed/pubmed objects/pub/pub' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/medline/medline.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/medlars/medlars.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/pubmed/pubmed.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/pub/pub.asn' IMPFILES='objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/mla' /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src -m mla.asn -M "objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn" -oA \ @@ -21095,66 +21120,39 @@ datatool: 2.20.1 make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/mla' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/mla' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/mla' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/mla' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/mla' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/mla' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/mla' /usr/bin/make[4] (Makefile.mla.lib): Nothing to be done for `export-headers'. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/mla' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/mla' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/mla' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/mla' /usr/bin/make[4] (Makefile.mlacli.lib): Nothing to be done for `export-headers'. -/usr/bin/make -w -j3 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=pubmed MODULE_PATH=objects/pubmed MODULE_ASN=pubmed.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/pubmed' -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ \ - -opm /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src -m pubmed.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA \ - -oc pubmed -or objects/pubmed -odi -od pubmed.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd pubmed.dump \ - -datatool: 2.20.1 -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/pubmed' -/usr/bin/make -w -j3 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=medlars MODULE_PATH=objects/medlars MODULE_ASN=medlars.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/medlars' +/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=gbseq MODULE_PATH=objects/gbseq MODULE_ASN=gbseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/gbseq' /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ \ - -opm /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src -m medlars.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA \ - -oc medlars -or objects/medlars -odi -od medlars.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd medlars.dump \ + -opm /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src -m gbseq.asn -M "" -oA \ + -oc gbseq -or objects/gbseq -odi -od gbseq.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd gbseq.dump \ datatool: 2.20.1 -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/medlars' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/pubmed' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/medlars' -cd objects/taxon3/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources -cd objects/valid/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 sources +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/gbseq' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/gbseq' +cd objects/taxon3/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/taxon3' -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/valid' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -cd /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/valid && /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/new_module.sh valid all +make[4]: warning: -j4 forced in submake: resetting jobserver mode. cd /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/taxon3 && /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/new_module.sh taxon3 all -Platform not defined for Linux armv7l -- please fix me -Platform not defined for Linux armv7l -- please fix me -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -/usr/bin/make -w -j3 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=valid MODULE_PATH=objects/valid MODULE_ASN=valid.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/valid' -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ \ - -opm /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src -m valid.asn -M "" -oA \ - -oc valid -or objects/valid -odi -od valid.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd valid.dump \ - -datatool: 2.20.1 -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/valid' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/valid' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -/usr/bin/make -w -j3 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=taxon3 MODULE_PATH=objects/taxon3 MODULE_ASN=taxon3.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all +Platform not defined for Linux aarch64 -- please fix me +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=taxon3 MODULE_PATH=objects/taxon3 MODULE_ASN=taxon3.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/taxon3' /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src -m taxon3.asn -M "objects/seqfeat/seqfeat.asn" -oA \ @@ -21164,24 +21162,51 @@ datatool: 2.20.1 make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/taxon3' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/taxon3' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/valid' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/taxon3' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/valid' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/valid' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/taxon3' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/valid' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/taxon3' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/taxon3' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/valid' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/taxon3' /usr/bin/make[4] (Makefile.taxon3.lib): Nothing to be done for `export-headers'. -/usr/bin/make[4] (Makefile.valid.lib): Nothing to be done for `export-headers'. -/usr/bin/make -w -j3 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=mla MODULE_PATH=objects/mla MODULE_ASN=mla.asn MODULE_IMPORT='objects/biblio/biblio objects/medline/medline objects/medlars/medlars objects/pubmed/pubmed objects/pub/pub' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/medline/medline.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/medlars/medlars.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/pubmed/pubmed.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/pub/pub.asn' IMPFILES='objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all +/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=pubmed MODULE_PATH=objects/pubmed MODULE_ASN=pubmed.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/pubmed' +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ \ + -opm /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src -m pubmed.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA \ + -oc pubmed -or objects/pubmed -odi -od pubmed.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd pubmed.dump \ + +datatool: 2.20.1 +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/pubmed' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/pubmed' +cd objects/valid/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources +/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=medlars MODULE_PATH=objects/medlars MODULE_ASN=medlars.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/medlars' +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ \ + -opm /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src -m medlars.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA \ + -oc medlars -or objects/medlars -odi -od medlars.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd medlars.dump \ + +datatool: 2.20.1 +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/medlars' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/medlars' +cd objects/general/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=general UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/valid' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/general' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +cd /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/valid && /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/new_module.sh valid all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/general' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/general' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/general' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/general' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/general TMPL=general -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=mla MODULE_PATH=objects/mla MODULE_ASN=mla.asn MODULE_IMPORT='objects/biblio/biblio objects/medline/medline objects/medlars/medlars objects/pubmed/pubmed objects/pub/pub' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/medline/medline.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/medlars/medlars.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/pubmed/pubmed.asn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/pub/pub.asn' IMPFILES='objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/mla' /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src -m mla.asn -M "objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn" -oA \ @@ -21191,18 +21216,19 @@ datatool: 2.20.1 make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/mla' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/mla' -cd objects/general/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=general UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/general' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/general' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/general' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/general' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/general' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/general TMPL=general -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -/usr/bin/make -w -j3 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=valid MODULE_PATH=objects/valid MODULE_ASN=valid.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all +cd objects/seqcode/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=seqcode UNIX_PROJ="" sources= configurables=configurables.null +Platform not defined for Linux aarch64 -- please fix me +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqcode' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqcode' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqcode' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqcode' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqcode' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqcode TMPL=seqcode -w -j4 --jobserver-auth=7,8 all +/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=valid MODULE_PATH=objects/valid MODULE_ASN=valid.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/valid' /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src -m valid.asn -M "" -oA \ @@ -21211,8 +21237,18 @@ datatool: 2.20.1 make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/valid' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/valid' -/usr/bin/make -w -j3 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=taxon3 MODULE_PATH=objects/taxon3 MODULE_ASN=taxon3.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/valid' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/valid' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/valid' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/valid' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/valid' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/valid' +/usr/bin/make[4] (Makefile.valid.lib): Nothing to be done for `export-headers'. +/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=taxon3 MODULE_PATH=objects/taxon3 MODULE_ASN=taxon3.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/taxon3' /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src -m taxon3.asn -M "objects/seqfeat/seqfeat.asn" -oA \ @@ -21222,28 +21258,38 @@ datatool: 2.20.1 make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/taxon3' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/taxon3' -cd objects/seqcode/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=seqcode UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqcode' -cd objects/blastxml/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=blastxml UNIX_PROJ="" sources= configurables=configurables.null -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +cd objects/blastxml/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=blastxml UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blastxml' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqcode' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqcode' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqcode' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqcode' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blastxml' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blastxml' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqcode TMPL=seqcode -w -j3 --jobserver-auth=7,8 all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blastxml' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blastxml' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/blastxml TMPL=blastxml -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/blastxml TMPL=blastxml -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/Makefile.module MODULE=valid MODULE_PATH=objects/valid MODULE_ASN=valid.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/valid' +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++ \ + -opm /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src -m valid.asn -M "" -oA \ + -oc valid -or objects/valid -odi -od valid.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd valid.dump \ + +datatool: 2.20.1 +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/valid' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/valid' +cd objects/blastxml2/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=blastxml2 UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blastxml2' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blastxml2' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blastxml2' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blastxml2' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blastxml2' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/blastxml2 TMPL=blastxml2 -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /usr/include/c++/10/vector:72, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, @@ -21259,6 +21305,48 @@ /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqcode' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqcode/seqcode__.cpp -o seqcode__.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqcode/seqcode___.cpp -o seqcode___.o +/bin/rm -f libseqcode.so .libseqcode.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libseqcode.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC seqcode__.o seqcode___.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lxser -lxncbi -ldl -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqcode.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib +/bin/ln -f libseqcode.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libseqcode.so +/bin/ln -f .seqcode.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.seqcode.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqcode' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqcode' +cd objects/entrez2/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=entrez2 UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/entrez2' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/entrez2' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/entrez2' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/entrez2' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/entrez2' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/entrez2 TMPL=entrez2 -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blastxml' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/blastxml/blastxml__.cpp -o blastxml__.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/blastxml/blastxml___.cpp -o blastxml___.o +/bin/rm -f libblastxml.so .libblastxml.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libblastxml.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC blastxml__.o blastxml___.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lxser -lxncbi -ldl -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastxml.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib +/bin/ln -f libblastxml.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libblastxml.so +/bin/ln -f .blastxml.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.blastxml.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blastxml' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blastxml' +cd objects/gbseq/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=gbseq UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/gbseq' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/gbseq' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/gbseq' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/gbseq' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/gbseq' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/gbseq TMPL=gbseq -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /usr/include/c++/10/vector:72, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, @@ -21309,52 +21397,20 @@ /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqcode' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqcode/seqcode__.cpp -o seqcode__.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqcode/seqcode___.cpp -o seqcode___.o -/bin/rm -f libseqcode.so .libseqcode.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libseqcode.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC seqcode__.o seqcode___.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lxser -lxncbi -ldl -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqcode.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -/bin/ln -f libseqcode.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libseqcode.so -/bin/ln -f .seqcode.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.seqcode.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqcode' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqcode' -cd objects/blastxml2/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=blastxml2 UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blastxml2' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blastxml2' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blastxml2' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blastxml2' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blastxml2' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/blastxml2 TMPL=blastxml2 -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blastxml' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/blastxml/blastxml__.cpp -o blastxml__.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/blastxml/blastxml___.cpp -o blastxml___.o -/bin/rm -f libblastxml.so .libblastxml.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libblastxml.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC blastxml__.o blastxml___.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lxser -lxncbi -ldl -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastxml.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -/bin/ln -f libblastxml.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libblastxml.so -/bin/ln -f .blastxml.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.blastxml.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blastxml' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blastxml' -cd objects/entrez2/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=entrez2 UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/entrez2' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/entrez2' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/entrez2' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/entrez2' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/entrez2' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/entrez2 TMPL=entrez2 -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. /usr/include/c++/10/bits/vector.tcc: In function 'ncbi::CRef ncbi::objects::s_PackAsUserField(ncbi::CConstObjectInfo, const string*)': /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blastxml2' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/blastxml2/blastxml2__.cpp -o blastxml2__.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/blastxml2/blastxml2___.cpp -o blastxml2___.o +/bin/rm -f libblastxml2.so .libblastxml2.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libblastxml2.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC blastxml2__.o blastxml2___.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lxser -lxutil -lxncbi -ldl -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastxml2.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib +/bin/ln -f libblastxml2.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libblastxml2.so +/bin/ln -f .blastxml2.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.blastxml2.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blastxml2' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blastxml2' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/general' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/general/general__.cpp -o general__.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/general/general___.cpp -o general___.o @@ -21366,38 +21422,28 @@ /bin/ln -f .general.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.general.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/general' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/general' -cd objects/gbseq/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=gbseq UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/gbseq' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/gbseq' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/gbseq' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/gbseq' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/gbseq' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/gbseq TMPL=gbseq -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blastxml2' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/blastxml2/blastxml2__.cpp -o blastxml2__.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/blastxml2/blastxml2___.cpp -o blastxml2___.o -/bin/rm -f libblastxml2.so .libblastxml2.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libblastxml2.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC blastxml2__.o blastxml2___.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lxser -lxutil -lxncbi -ldl -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastxml2.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -/bin/ln -f libblastxml2.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libblastxml2.so -/bin/ln -f .blastxml2.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.blastxml2.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blastxml2' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blastxml2' -cd objects/valid/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=valid UNIX_PROJ="" sources= configurables=configurables.null +cd objects/biblio/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=biblio UNIX_PROJ="" sources= configurables=configurables.null +cd objects/valid/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=valid UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/biblio' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/valid' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/valid' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/valid' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/biblio' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/biblio' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/valid' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/valid' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/valid TMPL=valid -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/biblio' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/biblio' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/biblio TMPL=biblio -w -j4 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/valid TMPL=valid -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/entrez2' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/entrez2/entrez2__.cpp -o entrez2__.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/entrez2/entrez2___.cpp -o entrez2___.o @@ -21408,38 +21454,17 @@ /bin/ln -f .entrez2.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.entrez2.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/entrez2' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/entrez2' -cd objects/biblio/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=biblio UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/biblio' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/biblio' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/biblio' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/biblio' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/biblio' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/biblio TMPL=biblio -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/valid' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/valid/valid__.cpp -o valid__.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/valid/valid___.cpp -o valid___.o -/bin/rm -f libvalid.so .libvalid.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libvalid.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC valid__.o valid___.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lgeneral -lxser -lxregexp -lxutil -lxncbi -ldl -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvalid.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -/bin/ln -f libvalid.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libvalid.so -/bin/ln -f .valid.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.valid.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/valid' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/valid' -cd objects/entrez2/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=entrez2cli UNIX_PROJ="" sources= configurables=configurables.null +cd objects/entrez2/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=entrez2cli UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/entrez2' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/entrez2' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/entrez2' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/entrez2' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/entrez2' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/entrez2 TMPL=entrez2cli -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/entrez2 TMPL=entrez2cli -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/gbseq' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/gbseq/gbseq__.cpp -o gbseq__.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/gbseq/gbseq___.cpp -o gbseq___.o @@ -21450,6 +21475,26 @@ /bin/ln -f .gbseq.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.gbseq.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/gbseq' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/gbseq' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/entrez2' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/entrez2/entrez2_client.cpp -o entrez2_client.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/entrez2/entrez2_client_.cpp -o entrez2_client_.o +/bin/rm -f libentrez2cli.so .libentrez2cli.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libentrez2cli.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC entrez2_client.o entrez2_client_.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lentrez2 -lxconnect -lxser -lxutil -lxncbi -ldl -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrez2cli.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib +/bin/ln -f libentrez2cli.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libentrez2cli.so +/bin/ln -f .entrez2cli.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.entrez2cli.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/entrez2' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/entrez2' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/valid' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/valid/valid__.cpp -o valid__.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/valid/valid___.cpp -o valid___.o +/bin/rm -f libvalid.so .libvalid.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libvalid.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC valid__.o valid___.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lgeneral -lxser -lxregexp -lxutil -lxncbi -ldl -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvalid.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib +/bin/ln -f libvalid.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libvalid.so +/bin/ln -f .valid.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.valid.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/valid' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/valid' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/biblio' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/biblio/biblio__.cpp -o biblio__.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/biblio/biblio___.cpp -o biblio___.o @@ -21461,38 +21506,28 @@ /bin/ln -f .biblio.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.biblio.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/biblio' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/biblio' -cd objects/medline/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=medline UNIX_PROJ="" sources= configurables=configurables.null -cd objects/medlars/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=medlars UNIX_PROJ="" sources= configurables=configurables.null +cd objects/medline/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=medline UNIX_PROJ="" sources= configurables=configurables.null +cd objects/medlars/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=medlars UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/medline' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/medlars' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/medline' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/medlars' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/medline' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/medlars' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/medline' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/medlars' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/medline' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/medlars' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/medline TMPL=medline -w -j3 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/medlars TMPL=medlars -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/entrez2' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/entrez2/entrez2_client.cpp -o entrez2_client.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/entrez2/entrez2_client_.cpp -o entrez2_client_.o -/bin/rm -f libentrez2cli.so .libentrez2cli.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libentrez2cli.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC entrez2_client.o entrez2_client_.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lentrez2 -lxconnect -lxser -lxutil -lxncbi -ldl -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrez2cli.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -/bin/ln -f libentrez2cli.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libentrez2cli.so -/bin/ln -f .entrez2cli.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.entrez2cli.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/entrez2' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/entrez2' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/medlars TMPL=medlars -w -j4 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/medline TMPL=medline -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/medlars' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/medlars/medlars__.cpp -o medlars__.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/medlars/medlars___.cpp -o medlars___.o @@ -21513,28 +21548,28 @@ /bin/ln -f .medline.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.medline.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/medline' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/medline' -cd objects/pub/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=pub UNIX_PROJ="" sources= configurables=configurables.null -cd objects/pubmed/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=pubmed UNIX_PROJ="" sources= configurables=configurables.null +cd objects/pub/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=pub UNIX_PROJ="" sources= configurables=configurables.null +cd objects/pubmed/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=pubmed UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/pub' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/pubmed' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/pub' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/pubmed' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/pubmed' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/pub' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/pubmed' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/pub' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/pubmed' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/pub' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/pubmed' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/pub' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/pubmed TMPL=pubmed -w -j3 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/pub TMPL=pub -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/pubmed' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/pub TMPL=pub -w -j4 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/pubmed TMPL=pubmed -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/pubmed' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/pubmed/pubmed__.cpp -o pubmed__.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/pubmed/pubmed___.cpp -o pubmed___.o @@ -21555,28 +21590,28 @@ /bin/ln -f .pub.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.pub.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/pub' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/pub' -cd objects/seq/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=seq UNIX_PROJ="" sources= configurables=configurables.null -cd objects/mla/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=mla UNIX_PROJ="" sources= configurables=configurables.null +cd objects/seq/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=seq UNIX_PROJ="" sources= configurables=configurables.null +cd objects/mla/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=mla UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seq' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/mla' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seq' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seq' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seq' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seq' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/mla' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seq' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/mla' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seq' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/mla' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seq' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/mla' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq TMPL=seq -w -j3 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/mla TMPL=mla -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seq' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq TMPL=seq -w -j4 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/mla TMPL=mla -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/../seqalign/seqalign__.cpp:9, from seqalign__.cpp:1: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/../seqalign/Seq_align.cpp: In member function 'void ncbi::objects::CSeq_align::RemapToLoc(ncbi::objects::CSeq_align_Base::TDim, const ncbi::objects::CSeq_loc&, bool)': @@ -21607,27 +21642,6 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/../seqalign/Seq_align.cpp:1365:6: note: declared here 1365 | void CSeq_align::RemapToLoc(TDim row, | ^~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/mla' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/mla/mla__.cpp -o mla__.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/mla/mla___.cpp -o mla___.o -/bin/rm -f libmla.so .libmla.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libmla.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC mla__.o mla___.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lmedlars -lpub -lpubmed -lxser -lxutil -lxncbi -ldl -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmla.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -/bin/ln -f libmla.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libmla.so -/bin/ln -f .mla.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.mla.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/mla' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/mla' -cd objects/mla/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=mlacli UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/mla' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/mla' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/mla' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/mla' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/mla' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/mla TMPL=mlacli -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:30, from seqfeat__.cpp:1: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/../seqfeat/PCRPrimerSeq.cpp: In static member function 'static bool ncbi::objects::CPCRPrimerSeq::Fixi(std::string&)': @@ -21650,6 +21664,27 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/../seqfeat/RNA_ref.cpp:124:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'unsigned int'} [-Wsign-compare] 124 | if (idx > 0 && idx < ArraySize(sc_TrnaList)) { | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/mla' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/mla/mla__.cpp -o mla__.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/mla/mla___.cpp -o mla___.o +/bin/rm -f libmla.so .libmla.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libmla.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC mla__.o mla___.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lmedlars -lpub -lpubmed -lxser -lxutil -lxncbi -ldl -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmla.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib +/bin/ln -f libmla.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libmla.so +/bin/ln -f .mla.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.mla.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/mla' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/mla' +cd objects/mla/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=mlacli UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/mla' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/mla' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/mla' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/mla' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/mla' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/mla TMPL=mlacli -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:48, from seqfeat__.cpp:1: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/../seqfeat/SubSource.cpp: In static member function 'static void ncbi::objects::CSubSource::IsCorrectDateFormat(const string&, bool&, bool&)': @@ -21663,7 +21698,13 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/../seqfeat/SubSource.cpp:514:14: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] 514 | } catch (CException) { | ^~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/mla' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seq' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/seq__.cpp -o seq__.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include seqalign__.cpp -o seqalign__.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include seqblock__.cpp -o seqblock__.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include seqfeat__.cpp -o seqfeat__.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include seqloc__.cpp -o seqloc__.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-timemake[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/mla' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/mla/mla_client.cpp -o mla_client.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/mla/mla_client_.cpp -o mla_client_.o /bin/rm -f libmlacli.so .libmlacli.so.stamp @@ -21673,13 +21714,27 @@ /bin/ln -f .mlacli.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.mlacli.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/mla' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/mla' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seq' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/seq__.cpp -o seq__.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include seqalign__.cpp -o seqalign__.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include seqblock__.cpp -o seqblock__.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include seqfeat__.cpp -o seqfeat__.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include seqloc__.cpp -o seqloc__.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-timeIn file included from /usr/include/c++/10/map:60, +In file included from /usr/include/c++/10/vector:72, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objects/seqtable/BVector_data_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objects/seqtable/BVector_data.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/../seqtable/BVector_data.cpp:41, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/../seqtable/seqtable__.cpp:2, + from seqtable__.cpp:1: +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long int&}; _Tp = long long int; _Alloc = std::allocator]': +/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 426 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 +In file included from /usr/include/c++/10/map:60, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:45, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, @@ -21715,24 +21770,6 @@ /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:72, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, - from seqfeat__.cpp:1: -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 426 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, @@ -21797,6 +21834,24 @@ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +In file included from /usr/include/c++/10/vector:72, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objects/seqloc/Giimport_id_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objects/seqloc/Giimport_id.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/../seqloc/Giimport_id.cpp:41, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/../seqloc/seqloc__.cpp:2, + from seqloc__.cpp:1: +/usr/include/c++/10/bits/vector.tcc: In member function 'ncbi::objects::SSeq_loc_CI_RangeInfo& ncbi::objects::CSeq_loc_CI_Impl::InsertRange(size_t, ncbi::objects::CSeq_loc_Base::E_Choice)': +/usr/include/c++/10/bits/vector.tcc:356:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 356 | _M_realloc_insert(begin() + __n, std::move(__v)); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, @@ -21806,22 +21861,13 @@ from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, - from seqfeat__.cpp:1: -/usr/include/c++/10/bits/stl_vector.h: In static member function 'static std::string ncbi::objects::CSubSource::FixLatLonFormat(std::string, bool)': -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1198 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1198 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1198 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objects/seqtable/BVector_data_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objects/seqtable/BVector_data.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/../seqtable/BVector_data.cpp:41, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/../seqtable/seqtable__.cpp:2, + from seqtable__.cpp:1: +/usr/include/c++/10/bits/stl_vector.h: In member function 'void ncbi::objects::CSeqTable_multi_data::ChangeToInt8()': +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, @@ -21838,10 +21884,14 @@ from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/../seqtable/BVector_data.cpp:41, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/../seqtable/seqtable__.cpp:2, from seqtable__.cpp:1: -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long int&}; _Tp = long long int; _Alloc = std::allocator]': -/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 426 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/vector.tcc: In member function 'void ncbi::objects::CSeqTable_multi_data::ChangeToReal_scaled(double, double)': +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/vector.tcc: In member function 'void ncbi::objects::CSeqTable_multi_data::ChangeToReal()': +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, @@ -21851,17 +21901,33 @@ from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objects/seqloc/Giimport_id_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objects/seqloc/Giimport_id.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/../seqloc/Giimport_id.cpp:41, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/../seqloc/seqloc__.cpp:2, - from seqloc__.cpp:1: -/usr/include/c++/10/bits/vector.tcc: In member function 'ncbi::objects::SSeq_loc_CI_RangeInfo& ncbi::objects::CSeq_loc_CI_Impl::InsertRange(size_t, ncbi::objects::CSeq_loc_Base::E_Choice)': -/usr/include/c++/10/bits/vector.tcc:356:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 356 | _M_realloc_insert(begin() + __n, std::move(__v)); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, + from seqfeat__.cpp:1: +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 426 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/vector:67, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objects/seqtable/BVector_data_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objects/seqtable/BVector_data.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/../seqtable/BVector_data.cpp:41, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/../seqtable/seqtable__.cpp:2, + from seqtable__.cpp:1: +/usr/include/c++/10/bits/stl_vector.h: In member function 'void ncbi::objects::CSeqTable_multi_data::ChangeToInt_scaled(int, int)': +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1198 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/10/map:61, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:45, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, @@ -21915,53 +21981,22 @@ from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objects/seqtable/BVector_data_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objects/seqtable/BVector_data.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/../seqtable/BVector_data.cpp:41, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/../seqtable/seqtable__.cpp:2, - from seqtable__.cpp:1: -/usr/include/c++/10/bits/stl_vector.h: In member function 'void ncbi::objects::CSeqTable_multi_data::ChangeToInt8()': -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, + from seqfeat__.cpp:1: +/usr/include/c++/10/bits/stl_vector.h: In static member function 'static std::string ncbi::objects::CSubSource::FixLatLonFormat(std::string, bool)': +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:72, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objects/seqtable/BVector_data_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objects/seqtable/BVector_data.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/../seqtable/BVector_data.cpp:41, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/../seqtable/seqtable__.cpp:2, - from seqtable__.cpp:1: -/usr/include/c++/10/bits/vector.tcc: In member function 'void ncbi::objects::CSeqTable_multi_data::ChangeToReal_scaled(double, double)': -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/vector.tcc: In member function 'void ncbi::objects::CSeqTable_multi_data::ChangeToReal()': -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:67, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objects/seqtable/BVector_data_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objects/seqtable/BVector_data.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/../seqtable/BVector_data.cpp:41, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/../seqtable/seqtable__.cpp:2, - from seqtable__.cpp:1: -/usr/include/c++/10/bits/stl_vector.h: In member function 'void ncbi::objects::CSeqTable_multi_data::ChangeToInt_scaled(int, int)': -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1198 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1198 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include seqres__.cpp -o seqres__.o @@ -22023,6 +22058,10 @@ /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/seq_id_tree.cpp: In member function 'virtual void ncbi::objects::CSeq_id_Giim_Tree::FindMatchStr(const string&, ncbi::objects::CSeq_id_Which_Tree::TSeq_id_MatchList&) const': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/seq_id_tree.cpp:2864:12: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=] + 2864 | catch (CStringException) { + | ^~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, @@ -22117,10 +22156,6 @@ /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/seq_id_tree.cpp: In member function 'virtual void ncbi::objects::CSeq_id_Giim_Tree::FindMatchStr(const string&, ncbi::objects::CSeq_id_Which_Tree::TSeq_id_MatchList&) const': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/seq_id_tree.cpp:2864:12: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=] - 2864 | catch (CStringException) { - | ^~~~~~~~~~~~~~~~ .11.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include seqloc___.cpp -o seqloc___.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include seqres___.cpp -o seqres___.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include seqtable___.cpp -o seqtable___.o @@ -22135,7 +22170,12 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/seq_align_mapper_base.cpp:1651:16: warning: catching polymorphic type 'class ncbi::objects::CAnnotMapperException' by value [-Wcatch-value=] 1651 | catch (CAnnotMapperException) { | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/sofa_map.cpp:44:29: warning: 'CSofaMap' is deprecated [-Wdeprecated-declarations] +build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/seq_id_mapper.cpp -o seq_id_mapper.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/seq_loc_mapper_base.cpp -o seq_loc_mapper_base.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/seq_align_mapper_base.cpp -o seq_align_mapper_base.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/seqlocinfo.cpp -o seqlocinfo.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/sofa_map.cpp -o sofa_map.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/sofa_map.cpp:44:29: warning: 'CSofaMap' is deprecated [-Wdeprecated-declarations] 44 | CSofaMap::TYPEMAP CSofaMap::mMapSofaTypeToId; | ^~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/sofa_map.cpp:35: @@ -22149,12 +22189,7 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objects/seq/sofa_map.hpp:43:39: note: declared here 43 | class NCBI_DEPRECATED NCBI_SEQ_EXPORT CSofaMap | ^~~~~~~~ -build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/seq_id_mapper.cpp -o seq_id_mapper.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/seq_loc_mapper_base.cpp -o seq_loc_mapper_base.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/seq_align_mapper_base.cpp -o seq_align_mapper_base.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/seqlocinfo.cpp -o seqlocinfo.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/sofa_map.cpp -o sofa_map.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/so_map.cpp -o so_map.o +blast+-2.11.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/so_map.cpp -o so_map.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/seq_loc_from_string.cpp -o seq_loc_from_string.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seq/seq_loc_reverse_complementer.cpp -o seq_loc_reverse_complementer.o /bin/rm -f libseq.so .libseq.so.stamp @@ -22164,39 +22199,50 @@ /bin/ln -f .seq.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.seq.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seq' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seq' -cd objects/seqset/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=seqset UNIX_PROJ="" sources= configurables=configurables.null -cd objects/blastdb/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=blastdb UNIX_PROJ="" sources= configurables=configurables.null -cd objects/genomecoll/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=genome_collection UNIX_PROJ="" sources= configurables=configurables.null +cd objects/seqset/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=seqset UNIX_PROJ="" sources= configurables=configurables.null +cd objects/blastdb/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=blastdb UNIX_PROJ="" sources= configurables=configurables.null +cd objects/genomecoll/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=genome_collection UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqset' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blastdb' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +cd objects/variation/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=variation UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/genomecoll' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/variation' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blastdb' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqset' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blastdb' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqset' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blastdb' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqset' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/genomecoll' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blastdb' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqset' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blastdb' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/genomecoll' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/genomecoll' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blastdb' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqset TMPL=seqset -w -j4 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/blastdb TMPL=blastdb -w -j4 --jobserver-auth=7,8 all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/genomecoll' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/variation' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/genomecoll' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqset TMPL=seqset -w -j3 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/blastdb TMPL=blastdb -w -j3 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/genomecoll TMPL=genome_collection -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/variation' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/variation' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/variation' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/genomecoll TMPL=genome_collection -w -j4 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/variation TMPL=variation -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /usr/include/c++/10/map:60, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:45, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, @@ -22224,17 +22270,17 @@ /bin/ln -f .blastdb.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.blastdb.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blastdb' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blastdb' -cd objects/variation/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=variation UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/variation' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/variation' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/variation' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/variation' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/variation' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/variation TMPL=variation -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +cd objects/taxon1/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=taxon1 UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/taxon1' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/taxon1' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/taxon1' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/taxon1' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/taxon1' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/taxon1 TMPL=taxon1 -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqset' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqset/seqset__.cpp -o seqset__.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqset/seqset___.cpp -o seqset___.o @@ -22246,38 +22292,17 @@ /bin/ln -f .seqset.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.seqset.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqset' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqset' -cd objects/taxon1/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=taxon1 UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/taxon1' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/taxon1' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/taxon1' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/taxon1' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/taxon1' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/taxon1 TMPL=taxon1 -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/genomecoll' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/genomecoll/genome_collection__.cpp -o genome_collection__.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/genomecoll/genome_collection___.cpp -o genome_collection___.o -/bin/rm -f libgenome_collection.so .libgenome_collection.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libgenome_collection.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC genome_collection__.o genome_collection___.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lseq -lgeneral -lxser -lxncbi -ldl -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgenome_collection.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -/bin/ln -f libgenome_collection.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libgenome_collection.so -/bin/ln -f .genome_collection.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.genome_collection.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/genomecoll' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/genomecoll' -cd objects/taxon3/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=taxon3 UNIX_PROJ="" sources= configurables=configurables.null +cd objects/taxon3/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=taxon3 UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/taxon3' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/taxon3' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/taxon3' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/taxon3' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/taxon3' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/taxon3 TMPL=taxon3 -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/taxon3 TMPL=taxon3 -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/taxon1/cache.cpp: In member function 'void ncbi::objects::CDomainStorage::AddField(int, int, const string&)': /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/taxon1/cache.cpp:787:24: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare] 787 | if( m_types.size() <= field_no ) { @@ -22292,60 +22317,38 @@ /bin/ln -f .variation.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.variation.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/variation' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/variation' -cd objects/scoremat/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=scoremat UNIX_PROJ="" sources= configurables=configurables.null +cd objects/scoremat/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=scoremat UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/scoremat' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/scoremat' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/scoremat' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/scoremat' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/scoremat' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/scoremat TMPL=scoremat -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/taxon3' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/taxon3/taxon3__.cpp -o taxon3__.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/taxon3/taxon3___.cpp -o taxon3___.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/taxon3/taxon3.cpp -o taxon3.o -/bin/rm -f libtaxon3.so .libtaxon3.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libtaxon3.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC taxon3__.o taxon3___.o taxon3.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lxconnect -lseq -lxser -lxutil -lxncbi -ldl -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtaxon3.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -/bin/ln -f libtaxon3.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libtaxon3.so -/bin/ln -f .taxon3.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.taxon3.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/taxon3' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/taxon3' -cd objects/seqedit/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=seqedit UNIX_PROJ="" sources= configurables=configurables.null +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/scoremat TMPL=scoremat -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/genomecoll' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/genomecoll/genome_collection__.cpp -o genome_collection__.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/genomecoll/genome_collection___.cpp -o genome_collection___.o +/bin/rm -f libgenome_collection.so .libgenome_collection.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libgenome_collection.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC genome_collection__.o genome_collection___.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lseq -lgeneral -lxser -lxncbi -ldl -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgenome_collection.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib +/bin/ln -f libgenome_collection.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libgenome_collection.so +/bin/ln -f .genome_collection.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.genome_collection.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/genomecoll' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/genomecoll' +cd objects/seqedit/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=seqedit UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqedit' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqedit' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqedit' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqedit' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqedit' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqedit TMPL=seqedit -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/scoremat' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/scoremat/scoremat__.cpp -o scoremat__.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/scoremat/scoremat___.cpp -o scoremat___.o -/bin/rm -f libscoremat.so .libscoremat.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libscoremat.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC scoremat__.o scoremat___.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lseqset -lseq -lgeneral -lxser -lxncbi -ldl -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libscoremat.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -/bin/ln -f libscoremat.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libscoremat.so -/bin/ln -f .scoremat.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.scoremat.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/scoremat' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/scoremat' -cd objects/seqsplit/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=seqsplit UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqsplit' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqsplit' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqsplit' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqsplit' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqsplit' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqsplit TMPL=seqsplit -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqedit TMPL=seqedit -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/taxon1' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/taxon1/taxon1__.cpp -o taxon1__.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/taxon1/taxon1___.cpp -o taxon1___.o @@ -22360,38 +22363,60 @@ /bin/ln -f .taxon1.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.taxon1.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/taxon1' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/taxon1' -cd objects/submit/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=submit UNIX_PROJ="" sources= configurables=configurables.null +cd objects/seqsplit/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=seqsplit UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqsplit' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqsplit' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqsplit' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqsplit' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqsplit' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqsplit TMPL=seqsplit -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/taxon3' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/taxon3/taxon3__.cpp -o taxon3__.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/taxon3/taxon3___.cpp -o taxon3___.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/taxon3/taxon3.cpp -o taxon3.o +/bin/rm -f libtaxon3.so .libtaxon3.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libtaxon3.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC taxon3__.o taxon3___.o taxon3.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lxconnect -lseq -lxser -lxutil -lxncbi -ldl -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtaxon3.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib +/bin/ln -f libtaxon3.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libtaxon3.so +/bin/ln -f .taxon3.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.taxon3.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/taxon3' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/taxon3' +cd objects/submit/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=submit UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/submit' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/submit' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/submit' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/submit' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/submit' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/submit TMPL=submit -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/submit' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/submit/submit__.cpp -o submit__.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/submit/submit___.cpp -o submit___.o -/bin/rm -f libsubmit.so .libsubmit.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libsubmit.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC submit__.o submit___.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lseqset -lseq -lbiblio -lgeneral -lxser -lxncbi -ldl -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsubmit.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -/bin/ln -f libsubmit.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libsubmit.so -/bin/ln -f .submit.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.submit.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/submit' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/submit' -cd objects/id1/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=id1 UNIX_PROJ="" sources= configurables=configurables.null +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/scoremat' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/scoremat/scoremat__.cpp -o scoremat__.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/scoremat/scoremat___.cpp -o scoremat___.o +/bin/rm -f libscoremat.so .libscoremat.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libscoremat.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC scoremat__.o scoremat___.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lseqset -lseq -lgeneral -lxser -lxncbi -ldl -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libscoremat.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib +/bin/ln -f libscoremat.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libscoremat.so +/bin/ln -f .scoremat.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.scoremat.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/scoremat' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/scoremat' +cd objects/id1/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=id1 UNIX_PROJ="" sources= configurables=configurables.null +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/submit TMPL=submit -w -j4 --jobserver-auth=7,8 all make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/id1' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/id1' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/id1' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/id1' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/id1' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/id1 TMPL=id1 -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/id1 TMPL=id1 -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqedit' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqedit/seqedit__.cpp -o seqedit__.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqedit/seqedit___.cpp -o seqedit___.o @@ -22402,59 +22427,17 @@ /bin/ln -f .seqedit.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.seqedit.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqedit' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqedit' -cd objtools/pubseq_gateway/client/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=psg_client UNIX_PROJ="" sources= configurables=configurables.null +cd objtools/pubseq_gateway/client/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=psg_client UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/pubseq_gateway/client TMPL=psg_client -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/pubseq_gateway/client/psg_client.cpp -o psg_client.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp -o psg_client_transport.o -/bin/rm -f libpsg_client.so .libpsg_client.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libpsg_client.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC psg_client.o psg_client_transport.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lxconnserv -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpsg_client.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -/bin/ln -f libpsg_client.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libpsg_client.so -/bin/ln -f .psg_client.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.psg_client.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' -cd objects/blast/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=blast UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blast' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blast' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blast' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blast' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blast' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/blast TMPL=blast -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqsplit' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqsplit/seqsplit__.cpp -o seqsplit__.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqsplit/seqsplit___.cpp -o seqsplit___.o -/bin/rm -f libseqsplit.so .libseqsplit.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libseqsplit.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC seqsplit__.o seqsplit___.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lseqset -lseq -lxser -lxncbi -ldl -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqsplit.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -/bin/ln -f libseqsplit.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libseqsplit.so -/bin/ln -f .seqsplit.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.seqsplit.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqsplit' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqsplit' -cd objtools/readers/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xobjread UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/readers' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/readers' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/readers' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/readers' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/readers' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers TMPL=xobjread -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/pubseq_gateway/client TMPL=psg_client -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/id1' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/id1/id1__.cpp -o id1__.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/id1/id1___.cpp -o id1___.o @@ -22465,17 +22448,48 @@ /bin/ln -f .id1.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.id1.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/id1' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/id1' -cd objects/id2/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=id2 UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/id2' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/id2' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/id2' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/id2' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/id2' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/id2 TMPL=id2 -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +cd objects/blast/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=blast UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blast' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blast' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blast' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blast' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blast' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/blast TMPL=blast -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/submit' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/submit/submit__.cpp -o submit__.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/submit/submit___.cpp -o submit___.o +/bin/rm -f libsubmit.so .libsubmit.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libsubmit.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC submit__.o submit___.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lseqset -lseq -lbiblio -lgeneral -lxser -lxncbi -ldl -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsubmit.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib +/bin/ln -f libsubmit.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libsubmit.so +/bin/ln -f .submit.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.submit.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/submit' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/submit' +cd objtools/readers/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xobjread UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/readers' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/readers' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/readers' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/readers' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/readers' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers TMPL=xobjread -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/pubseq_gateway/client/psg_client.cpp -o psg_client.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp -o psg_client_transport.o +/bin/rm -f libpsg_client.so .libpsg_client.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libpsg_client.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC psg_client.o psg_client_transport.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lxconnserv +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpsg_client.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib +/bin/ln -f libpsg_client.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libpsg_client.so +/bin/ln -f .psg_client.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.psg_client.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/format_guess_ex.cpp:36: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -22596,7 +22610,39 @@ /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/read_util.cpp -o read_util.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/format_guess_ex.cpp -o format_guess_ex.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/seqid_validate.cpp -o seqid_validate.o -/usr/bin/gIn file included from /usr/include/c++/10/vector:72, +/usr/bin/gmake[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqsplit' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqsplit/seqsplit__.cpp -o seqsplit__.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/seqsplit/seqsplit___.cpp -o seqsplit___.o +/bin/rm -f libseqsplit.so .libseqsplit.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libseqsplit.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC seqsplit__.o seqsplit___.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lseqset -lseq -lxser -lxncbi -ldl -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqsplit.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib +/bin/ln -f libseqsplit.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libseqsplit.so +/bin/ln -f .seqsplit.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.seqsplit.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqsplit' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqsplit' +cd objmgr/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=objmgr UNIX_PROJ="" sources= configurables=configurables.null +cd objects/id2/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=id2 UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objmgr' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/id2' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objmgr' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objmgr' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objmgr' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/id2' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/id2' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objmgr' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/id2' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/id2' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr TMPL=objmgr -w -j4 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/id2 TMPL=id2 -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +In file included from /usr/include/c++/10/vector:72, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, @@ -22635,28 +22681,13 @@ 1700 | if (code < CODE_Last) { | ~~~~~^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/agp_util.cpp:1700:14: warning: comparison between types 'ncbi::CAgpErr::EErrCode' and 'ncbi::CAgpErrEx::' [-Wsign-compare] -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/id2' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/id2/id2__.cpp -o id2__.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/id2/id2___.cpp -o id2___.o -/bin/rm -f libid2.so .libid2.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libid2.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC id2__.o id2___.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lseqsplit -lseq -lxser -lxncbi -ldl -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -/bin/ln -f libid2.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libid2.so -/bin/ln -f .id2.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.id2.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/id2' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/id2' -cd objmgr/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=objmgr UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objmgr' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objmgr' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objmgr' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objmgr' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objmgr' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr TMPL=objmgr -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/agp_validate_reader.cpp: In member function 'virtual void ncbi::CAgpValidateReader::OnGapOrComponent()': +++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/acc_pattern.cpp -o acc_pattern.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/agp_read.cpp -o agp_read.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/agp_seq_entry.cpp -o agp_seq_entry.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/agp_util.cpp -o agp_util.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/agp_validate_reader.cpp -o agp_validate_reader.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/bed_reader.cpp -o bed_reader.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/n/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/agp_validate_reader.cpp: In member function 'virtual void ncbi::CAgpValidateReader::OnGapOrComponent()': /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/agp_validate_reader.cpp:160:20: warning: comparison of integer expressions of different signedness: 'int' and 'ncbi::TSeqPos' {aka 'unsigned int'} [-Wsign-compare] 160 | if(m_max_obj_beg < m_this_row->object_beg) m_max_obj_beg = m_this_row->object_beg; | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ @@ -22676,6 +22707,30 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/agp_validate_reader.cpp:586:28: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] 586 | catch(CException e){ | ^ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/bed_reader.cpp: In member function 'virtual bool ncbi::objects::CBedReader::xDetermineLikelyColumnCount(ncbi::objects::CLinePreBuffer&, ncbi::objects::ILineErrorListener*)': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/bed_reader.cpp:508:35: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare] + 508 | if (blockSizes.size() != blockCount) { + | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/bed_reader.cpp:529:36: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare] + 529 | if (blockStarts.size() != blockCount) { + | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objmgr' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/seq_table_setters.cpp -o seq_table_setters.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/seq_table_info.cpp -o seq_table_info.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/seq_annot_info.cpp -o seq_annot_info.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/table_field.cpp -o table_field.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/seq_map_switch.cpp -o seq_map_switch.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/snp_annot_info.cpp -o snp_annot_info.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPImake[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/id2' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/id2/id2__.cpp -o id2__.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/id2/id2___.cpp -o id2___.o +/bin/rm -f libid2.so .libid2.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libid2.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC id2__.o id2___.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lseqsplit -lseq -lxser -lxncbi -ldl -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib +/bin/ln -f libid2.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libid2.so +/bin/ln -f .id2.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.id2.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/id2' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/id2' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blast' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/blast/blast__.cpp -o blast__.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/blast/blast___.cpp -o blast___.o @@ -22687,54 +22742,31 @@ /bin/ln -f .xnetblast.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.xnetblast.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blast' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blast' -cd objects/blast/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xnetblastcli UNIX_PROJ="" sources= configurables=configurables.null +cd objects/blast/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xnetblastcli UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=blast_unit_test_util UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blast' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blast' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blast' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blast' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blast' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/blast TMPL=xnetblastcli -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/bed_reader.cpp: In member function 'virtual bool ncbi::objects::CBedReader::xDetermineLikelyColumnCount(ncbi::objects::CLinePreBuffer&, ncbi::objects::ILineErrorListener*)': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/bed_reader.cpp:508:35: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare] - 508 | if (blockSizes.size() != blockCount) { - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/bed_reader.cpp:529:36: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare] - 529 | if (blockStarts.size() != blockCount) { - | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/acc_pattern.cpp -o acc_pattern.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/agp_read.cpp -o agp_read.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/agp_seq_entry.cpp -o agp_seq_entry.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/agp_util.cpp -o agp_util.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/agp_validate_reader.cpp -o agp_validate_reader.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/bed_reader.cpp -o bed_reader.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/nmake[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blast' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/blast/blastclient.cpp -o blastclient.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/blast/blastclient_.cpp -o blastclient_.o -/bin/rm -f libxnetblastcli.so .libxnetblastcli.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libxnetblastcli.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC blastclient.o blastclient_.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lxnetblast -lxconnect -lxser -lxutil -lxncbi -ldl -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxnetblastcli.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -/bin/ln -f libxnetblastcli.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libxnetblastcli.so -/bin/ln -f .xnetblastcli.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.xnetblastcli.dep +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blast' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blast' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=blast_unit_test_util UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/blast TMPL=xnetblastcli -w -j4 --jobserver-auth=7,8 all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=blast_unit_test_util -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=blast_unit_test_util -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/test_objmgr.cpp:45: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/blast_test_util.cpp:61: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -22826,13 +22858,13 @@ 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/test_objmgr.cpp:45: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/blast_test_util.cpp:61: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/test_objmgr.cpp:45: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/blast_test_util.cpp:61: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -22850,7 +22882,7 @@ | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/blast_test_util.cpp:61: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/test_objmgr.cpp:45: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -22942,13 +22974,13 @@ 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/blast_test_util.cpp:61: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/test_objmgr.cpp:45: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/blast_test_util.cpp:61: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/test_objmgr.cpp:45: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -22964,14 +22996,7 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objmgr' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/seq_table_setters.cpp -o seq_table_setters.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/seq_table_info.cpp -o seq_table_info.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/seq_annot_info.cpp -o seq_annot_info.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/table_field.cpp -o table_field.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/seq_map_switch.cpp -o seq_map_switch.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/snp_annot_info.cpp -o snp_annot_info.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPI/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/fasta.cpp: In constructor 'ncbi::objects::CFastaReader::CFastaReader(ncbi::ILineReader&, ncbi::objects::CFastaReader::TFlags, ncbi::objects::CFastaReader::FIdCheck)': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/fasta.cpp: In constructor 'ncbi::objects::CFastaReader::CFastaReader(ncbi::ILineReader&, ncbi::objects::CFastaReader::TFlags, ncbi::objects::CFastaReader::FIdCheck)': /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/fasta.cpp:225:27: warning: 'ncbi::objects::CFastaReader::m_IDGenerator' is deprecated [-Wdeprecated-declarations] 225 | m_fIdCheck(f_idcheck) | ^ @@ -23142,6 +23167,33 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/readers/fasta.hpp:433:53: note: declared here 433 | NCBI_STD_DEPRECATED("") SGap::TLinkEvidSet m_gap_linkage_evidence; | ^~~~~~~~~~~~~~~~~~~~~~ +o-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/cigar.cpp -o cigar.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/fasta.cpp -o fasta.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/aln_formats.cpp -o aln_formats.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/alnread.cpp -o alnread.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/aln_errors.cpp -o aln_errors.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/aln_error_reporter.cpp -o aln_error_reporter.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOmake[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blast' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/blast/blastclient.cpp -o blastclient.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objects/blast/blastclient_.cpp -o blastclient_.o +/bin/rm -f libxnetblastcli.so .libxnetblastcli.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libxnetblastcli.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC blastclient.o blastclient_.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lxnetblast -lxconnect -lxser -lxutil -lxncbi -ldl -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxnetblastcli.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib +/bin/ln -f libxnetblastcli.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libxnetblastcli.so +/bin/ln -f .xnetblastcli.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.xnetblastcli.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blast' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blast' +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=seqalign_util UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=seqalign_util -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, @@ -23174,13 +23226,26 @@ /usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' 14 | BOOST_HEADER_DEPRECATED( "" ) | ^~~~~~~~~~~~~~~~~~~~~~~ -o-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/cigar.cpp -o cigar.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/fasta.cpp -o fasta.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/aln_formats.cpp -o aln_formats.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/alnread.cpp -o alnread.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/aln_errors.cpp -o aln_errors.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/aln_error_reporter.cpp -o aln_error_reporter.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SO/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/aln_formatguess.cpp: In member function 'bool ncbi::objects::CAlnFormatGuesser::xSampleIsClustal(ncbi::objects::CAlnFormatGuesser::TSample&, ncbi::objects::CPeekAheadStream&)': +In file included from /usr/include/c++/10/vector:72, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiargs.hpp:84, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbi_param.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/readers/fasta.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/fasta.cpp:37: +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const ncbi::objects::SFastaFileMap::SFastaEntry&}; _Tp = ncbi::objects::SFastaFileMap::SFastaEntry; _Alloc = std::allocator]': +/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 426 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/aln_formatguess.cpp: In member function 'bool ncbi::objects::CAlnFormatGuesser::xSampleIsClustal(ncbi::objects::CAlnFormatGuesser::TSample&, ncbi::objects::CPeekAheadStream&)': /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/aln_formatguess.cpp:137:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'unsigned int'} [-Wsign-compare] 137 | if (lineCount < sample.size()) { | ~~~~~~~~~~^~~~~~~~~~~~~~~ @@ -23202,6 +23267,18 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/aln_formatguess.cpp:295:22: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 295 | return (dataSize == (endOffset - startOffset + 1)); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/vector:72, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/neutral_seqalign.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/seqalign_set_convert.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/seqalign_set_convert.cpp:36: +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const ncbi::blast::qa::SeqAlign&}; _Tp = ncbi::blast::qa::SeqAlign; _Alloc = std::allocator]': +/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 426 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/aln_util.cpp: In function 'void ncbi::objects::AlnUtil::CheckId(const string&, const std::vector&, int, int, bool)': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/aln_util.cpp:56:28: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare] + 56 | if ((orderedIds.size() > idCount) && + | ~~~~~~~~~~~~~~~~~~^~~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/../../api /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/test_objmgr.cpp -o test_objmgr.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/../../api /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/blast_test_util.cpp -o blast_test_util.o @@ -23212,48 +23289,16 @@ /bin/ln -f .blast_unit_test_util.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.blast_unit_test_util.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=seqalign_util UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=seqalign_util -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -In file included from /usr/include/c++/10/vector:72, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiargs.hpp:84, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbi_param.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/readers/fasta.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/fasta.cpp:37: -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const ncbi::objects::SFastaFileMap::SFastaEntry&}; _Tp = ncbi::objects::SFastaFileMap::SFastaEntry; _Alloc = std::allocator]': -/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 426 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/aln_util.cpp: In function 'void ncbi::objects::AlnUtil::CheckId(const string&, const std::vector&, int, int, bool)': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/aln_util.cpp:56:28: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare] - 56 | if ((orderedIds.size() > idCount) && - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~ -In file included from /usr/include/c++/10/vector:72, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/neutral_seqalign.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/seqalign_set_convert.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/seqalign_set_convert.cpp:36: -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const ncbi::blast::qa::SeqAlign&}; _Tp = ncbi::blast::qa::SeqAlign; _Alloc = std::allocator]': -/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 426 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ +cd app/blast/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=blast_app_util UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast TMPL=blast_app_util -w -j4 --jobserver-auth=7,8 all In file included from /usr/include/c++/10/vector:67, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/neutral_seqalign.hpp:37, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/seqalign_set_convert.hpp:38, @@ -23262,6 +23307,7 @@ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/seqalign_cmp.cpp -o seqalign_cmp.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/seqalign_set_convert.cpp -o seqalign_set_convert.o @@ -23271,18 +23317,6 @@ /bin/ln -f libseqalign_util.a /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libseqalign_util.a /bin/ln -f .seqalign_util.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.seqalign_util.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd app/blast/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=blast_app_util UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast TMPL=blast_app_util -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:37, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, @@ -23415,6 +23449,8 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^ +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +cd objtools/blast/services/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=blast_services UNIX_PROJ="" sources= configurables=configurables.null In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:37, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, @@ -23436,6 +23472,16 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/services' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/services' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/services' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/services' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/services' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/services TMPL=blast_services -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/aln_reader.cpp: In member function 'void ncbi::CAlnReader::x_VerifyAlignmentInfo(const ncbi::objects::SAlignmentFile&, ncbi::CAlnReader::TReadFlags)': /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/aln_reader.cpp:409:29: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 409 | for (int i=0; i< numDeflines; ++i) { @@ -23448,7 +23494,14 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/aln_reader.cpp:507:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 507 | if (i < m_DeflineInfo.size() && !m_DeflineInfo[i].mData.empty()) { | ~~^~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:67, +C -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/annot_types_ci.cpp -o annot_types_ci.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/seq_loc_cvt.cpp -o seq_loc_cvt.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/annot_selector.cpp -o annot_selector.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/seq_descr_ci.cpp -o seq_descr_ci.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/feat_ci.cpp -o feat_ci.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/graph_ci.cpp -o graph_ci.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/annot_object.cpp -o annot_object.o +/usr/bin/g++ -std=gIn file included from /usr/include/c++/10/vector:67, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, @@ -23467,6 +23520,10 @@ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/aln_scanner_fastagap.cpp: In member function 'virtual void ncbi::objects::CAlnScannerFastaGap::xImportAlignmentData(ncbi::objects::CSequenceInfo&, ncbi::objects::CLineInput&)': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/aln_scanner_fastagap.cpp:121:41: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] + 121 | if (currentDataSize != expectedDataSize) { + | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/aln_scanner.cpp: In member function 'virtual void ncbi::objects::CAlnScanner::xVerifyAlignmentData(const ncbi::objects::CSequenceInfo&)': /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/aln_scanner.cpp:92:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'unsigned int'} [-Wsign-compare] 92 | for (auto i=0; i < mSequences.size(); ++i) { @@ -23475,45 +23532,6 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/aln_scanner.cpp:233:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 233 | if (index >= mSeqIds.size()) { | ~~~~~~^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/aln_scanner_fastagap.cpp: In member function 'virtual void ncbi::objects::CAlnScannerFastaGap::xImportAlignmentData(ncbi::objects::CSequenceInfo&, ncbi::objects::CLineInput&)': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/aln_scanner_fastagap.cpp:121:41: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] - 121 | if (currentDataSize != expectedDataSize) { - | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ -C -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/annot_types_ci.cpp -o annot_types_ci.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/seq_loc_cvt.cpp -o seq_loc_cvt.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/annot_selector.cpp -o annot_selector.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/seq_descr_ci.cpp -o seq_descr_ci.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/feat_ci.cpp -o feat_ci.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/graph_ci.cpp -o graph_ci.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/annot_object.cpp -o annot_object.o -/usr/bin/g++ -std=g/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/aln_scanner_clustal.cpp: In member function 'virtual void ncbi::objects::CAlnScannerClustal::xImportAlignmentData(ncbi::objects::CSequenceInfo&, ncbi::objects::CLineInput&)': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/aln_scanner_clustal.cpp:111:10: warning: unused variable 'blockLineLength' [-Wunused-variable] - 111 | int blockLineLength = 0; - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/aln_scanner_clustal.cpp:112:10: warning: unused variable 'blockCount' [-Wunused-variable] - 112 | int blockCount = 0; - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/aln_scanner_clustal.cpp:114:10: warning: unused variable 'seqCount' [-Wunused-variable] - 114 | int seqCount = 0; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/aln_scanner_clustal.cpp: In member function 'void ncbi::objects::CAlnScannerClustal::sProcessClustalDataLine(const std::vector >&, int, int, int, bool, int&)': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/aln_scanner_clustal.cpp:299:27: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] - 299 | if (currentLineLength != blockLineLength) { - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ -URCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/aln_formatguess.cpp -o aln_formatguess.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/aln_util.cpp -o aln_util.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/aln_reader.cpp -o aln_reader.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/aln_scanner.cpp -o aln_scanner.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/aln_scanner_fastagap.cpp -o aln_scanner_fastagap.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/aln_scanner_clustal.cpp -o aln_scanner_clustal.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/n/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/aln_scanner_phylip.cpp: In member function 'virtual void ncbi::objects::CAlnScannerPhylip::xImportAlignmentData(ncbi::objects::CSequenceInfo&, ncbi::objects::CLineInput&)': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/aln_scanner_phylip.cpp:129:27: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int' [-Wsign-compare] - 129 | if (dataLineCount < mSequenceCount) { // in first block - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/aln_scanner_phylip.cpp: In member function 'virtual void ncbi::objects::CAlnScannerPhylip::xVerifyAlignmentData(const ncbi::objects::CSequenceInfo&)': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/aln_scanner_phylip.cpp:210:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] - 210 | if (mSequenceCount != mSeqIds.size()) { - | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, @@ -23542,6 +23560,43 @@ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +URCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/aln_formatguess.cpp -o aln_formatguess.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/aln_util.cpp -o aln_util.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/aln_reader.cpp -o aln_reader.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/aln_scanner.cpp -o aln_scanner.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/aln_scanner_fastagap.cpp -o aln_scanner_fastagap.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/aln_scanner_clustal.cpp -o aln_scanner_clustal.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/n/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/aln_scanner_clustal.cpp: In member function 'virtual void ncbi::objects::CAlnScannerClustal::xImportAlignmentData(ncbi::objects::CSequenceInfo&, ncbi::objects::CLineInput&)': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/aln_scanner_clustal.cpp:111:10: warning: unused variable 'blockLineLength' [-Wunused-variable] + 111 | int blockLineLength = 0; + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/aln_scanner_clustal.cpp:112:10: warning: unused variable 'blockCount' [-Wunused-variable] + 112 | int blockCount = 0; + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/aln_scanner_clustal.cpp:114:10: warning: unused variable 'seqCount' [-Wunused-variable] + 114 | int seqCount = 0; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/aln_scanner_clustal.cpp: In member function 'void ncbi::objects::CAlnScannerClustal::sProcessClustalDataLine(const std::vector >&, int, int, int, bool, int&)': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/aln_scanner_clustal.cpp:299:27: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] + 299 | if (currentLineLength != blockLineLength) { + | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/services' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/services/blast_services.cpp -o blast_services.o +/bin/rm -f libblast_services.so .libblast_services.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libblast_services.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC blast_services.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lxnetblastcli -lxnetblast -lxser -lxconnect -lxutil -lxncbi -ldl -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_services.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib +/bin/ln -f libblast_services.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libblast_services.so +/bin/ln -f .blast_services.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.blast_services.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/services' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/services' +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/aln_scanner_phylip.cpp: In member function 'virtual void ncbi::objects::CAlnScannerPhylip::xImportAlignmentData(ncbi::objects::CSequenceInfo&, ncbi::objects::CLineInput&)': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/aln_scanner_phylip.cpp:129:27: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int' [-Wsign-compare] + 129 | if (dataLineCount < mSequenceCount) { // in first block + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/aln_scanner_phylip.cpp: In member function 'virtual void ncbi::objects::CAlnScannerPhylip::xVerifyAlignmentData(const ncbi::objects::CSequenceInfo&)': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/aln_scanner_phylip.cpp:210:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] + 210 | if (mSequenceCount != mSeqIds.size()) { + | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/aln_scanner_sequin.cpp: In member function 'virtual void ncbi::objects::CAlnScannerSequin::xImportAlignmentData(ncbi::objects::CSequenceInfo&, ncbi::objects::CLineInput&)': /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/aln_scanner_sequin.cpp:73:33: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 73 | if (lineInBlock != mSeqIds.size()) { @@ -23559,60 +23614,41 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/aln_scanner_sequin.cpp:265:42: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'unsigned int'} [-Wsign-compare] 265 | for (auto curBlock = 1; curBlock < tokens.size(); ++curBlock) { | ~~~~~~~~~^~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:72, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objmgr/object_manager.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast/blast_app_util.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast/blast_app_util.cpp:35: -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ncbi::objects::CSeq_id_Handle}; _Tp = ncbi::objects::CSeq_id_Handle; _Alloc = std::allocator]': -/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 426 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/vector.tcc: In function 'void ncbi::BlastFormatter_PreFetchSequenceData(const ncbi::blast::CSearchResultSet&, ncbi::CRef, ncbi::blast::CFormattingArgs::EOutputFormat)': -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/aln_scanner_multalign.cpp: In member function 'virtual void ncbi::objects::CAlnScannerMultAlign::xImportAlignmentData(ncbi::objects::CSequenceInfo&, ncbi::objects::CLineInput&)': +nu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/annot_object_index.cpp -o annot_object_index.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/annot_ci.cpp -o annot_ci.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/tse_info.cpp -o tse_info.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/tse_info_object.cpp -o tse_info_object.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/seq_entry_info.cpp -o seq_entry_info.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/bioseq_base_info.cpp -o bioseq_base_info.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT cbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/aln_scanner_nexus.cpp -o aln_scanner_nexus.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/aln_scanner_phylip.cpp -o aln_scanner_phylip.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/aln_scanner_sequin.cpp -o aln_scanner_sequin.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/aln_scanner_multalign.cpp -o aln_scanner_multalign.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/fasta_aln_builder.cpp -o fasta_aln_builder.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/fasta_reader_utils.cpp -o fasta_reader_utils.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/aln_scanner_multalign.cpp: In member function 'virtual void ncbi::objects::CAlnScannerMultAlign::xImportAlignmentData(ncbi::objects::CSequenceInfo&, ncbi::objects::CLineInput&)': /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/aln_scanner_multalign.cpp:125:37: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 125 | if (lineInBlock != expectedNumSequences) { | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/aln_scanner_multalign.cpp:135:48: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 135 | if (!inFirstBlock && lineInBlock == expectedNumSequences) { | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ -cbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/aln_scanner_nexus.cpp -o aln_scanner_nexus.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/aln_scanner_phylip.cpp -o aln_scanner_phylip.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/aln_scanner_sequin.cpp -o aln_scanner_sequin.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/aln_scanner_multalign.cpp -o aln_scanner_multalign.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/fasta_aln_builder.cpp -o fasta_aln_builder.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/fasta_reader_utils.cpp -o fasta_reader_utils.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs /build/reproduciblemake[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast/blast_app_util.cpp -o blast_app_util.o -/bin/rm -f libblast_app_util.a .libblast_app_util.a.stamp -ar cr libblast_app_util.a blast_app_util.o -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_app_util.a /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -/bin/ln -f libblast_app_util.a /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libblast_app_util.a -/bin/ln -f .blast_app_util.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.blast_app_util.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -cd objtools/blast/services/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=blast_services UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/services' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/services' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/services' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/services' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/services' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/services TMPL=blast_services -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +In file included from /usr/include/c++/10/algorithm:62, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistl.hpp:180, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objmgr/impl/tse_info_object.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objmgr/impl/seq_entry_info.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objmgr/impl/tse_info.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objmgr/impl/data_source.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/tse_info.cpp:35: +/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_less_iter]': +/usr/include/c++/10/bits/stl_algo.h:1819:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1819 | __unguarded_linear_insert(_RandomAccessIterator __last, + | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/algorithm:62, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistl.hpp:180, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbi_limits.hpp:61, @@ -23661,6 +23697,23 @@ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +In file included from /usr/include/c++/10/vector:72, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objmgr/object_manager.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast/blast_app_util.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast/blast_app_util.cpp:35: +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ncbi::objects::CSeq_id_Handle}; _Tp = ncbi::objects::CSeq_id_Handle; _Alloc = std::allocator]': +/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 426 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/algorithm:62, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistl.hpp:180, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbi_limits.hpp:61, @@ -23709,27 +23762,7 @@ /usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h: In function 'void ncbi::objects::{anonymous}::x_SortUnique(ncbi::objects::CTSE_Info::TSeqIds&)': -/usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1974 | std::__introsort_loop(__first, __last, - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ - 1975 | std::__lg(__last - __first) * 2, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 1976 | __comp); - | ~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1891 | std::__insertion_sort(__first, __last, __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -nu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/annot_object_index.cpp -o annot_object_index.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/annot_ci.cpp -o annot_ci.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/tse_info.cpp -o tse_info.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/tse_info_object.cpp -o tse_info_object.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/seq_entry_info.cpp -o seq_entry_info.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/bioseq_base_info.cpp -o bioseq_base_info.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/track_data.cpp:35: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) @@ -23842,10 +23875,27 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/algorithm:62, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistl.hpp:180, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:38, +/usr/include/c++/10/bits/stl_algo.h: In function 'void ncbi::objects::{anonymous}::x_SortUnique(ncbi::objects::CTSE_Info::TSeqIds&)': +/usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1974 | std::__introsort_loop(__first, __last, + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ + 1975 | std::__lg(__last - __first) * 2, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 1976 | __comp); + | ~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1891 | std::__insertion_sort(__first, __last, __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/vector:72, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbicntr.hpp:40, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiobj.hpp:39, @@ -23854,10 +23904,14 @@ from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objmgr/impl/tse_info.hpp:37, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objmgr/impl/data_source.hpp:36, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/tse_info.cpp:35: -/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_less_iter]': -/usr/include/c++/10/bits/stl_algo.h:1819:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1819 | __unguarded_linear_insert(_RandomAccessIterator __last, - | ^~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const ncbi::objects::CSeq_id_Handle&}; _Tp = ncbi::objects::CSeq_id_Handle; _Alloc = std::allocator]': +/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 426 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/vector.tcc: In function 'void ncbi::BlastFormatter_PreFetchSequenceData(const ncbi::blast::CSearchResultSet&, ncbi::CRef, ncbi::blast::CFormattingArgs::EOutputFormat)': +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/gff_reader.cpp:473:18: warning: 'CGFFReader' is deprecated [-Wdeprecated-declarations] 473 | CRef | ^~~~~~~ @@ -23865,6 +23919,21 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/readers/gff_reader.hpp:71:44: note: declared here 71 | class NCBI_DEPRECATED NCBI_XOBJREAD_EXPORT CGFFReader | ^~~~~~~~~~ +In file included from /usr/include/c++/10/algorithm:61, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistl.hpp:180, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objmgr/impl/bioseq_base_info.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objmgr/impl/bioseq_info.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/bioseq_info.cpp:35: +/usr/include/c++/10/bits/stl_algobase.h: In function '_RandomAccessIterator std::__find_if(_RandomAccessIterator, _RandomAccessIterator, _Predicate, std::random_access_iterator_tag) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Predicate = __gnu_cxx::__ops::_Iter_equals_val]': +/usr/include/c++/10/bits/stl_algobase.h:1921:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1921 | __find_if(_RandomAccessIterator __first, _RandomAccessIterator __last, + | ^~~~~~~~~ +/usr/include/c++/10/bits/stl_algobase.h:1921:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/reader_data.cpp:35: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -23978,25 +24047,6 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:72, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objmgr/impl/tse_info_object.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objmgr/impl/seq_entry_info.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objmgr/impl/tse_info.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objmgr/impl/data_source.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/tse_info.cpp:35: -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const ncbi::objects::CSeq_id_Handle&}; _Tp = ncbi::objects::CSeq_id_Handle; _Alloc = std::allocator]': -/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 426 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/map:60, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:45, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, @@ -24016,6 +24066,12 @@ /usr/include/c++/10/bits/stl_tree.h:2193:5: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 2193 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algobase.h: In member function 'bool ncbi::objects::CBioseq_Info::RemoveId(const ncbi::objects::CSeq_id_Handle&)': +/usr/include/c++/10/bits/stl_algobase.h:1974:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1974 | return __find_if(__first, __last, __pred, + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ + 1975 | std::__iterator_category(__first)); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/algorithm:62, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistl.hpp:180, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbi_limits.hpp:61, @@ -24033,6 +24089,29 @@ 1839 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +In file included from /usr/include/c++/10/vector:72, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objmgr/impl/bioseq_base_info.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objmgr/impl/bioseq_info.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/bioseq_info.cpp:35: +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const ncbi::objects::CSeq_id_Handle&}; _Tp = ncbi::objects::CSeq_id_Handle; _Alloc = std::allocator]': +/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 426 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ncbi::objects::CSeq_id_Handle}; _Tp = ncbi::objects::CSeq_id_Handle; _Alloc = std::allocator]': +/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 +/usr/include/c++/10/bits/vector.tcc: In member function 'void ncbi::objects::CBioseq_Info::x_SetObject(ncbi::objects::CBioseq_Info::TObject&)': +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/bits/stl_algo.h:61, from /usr/include/c++/10/algorithm:62, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistl.hpp:180, @@ -24050,6 +24129,38 @@ /usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ +In file included from /usr/include/c++/10/algorithm:61, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistl.hpp:180, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objmgr/impl/bioseq_base_info.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objmgr/impl/bioseq_info.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/bioseq_info.cpp:35: +/usr/include/c++/10/bits/stl_algobase.h: In member function 'bool ncbi::objects::CBioseq_Info::AddId(const ncbi::objects::CSeq_id_Handle&)': +/usr/include/c++/10/bits/stl_algobase.h:1974:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1974 | return __find_if(__first, __last, __pred, + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ + 1975 | std::__iterator_category(__first)); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/vector:67, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objmgr/impl/bioseq_base_info.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objmgr/impl/bioseq_info.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/bioseq_info.cpp:35: +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1198 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/10/algorithm:62, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistl.hpp:180, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbi_limits.hpp:61, @@ -24107,15 +24218,15 @@ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/services' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/services/blast_services.cpp -o blast_services.o -/bin/rm -f libblast_services.so .libblast_services.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libblast_services.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC blast_services.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lxnetblastcli -lxnetblast -lxser -lxconnect -lxutil -lxncbi -ldl -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_services.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -/bin/ln -f libblast_services.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libblast_services.so -/bin/ln -f .blast_services.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.blast_services.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/services' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/services' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast/blast_app_util.cpp -o blast_app_util.o +/bin/rm -f libblast_app_util.a .libblast_app_util.a.stamp +ar cr libblast_app_util.a blast_app_util.o +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_app_util.a /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib +/bin/ln -f libblast_app_util.a /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libblast_app_util.a +/bin/ln -f .blast_app_util.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.blast_app_util.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/reader_base.cpp:35: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -24229,82 +24340,6 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/algorithm:61, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistl.hpp:180, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objmgr/impl/bioseq_base_info.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objmgr/impl/bioseq_info.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/bioseq_info.cpp:35: -/usr/include/c++/10/bits/stl_algobase.h: In function '_RandomAccessIterator std::__find_if(_RandomAccessIterator, _RandomAccessIterator, _Predicate, std::random_access_iterator_tag) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Predicate = __gnu_cxx::__ops::_Iter_equals_val]': -/usr/include/c++/10/bits/stl_algobase.h:1921:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1921 | __find_if(_RandomAccessIterator __first, _RandomAccessIterator __last, - | ^~~~~~~~~ -/usr/include/c++/10/bits/stl_algobase.h:1921:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algobase.h: In member function 'bool ncbi::objects::CBioseq_Info::RemoveId(const ncbi::objects::CSeq_id_Handle&)': -/usr/include/c++/10/bits/stl_algobase.h:1974:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1974 | return __find_if(__first, __last, __pred, - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ - 1975 | std::__iterator_category(__first)); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:72, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objmgr/impl/bioseq_base_info.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objmgr/impl/bioseq_info.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/bioseq_info.cpp:35: -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const ncbi::objects::CSeq_id_Handle&}; _Tp = ncbi::objects::CSeq_id_Handle; _Alloc = std::allocator]': -/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 426 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ncbi::objects::CSeq_id_Handle}; _Tp = ncbi::objects::CSeq_id_Handle; _Alloc = std::allocator]': -/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 -/usr/include/c++/10/bits/vector.tcc: In member function 'void ncbi::objects::CBioseq_Info::x_SetObject(ncbi::objects::CBioseq_Info::TObject&)': -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/algorithm:61, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistl.hpp:180, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objmgr/impl/bioseq_base_info.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objmgr/impl/bioseq_info.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/bioseq_info.cpp:35: -/usr/include/c++/10/bits/stl_algobase.h: In member function 'bool ncbi::objects::CBioseq_Info::AddId(const ncbi::objects::CSeq_id_Handle&)': -/usr/include/c++/10/bits/stl_algobase.h:1974:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1974 | return __find_if(__first, __last, __pred, - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ - 1975 | std::__iterator_category(__first)); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:67, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objmgr/impl/bioseq_base_info.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objmgr/impl/bioseq_info.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/bioseq_info.cpp:35: -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1198 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/getfeature.cpp -o getfeature.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/gff_reader.cpp -o gff_reader.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/track_data.cpp -o track_data.o @@ -24312,7 +24347,14 @@ /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/microarray_reader.cpp -o microarray_reader.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/phrap.cpp -o phrap.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/reader_base.cpp -o reader_base.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebugIn file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/reader_base.cpp:88: +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/bioseq_set_info.cpp -o bioseq_set_info.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/bioseq_info.cpp -o bioseq_info.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/data_source.cpp -o data_source.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/priority.cpp -o priority.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/prefetch_impl.cpp -o prefetch_impl.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/prefetch_manager.cpp -o prefetch_manager.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/prefetch_manager_impl.cpp -o prefetch_manager_impl.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducibleIn file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/reader_base.cpp:88: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/readers/reader_base.hpp: In constructor 'ncbi::objects::CReaderBase::CReaderBase(ncbi::objects::CReaderBase::TReaderFlags, const string&, const string&, ncbi::objects::CReaderBase::SeqIdResolver, ncbi::objects::CReaderListener*)': /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/readers/reader_base.hpp:374:19: warning: 'ncbi::objects::CReaderBase::mSeqIdResolve' will be initialized after [-Wreorder] 374 | SeqIdResolver mSeqIdResolve; @@ -24432,6 +24474,10 @@ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/readfeat.cpp: In member function 'bool ncbi::objects::CFeatureTableReader_Imp::x_AddQualifierToCdregion(ncbi::CRef, ncbi::objects::CSeqFeatData&, ncbi::objects::CFeatureTableReader_Imp::EQual, const string&)': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/readfeat.cpp:1410:22: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=] + 1410 | } catch( CStringException ) { + | ^~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, @@ -24556,18 +24602,7 @@ /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/readfeat.cpp: In member function 'bool ncbi::objects::CFeatureTableReader_Imp::x_AddQualifierToCdregion(ncbi::CRef, ncbi::objects::CSeqFeatData&, ncbi::objects::CFeatureTableReader_Imp::EQual, const string&)': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/readfeat.cpp:1410:22: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=] - 1410 | } catch( CStringException ) { - | ^~~~~~~~~~~~~~~~ --D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/bioseq_set_info.cpp -o bioseq_set_info.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/bioseq_info.cpp -o bioseq_info.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/data_source.cpp -o data_source.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/priority.cpp -o priority.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/prefetch_impl.cpp -o prefetch_impl.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/prefetch_manager.cpp -o prefetch_manager.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/prefetch_manager_impl.cpp -o prefetch_manager_impl.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/rm_reader.cpp: In member function 'ncbi::CRef ncbi::objects::CRepeatToFeat::operator()(const ncbi::objects::IRepeatRegion&)': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/rm_reader.cpp: In member function 'ncbi::CRef ncbi::objects::CRepeatToFeat::operator()(const ncbi::objects::IRepeatRegion&)': /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/rm_reader.cpp:554:44: warning: enum constant in boolean context [-Wint-in-bool-context] 554 | if (fRemoveRedundancy && m_Library && | ^~~~~~~~~ @@ -24612,7 +24647,13 @@ | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const ncbi::objects::CRawWiggleRecord&}; _Tp = ncbi::objects::CRawWiggleRecord; _Alloc = std::allocator]': +-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/prefetch_actions.cpp -o prefetch_actions.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/scope.cpp -o scope.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/heap_scope.cpp -o heap_scope.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/scope_impl.cpp -o scope_impl.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/scope_info.cpp -o scope_info.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/tse_handle.cpp -o tse_handle.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/i/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const ncbi::objects::CRawWiggleRecord&}; _Tp = ncbi::objects::CRawWiggleRecord; _Alloc = std::allocator]': /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 In file included from /usr/include/c++/10/vector:67, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, @@ -24643,6 +24684,13 @@ | ^~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/gff3_sofa.cpp:35: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/readers/gff3_sofa.hpp:99:27: warning: 'CGff3SofaTypes' is deprecated [-Wdeprecated-declarations] + 99 | CGff3SofaTypes& SofaTypes(); + | ^ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/readers/gff3_sofa.hpp:72:44: note: declared here + 72 | class NCBI_DEPRECATED NCBI_XOBJREAD_EXPORT CGff3SofaTypes + | ^~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1945 | __introsort_loop(_RandomAccessIterator __first, @@ -24654,6 +24702,29 @@ /usr/include/c++/10/bits/stl_algo.h:1937:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1937 | std::__heap_select(__first, __middle, __last, __comp); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/gff3_sofa.cpp:53:27: warning: 'CGff3SofaTypes' is deprecated [-Wdeprecated-declarations] + 53 | CGff3SofaTypes& SofaTypes() + | ^ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/gff3_sofa.cpp:35: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/readers/gff3_sofa.hpp:72:44: note: declared here + 72 | class NCBI_DEPRECATED NCBI_XOBJREAD_EXPORT CGff3SofaTypes + | ^~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/gff3_sofa.cpp: In function 'ncbi::objects::CGff3SofaTypes& ncbi::objects::SofaTypes()': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/gff3_sofa.cpp:56:24: warning: 'CGff3SofaTypes' is deprecated [-Wdeprecated-declarations] + 56 | static CSafeStatic m_Lookup; + | ^~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/gff3_sofa.cpp:35: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/readers/gff3_sofa.hpp:72:44: note: declared here + 72 | class NCBI_DEPRECATED NCBI_XOBJREAD_EXPORT CGff3SofaTypes + | ^~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/gff3_sofa.cpp: In constructor 'ncbi::objects::CGff3SofaTypes::CGff3SofaTypes()': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/gff3_sofa.cpp:67:14: warning: 'CSofaMap' is deprecated [-Wdeprecated-declarations] + 67 | CSofaMap SofaMap; + | ^~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/gff3_sofa.cpp:38: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objects/seq/sofa_map.hpp:43:39: note: declared here + 43 | class NCBI_DEPRECATED NCBI_SEQ_EXPORT CSofaMap + | ^~~~~~~~ /usr/include/c++/10/bits/stl_algo.h: In member function 'void ncbi::objects::CWiggleReader::xPreprocessValues(ncbi::objects::SWiggleStat&)': /usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1974 | std::__introsort_loop(__first, __last, @@ -24699,49 +24770,13 @@ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/gff3_sofa.cpp:35: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/readers/gff3_sofa.hpp:99:27: warning: 'CGff3SofaTypes' is deprecated [-Wdeprecated-declarations] - 99 | CGff3SofaTypes& SofaTypes(); - | ^ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/readers/gff3_sofa.hpp:72:44: note: declared here - 72 | class NCBI_DEPRECATED NCBI_XOBJREAD_EXPORT CGff3SofaTypes - | ^~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/gff3_sofa.cpp:53:27: warning: 'CGff3SofaTypes' is deprecated [-Wdeprecated-declarations] - 53 | CGff3SofaTypes& SofaTypes() - | ^ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/gff3_sofa.cpp:35: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/readers/gff3_sofa.hpp:72:44: note: declared here - 72 | class NCBI_DEPRECATED NCBI_XOBJREAD_EXPORT CGff3SofaTypes - | ^~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/gff3_sofa.cpp: In function 'ncbi::objects::CGff3SofaTypes& ncbi::objects::SofaTypes()': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/gff3_sofa.cpp:56:24: warning: 'CGff3SofaTypes' is deprecated [-Wdeprecated-declarations] - 56 | static CSafeStatic m_Lookup; - | ^~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/gff3_sofa.cpp:35: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/readers/gff3_sofa.hpp:72:44: note: declared here - 72 | class NCBI_DEPRECATED NCBI_XOBJREAD_EXPORT CGff3SofaTypes - | ^~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/gff3_sofa.cpp: In constructor 'ncbi::objects::CGff3SofaTypes::CGff3SofaTypes()': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/gff3_sofa.cpp:67:14: warning: 'CSofaMap' is deprecated [-Wdeprecated-declarations] - 67 | CSofaMap SofaMap; - | ^~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/gff3_sofa.cpp:38: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objects/seq/sofa_map.hpp:43:39: note: declared here - 43 | class NCBI_DEPRECATED NCBI_SEQ_EXPORT CSofaMap - | ^~~~~~~~ -prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/readfeat.cpp -o readfeat.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/rm_reader.cpp -o rm_reader.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/wiggle_reader.cpp -o wiggle_reader.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/gff3_sofa.cpp -o gff3_sofa.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/gff3_reader.cpp -o gff3_reader.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/gtf_reader.cpp -o gtf_reader.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBU-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/prefetch_actions.cpp -o prefetch_actions.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/scope.cpp -o scope.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/heap_scope.cpp -o heap_scope.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/scope_impl.cpp -o scope_impl.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/scope_info.cpp -o scope_info.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/tse_handle.cpp -o tse_handle.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/iIn file included from /usr/include/c++/10/algorithm:62, +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUIn file included from /usr/include/c++/10/algorithm:62, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistl.hpp:180, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:38, @@ -24755,6 +24790,24 @@ 939 | __unique(_ForwardIterator __first, _ForwardIterator __last, | ^~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 +In file included from /usr/include/c++/10/vector:72, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objects/seqloc/Seq_id_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objects/seqloc/Seq_id.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objects/seq/seq_id_handle.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objmgr/seq_map.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/seq_map.cpp:36: +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ncbi::objects::CSeq_id_Handle}; _Tp = ncbi::objects::CSeq_id_Handle; _Alloc = std::allocator]': +/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 426 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/bits/stl_algo.h:61, from /usr/include/c++/10/algorithm:62, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistl.hpp:180, @@ -24798,6 +24851,14 @@ /usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 1891 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': +/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + 1945 | __introsort_loop(_RandomAccessIterator __first, + | ^~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + 1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, @@ -24814,11 +24875,6 @@ /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': -/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - 1945 | __introsort_loop(_RandomAccessIterator __first, - | ^~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 In file included from /usr/include/c++/10/vector:67, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, @@ -24835,13 +24891,14 @@ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - 1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_vector.h: In member function 'void ncbi::objects::CSynonymsSet::AddSynonym(const ncbi::objects::CSeq_id_Handle&)': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +/usr/include/c++/10/bits/vector.tcc: In member function 'bool ncbi::objects::CSeqMap::CanResolveRange(ncbi::objects::CScope*, const ncbi::objects::SSeqMapSelector&) const': +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, @@ -24859,10 +24916,6 @@ 184 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': -/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 - 426 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/gff2_reader.cpp: In member function 'bool ncbi::objects::CGff2Reader::xGetStartsOnPlusStrand(ncbi::TSeqPos, const std::vector >&, bool, std::vector&) const': /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/gff2_reader.cpp:817:21: warning: comparison of integer expressions of different signedness: 'int' and 'const unsigned int' [-Wsign-compare] 817 | for (auto i=0; i::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': +/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 + 426 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const ncbi::objects::CBioseq_Handle&}; _Tp = ncbi::objects::CBioseq_Handle; _Alloc = std::allocator]': /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 In file included from /usr/include/c++/10/vector:67, @@ -24956,24 +25013,6 @@ /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:72, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objects/seqloc/Seq_id_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objects/seqloc/Seq_id.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objects/seq/seq_id_handle.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objmgr/seq_map.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/seq_map.cpp:36: -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ncbi::objects::CSeq_id_Handle}; _Tp = ncbi::objects::CSeq_id_Handle; _Alloc = std::allocator]': -/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 426 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/algorithm:62, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistl.hpp:180, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbi_limits.hpp:61, @@ -25014,11 +25053,14 @@ /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/vector.tcc: In member function 'bool ncbi::objects::CSeqMap::CanResolveRange(ncbi::objects::CScope*, const ncbi::objects::SSeqMapSelector&) const': -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -G -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/gff_base_columns.cpp -o gff_base_columns.o +nclude /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/seq_map.cpp -o seq_map.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/seq_map_ci.cpp -o seq_map_ci.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/seq_entry_ci.cpp -o seq_entry_ci.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/seq_annot_ci.cpp -o seq_annot_ci.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/seq_table_ci.cpp -o seq_table_ci.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/seq_entry_handle.cpp -o seq_entry_handle.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/bioseq_set_handle.cpp -o bioseq_set_handle.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -G -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/gff_base_columns.cpp -o gff_base_columns.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/gff2_data.cpp -o gff2_data.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/gff2_reader.cpp -o gff2_reader.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/gvf_reader.cpp -o gvf_reader.o @@ -25034,43 +25076,6 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/psl_data.cpp:156:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 156 | if (mBlockCount != mBlockStartsT.size()) { | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ -nclude /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/seq_map.cpp -o seq_map.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/seq_map_ci.cpp -o seq_map_ci.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/seq_entry_ci.cpp -o seq_entry_ci.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/seq_annot_ci.cpp -o seq_annot_ci.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/seq_table_ci.cpp -o seq_table_ci.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/seq_entry_handle.cpp -o seq_entry_handle.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/bioseq_set_handle.cpp -o bioseq_set_handle.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/source_mod_parser.cpp: In function 'bool ncbi::objects::{anonymous}::x_FindBrackets(const ncbi::CTempString&, size_t&, size_t&, size_t&)': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/source_mod_parser.cpp:298:14: warning: unused variable 'found' [-Wunused-variable] - 298 | bool found = false; - | ^~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/source_mod_parser.cpp: In function 'void ncbi::objects::s_GetPrimerInfo(const ncbi::objects::CSourceModParser::SMod*, const ncbi::objects::CSourceModParser::SMod*, std::vector, std::__cxx11::basic_string > >&)': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/source_mod_parser.cpp:879:20: warning: comparison of integer expressions of different signedness: 'int' and 'const unsigned int' [-Wsign-compare] - 879 | for (int i=0; i&)': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/source_mod_parser.cpp:915:25: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] - 915 | for (auto i=0; i, std::__cxx11::basic_string > >&)': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/source_mod_parser.cpp:879:20: warning: comparison of integer expressions of different signedness: 'int' and 'const unsigned int' [-Wsign-compare] + 879 | for (int i=0; i&)': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/source_mod_parser.cpp:915:25: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] + 915 | for (auto i=0; i*, std::vector > >' changed in GCC 7.1 1891 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +-Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/readers/line_error.cpp -o line_error.o +/bin/rm -f libxobjread.so .libxobjread.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libxobjread.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC reader_message.o reader_listener.o reader_message_handler.o read_util.o format_guess_ex.o seqid_validate.o acc_pattern.o agp_read.o agp_seq_entry.o agp_util.o agp_validate_reader.o bed_reader.o cigar.o fasta.o aln_formats.o alnread.o aln_errors.o aln_error_reporter.o aln_formatguess.o aln_util.o aln_reader.o aln_scanner.o aln_scanner_fastagap.o aln_scanner_clustal.o aln_scanner_nexus.o aln_scanner_phylip.o aln_scanner_sequin.o aln_scanner_multalign.o fasta_aln_builder.o fasta_reader_utils.o getfeature.o gff_reader.o track_data.o reader_data.o microarray_reader.o phrap.o reader_base.o readfeat.o rm_reader.o wiggle_reader.o gff3_sofa.o gff3_reader.o gtf_reader.o gff_base_columns.o gff2_data.o gff2_reader.o gvf_reader.o vcf_reader.o psl_reader.o psl_data.o best_feat_finder.o source_mod_parser.o fasta_exception.o agp_converter.o ucscregion_reader.o struct_cmt_reader.o mod_reader.o mod_error.o descr_mod_apply.o feature_mod_apply.o mod_to_enum.o message_listener.o line_error.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lsubmit -lseqset -lseq -lseqcode -lsequtil -lgeneral -lxutil -lxlogging -lpub -lxser -lxncbi -ldl -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjread.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib +/bin/ln -f libxobjread.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libxobjread.so +/bin/ln -f .xobjread.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.xobjread.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/readers' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/readers' In file included from /usr/include/c++/10/algorithm:62, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistl.hpp:180, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbi_limits.hpp:61, @@ -25692,19 +25727,16 @@ from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objects/seqloc/Seq_id_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objects/seqloc/Seq_id.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objects/seq/seq_id_handle.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objmgr/impl/seq_id_sort.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/seq_id_sort.cpp:35: -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ncbi::objects::CSortableSeq_id::SIdPart}; _Tp = ncbi::objects::CSortableSeq_id::SIdPart; _Alloc = std::allocator]': -/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objmgr/impl/split_parser.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/split_parser.cpp:32: +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair >}; _Tp = std::pair >; _Alloc = std::allocator > >]': +/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector > >::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ncbi::objects::CSortableSeq_id::SIdPart}; _Tp = ncbi::objects::CSortableSeq_id::SIdPart; _Alloc = std::allocator]': -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair >}; _Tp = std::pair >; _Alloc = std::allocator > >]': +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >*, std::vector > > >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, @@ -25715,16 +25747,19 @@ from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objmgr/impl/split_parser.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/split_parser.cpp:32: -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair >}; _Tp = std::pair >; _Alloc = std::allocator > >]': -/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector > >::iterator' changed in GCC 7.1 + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objects/seqloc/Seq_id_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objects/seqloc/Seq_id.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objects/seq/seq_id_handle.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objmgr/impl/seq_id_sort.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/seq_id_sort.cpp:35: +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ncbi::objects::CSortableSeq_id::SIdPart}; _Tp = ncbi::objects::CSortableSeq_id::SIdPart; _Alloc = std::allocator]': +/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair >}; _Tp = std::pair >; _Alloc = std::allocator > >]': -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >*, std::vector > > >' changed in GCC 7.1 +/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ncbi::objects::CSortableSeq_id::SIdPart}; _Tp = ncbi::objects::CSortableSeq_id::SIdPart; _Alloc = std::allocator]': +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ =/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/edits_db_saver.cpp -o edits_db_saver.o @@ -25739,39 +25774,74 @@ /bin/ln -f .xobjmgr.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.xobjmgr.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objmgr' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objmgr' -cd objtools/blast/seqdb_reader/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=seqdb UNIX_PROJ="" sources= configurables=configurables.null -cd objmgr/util/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=util UNIX_PROJ="" sources= configurables=configurables.null -cd algo/dustmask/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xalgodustmask UNIX_PROJ="" sources= configurables=configurables.null +cd objtools/blast/seqdb_reader/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=seqdb UNIX_PROJ="" sources= configurables=configurables.null +cd objmgr/util/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=util UNIX_PROJ="" sources= configurables=configurables.null +cd algo/dustmask/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xalgodustmask UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objmgr/util' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +cd objtools/data_loaders/genbank/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=ncbi_xreader UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/dustmask' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objmgr/util' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/dustmask' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objmgr/util' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objmgr/util' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/dustmask' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objmgr/util' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objmgr/util' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/dustmask' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objmgr/util' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/dustmask' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader TMPL=seqdb -w -j3 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util TMPL=util -w -j3 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/dustmask TMPL=xalgodustmask -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/dustmask' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/dustmask' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader TMPL=seqdb -w -j4 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util TMPL=util -w -j4 --jobserver-auth=7,8 all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/dustmask TMPL=xalgodustmask -w -j4 --jobserver-auth=7,8 all +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xreader -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp: In member function 'char* ncbi::CSeqDBAtlas::Alloc(size_t, ncbi::CSeqDBLockHold&, bool)': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp:359:16: warning: catching polymorphic type 'class std::bad_alloc' by value [-Wcatch-value=] + 359 | catch(std::bad_alloc) { + | ^~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp: At global scope: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp:160:13: warning: 'void ncbi::s_SeqDB_FileNotFound(const string&)' defined but not used [-Wunused-function] + 160 | static void s_SeqDB_FileNotFound(const string & fname) + | ^~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/map:60, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbithr_conf.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimtx.hpp:62, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:46, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp:35: +/usr/include/c++/10/bits/stl_tree.h: In member function 'std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string; _Val = std::pair, std::pair >; _KeyOfValue = std::_Select1st, std::pair > >; _Compare = std::less >; _Alloc = std::allocator, std::pair > >]': +/usr/include/c++/10/bits/stl_tree.h:2193:5: note: parameter passing for argument of type 'std::_Rb_tree, std::pair, std::pair >, std::_Select1st, std::pair > >, std::less >, std::allocator, std::pair > > >::const_iterator' changed in GCC 7.1 + 2193 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/weight.cpp: In function 'void ncbi::objects::GetProteinWeights(const ncbi::objects::CBioseq_Handle&, ncbi::objects::TWeights&)': /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/weight.cpp:363:18: warning: catching polymorphic type 'class ncbi::objects::CObjmgrUtilException' by value [-Wcatch-value=] 363 | } catch (CObjmgrUtilException) { @@ -25800,17 +25870,25 @@ /bin/ln -f .xalgodustmask.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.xalgodustmask.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/dustmask' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/dustmask' -cd objtools/data_loaders/genbank/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=ncbi_xreader UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xreader -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +cd algo/segmask/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xalgosegmask UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/segmask' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/segmask' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/segmask' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/segmask' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/segmask' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/segmask TMPL=xalgosegmask -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/indexer.cpp: In function 'int ncbi::objects::SkipMixedContent(const char*)': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/indexer.cpp:3576:23: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] + 3576 | for (int i = 0; i < sizeof (mixedTags); i++) { + | ~~^~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/indexer.cpp: In member function 'void ncbi::objects::CWordPairIndexer::PopulateWordPairIndex(std::string)': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/indexer.cpp:3653:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'unsigned int'} [-Wsign-compare] + 3653 | for (int i = 0; i < str.length(); i++) { + | ~~^~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/sequence.cpp: In instantiation of 'void ncbi::objects::x_Translate(const Container&, std::string&, int, const ncbi::objects::CGenetic_code*, bool, bool, bool, bool, bool*) [with Container = std::__cxx11::basic_string; std::string = std::__cxx11::basic_string]': /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/sequence.cpp:3953:99: required from here /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/sequence.cpp:3496:43: warning: comparison of integer expressions of different signedness: 'std::__cxx11::basic_string::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare] @@ -25819,30 +25897,39 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/sequence.cpp: In instantiation of 'void ncbi::objects::x_Translate(const Container&, std::string&, int, const ncbi::objects::CGenetic_code*, bool, bool, bool, bool, bool*) [with Container = ncbi::objects::CSeqVector; std::string = std::__cxx11::basic_string]': /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/sequence.cpp:3981:99: required from here /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/sequence.cpp:3496:43: warning: comparison of integer expressions of different signedness: 'ncbi::TSeqPos' {aka 'unsigned int'} and 'int' [-Wsign-compare] -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp: In member function 'char* ncbi::CSeqDBAtlas::Alloc(size_t, ncbi::CSeqDBLockHold&, bool)': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp:359:16: warning: catching polymorphic type 'class std::bad_alloc' by value [-Wcatch-value=] - 359 | catch(std::bad_alloc) { - | ^~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp: At global scope: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp:160:13: warning: 'void ncbi::s_SeqDB_FileNotFound(const string&)' defined but not used [-Wunused-function] - 160 | static void s_SeqDB_FileNotFound(const string & fname) - | ^~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/map:60, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdb.cpp -o seqdb.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbbitset.cpp -o seqdbbitset.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbfilter.cpp -o seqdbfilter.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp -o seqdbatlas.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbalias.cpp -o seqdbalias.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp -o seqdbcommon.o +/usr/bin/g++ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp: In function 'void ncbi::SeqDB_ReadBinaryGiList(const string&, std::vector&)': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:834:26: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] + 834 | if (((endp - beginp) < 2U) + | ~~~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp: In function 'void ncbi::SeqDB_ReadMemoryPigList(const char*, const char*, std::vector&, bool*)': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:1025:32: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] + 1025 | if (((bendp - bbeginp) < 2U) + | ~~~~~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp: In function 'void ncbi::SeqDB_ReadMemoryTaxIdList(const char*, const char*, ncbi::CSeqDBGiList::STaxIdsOids&)': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:1098:52: warning: comparison of integer expressions of different signedness: 'Int4' {aka 'int'} and 'unsigned int' [-Wsign-compare] + 1098 | if (((bendp - bbeginp) < 2) || (bbeginp[0] != 0xFFFFFFFF) + | ~~~~~~~~~~~^~~~~~~~~~~~~ +In file included from /usr/include/c++/10/algorithm:62, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistl.hpp:180, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbithr_conf.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimtx.hpp:62, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:46, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp:35: -/usr/include/c++/10/bits/stl_tree.h: In member function 'std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string; _Val = std::pair, std::pair >; _KeyOfValue = std::_Select1st, std::pair > >; _Compare = std::less >; _Alloc = std::allocator, std::pair > >]': -/usr/include/c++/10/bits/stl_tree.h:2193:5: note: parameter passing for argument of type 'std::_Rb_tree, std::pair, std::pair >, std::_Select1st, std::pair > >, std::less >, std::allocator, std::pair > > >::const_iterator' changed in GCC 7.1 - 2193 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/serial/iterator.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/sequence.cpp:33: +/usr/include/c++/10/bits/stl_algo.h: In function '_RandomAccessIterator std::_V2::__rotate(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, std::random_access_iterator_tag) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >*, std::vector > > >]': +/usr/include/c++/10/bits/stl_algo.h:1318:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >*, std::vector > > >' changed in GCC 7.1 + 1318 | __rotate(_RandomAccessIterator __first, + | ^~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:1318:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >*, std::vector > > >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h:1318:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >*, std::vector > > >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h:1318:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >*, std::vector > > >' changed in GCC 7.1 In file included from /usr/include/c++/10/bits/stl_algo.h:61, from /usr/include/c++/10/algorithm:62, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistl.hpp:180, @@ -25871,20 +25958,6 @@ 1839 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 -In file included from /usr/include/c++/10/algorithm:62, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistl.hpp:180, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/serial/iterator.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/sequence.cpp:33: -/usr/include/c++/10/bits/stl_algo.h: In function '_RandomAccessIterator std::_V2::__rotate(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, std::random_access_iterator_tag) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >*, std::vector > > >]': -/usr/include/c++/10/bits/stl_algo.h:1318:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >*, std::vector > > >' changed in GCC 7.1 - 1318 | __rotate(_RandomAccessIterator __first, - | ^~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:1318:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >*, std::vector > > >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h:1318:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >*, std::vector > > >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h:1318:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >*, std::vector > > >' changed in GCC 7.1 In file included from /usr/include/c++/10/bits/stl_algo.h:61, from /usr/include/c++/10/algorithm:62, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistl.hpp:180, @@ -25913,6 +25986,24 @@ 1839 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/segmask' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/segmask/segmask.cpp -o segmask.o +/bin/rm -f libxalgosegmask.so .libxalgosegmask.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libxalgosegmask.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC segmask.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lblast -lxobjmgr -lxncbi -ldl -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgosegmask.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib +/bin/ln -f libxalgosegmask.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libxalgosegmask.so +/bin/ln -f .xalgosegmask.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.xalgosegmask.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/segmask' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/segmask' +cd objmgr/split/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=id2_split UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objmgr/split' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objmgr/split' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objmgr/split' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objmgr/split' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objmgr/split' In file included from /usr/include/c++/10/vector:72, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, @@ -25927,7 +26018,16 @@ /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/algorithm:62, +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/split TMPL=id2_split -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank/dispatcher.cpp -o dispatcher.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank/reader.cpp -o reader.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank/writer.cpp -o writer.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank/processors.cpp -o processors.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank/reader_snp.cpp -o reader_snp.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank/seqref.cpp -o seqref.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/shareIn file included from /usr/include/c++/10/algorithm:62, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistl.hpp:180, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:38, @@ -25950,14 +26050,70 @@ /usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdb.cpp -o seqdb.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbbitset.cpp -o seqdbbitset.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbfilter.cpp -o seqdbfilter.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp -o seqdbatlas.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbalias.cpp -o seqdbalias.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp -o seqdbcommon.o -/usr/bin/g++ In file included from /usr/include/c++/10/vector:72, +In file included from /usr/include/c++/10/bits/stl_algo.h:61, + from /usr/include/c++/10/algorithm:62, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistl.hpp:180, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbithr_conf.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimtx.hpp:62, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbireg.hpp:49, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/metareg.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:33: +/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = ncbi::CSeqDBGiList::STiOid; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': +/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, + | ^~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': +/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': +/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +In file included from /usr/include/c++/10/algorithm:62, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistl.hpp:180, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbithr_conf.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimtx.hpp:62, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbireg.hpp:49, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/metareg.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:33: +/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]': +/usr/include/c++/10/bits/stl_algo.h:1819:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1819 | __unguarded_linear_insert(_RandomAccessIterator __last, + | ^~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': +/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1839 | __insertion_sort(_RandomAccessIterator __first, + | ^~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': +/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': +/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': +/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1945 | __introsort_loop(_RandomAccessIterator __first, + | ^~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': +/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1945 | __introsort_loop(_RandomAccessIterator __first, + | ^~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/vector:72, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, @@ -25993,6 +26149,24 @@ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank/blob_id.cpp: In constructor 'ncbi::objects::CBlob_id::CBlob_id(ncbi::CTempString)': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank/blob_id.cpp:51:12: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=] + 51 | catch (CStringException) { + | ^~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h: In static member function 'static void ncbi::CSeqDBIdSet::x_SortAndUnique(std::vector&)': +/usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1974 | std::__introsort_loop(__first, __last, + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ + 1975 | std::__lg(__last - __first) * 2, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 1976 | __comp); + | ~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1891 | std::__insertion_sort(__first, __last, __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/bits/stl_algo.h:62, from /usr/include/c++/10/algorithm:62, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistl.hpp:180, @@ -26019,19 +26193,52 @@ /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector > >::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp: In function 'void ncbi::SeqDB_ReadBinaryGiList(const string&, std::vector&)': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:834:26: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] - 834 | if (((endp - beginp) < 2U) - | ~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp: In function 'void ncbi::SeqDB_ReadMemoryPigList(const char*, const char*, std::vector&, bool*)': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:1025:32: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] - 1025 | if (((bendp - bbeginp) < 2U) - | ~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp: In function 'void ncbi::SeqDB_ReadMemoryTaxIdList(const char*, const char*, ncbi::CSeqDBGiList::STaxIdsOids&)': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:1098:52: warning: comparison of integer expressions of different signedness: 'Int4' {aka 'int'} and 'unsigned int' [-Wsign-compare] - 1098 | if (((bendp - bbeginp) < 2) || (bbeginp[0] != 0xFFFFFFFF) - | ~~~~~~~~~~~^~~~~~~~~~~~~ -In file included from /usr/include/c++/10/algorithm:62, +In file included from /usr/include/c++/10/vector:72, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbithr_conf.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimtx.hpp:62, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbireg.hpp:49, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/metareg.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:33: +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': +/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 426 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/vector:67, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbithr_conf.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimtx.hpp:62, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbireg.hpp:49, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/metareg.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:33: +/usr/include/c++/10/bits/stl_vector.h: In member function 'void ncbi::CSeqDBGiList::GetTiList(std::vector&) const': +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1198 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_vector.h: In member function 'ncbi::CRef ncbi::CSeqDBIdSet::GetNegativeList()': +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1198 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objmgr/split' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/split/blob_splitter.cpp -o blob_splitter.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/split/blob_splitter_params.cpp -o blob_splitter_params.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/split/split_blob.cpp -o split_blob.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/split/blob_splitter_impl.cpp -o blob_splitter_impl.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/split/blob_splitter_parser.cpp -o blob_splitter_parser.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/split/blob_splitter_maker.cpp -o blob_splitter_maker.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/shIn file included from /usr/include/c++/10/algorithm:62, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistl.hpp:180, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:38, @@ -26131,14 +26338,46 @@ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:2346:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >*, std::vector > > >' changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h:2346:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >*, std::vector > > >' changed in GCC 7.1 -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/indexer.cpp: In function 'int ncbi::objects::SkipMixedContent(const char*)': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/indexer.cpp:3576:23: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] - 3576 | for (int i = 0; i < sizeof (mixedTags); i++) { - | ~~^~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/indexer.cpp: In member function 'void ncbi::objects::CWordPairIndexer::PopulateWordPairIndex(std::string)': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/indexer.cpp:3653:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'unsigned int'} [-Wsign-compare] - 3653 | for (int i = 0; i < str.length(); i++) { - | ~~^~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/vector:72, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbithr_conf.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimtx.hpp:62, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbireg.hpp:49, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/metareg.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:33: +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long int&}; _Tp = long long int; _Alloc = std::allocator]': +/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 426 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/vector:67, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbithr_conf.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimtx.hpp:62, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbireg.hpp:49, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/metareg.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:33: +/usr/include/c++/10/bits/stl_vector.h: In member function 'void ncbi::CSeqDBIdSet::x_BooleanSetOperation(ncbi::CSeqDBIdSet::EOperation, const std::vector&, bool, const std::vector&, bool, std::vector&, bool&)': +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1198 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1198 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1198 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h: In function '_OutputIterator std::__move_merge(_InputIterator, _InputIterator, _InputIterator, _InputIterator, _OutputIterator, _Compare) [with _InputIterator = __gnu_cxx::__normal_iterator >*, std::vector > > >; _OutputIterator = std::pair >*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/include/c++/10/bits/stl_algo.h:2650:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >*, std::vector > > >' changed in GCC 7.1 2650 | __move_merge(_InputIterator __first1, _InputIterator __last1, @@ -26201,35 +26440,45 @@ from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/serial/objistr.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/feature.cpp:33: -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair&}; _Tp = std::pair; _Alloc = std::allocator >]': -/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbithr_conf.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimtx.hpp:62, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbireg.hpp:49, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/metareg.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:33: +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ncbi::CSeqDBGiList::STiOid}; _Tp = ncbi::CSeqDBGiList::STiOid; _Alloc = std::allocator]': +/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:67, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/serial/objistr.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/feature.cpp:33: -/usr/include/c++/10/bits/stl_vector.h: In function 'void ncbi::objects::feature::GetOverlappingFeatures(ncbi::objects::CScope&, const ncbi::objects::CSeq_loc&, ncbi::objects::CSeqFeatData_Base::E_Choice, ncbi::objects::CSeqFeatData::ESubtype, ncbi::objects::sequence::EOverlapType, ncbi::objects::feature::TMappedFeatScores&, const ncbi::objects::SAnnotSelector*)': -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - 1198 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ncbi::CSeqDBGiList::STiOid}; _Tp = ncbi::CSeqDBGiList::STiOid; _Alloc = std::allocator]': +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]': +/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 426 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/vector.tcc: In member function 'void ncbi::CSeqDBIdSet::Compute(ncbi::CSeqDBIdSet::EOperation, const std::vector&, bool)': +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/vector.tcc: In member function 'void ncbi::CSeqDBIdSet::Compute(ncbi::CSeqDBIdSet::EOperation, const std::vector&, bool)': +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/vector.tcc: In constructor 'ncbi::CSeqDBIdSet::CSeqDBIdSet(const std::vector&, ncbi::CSeqDBIdSet::EIdType, bool)': +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/vector.tcc: In constructor 'ncbi::CSeqDBIdSet::CSeqDBIdSet(const std::vector&, ncbi::CSeqDBIdSet::EIdType, bool)': +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h: In function 'void std::__merge_adaptive(_BidirectionalIterator, _BidirectionalIterator, _BidirectionalIterator, _Distance, _Distance, _Pointer, _Distance, _Compare) [with _BidirectionalIterator = __gnu_cxx::__normal_iterator >*, std::vector > > >; _Distance = int; _Pointer = std::pair >*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/include/c++/10/bits/stl_algo.h:2427:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >*, std::vector > > >' changed in GCC 7.1 2427 | __merge_adaptive(_BidirectionalIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:2427:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >*, std::vector > > >' changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h:2427:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >*, std::vector > > >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - 1198 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:2443:39: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >*, std::vector > > >' changed in GCC 7.1 2443 | std::__move_merge_adaptive_backward(__first, __middle, __buffer, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -26298,36 +26547,37 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~ 2767 | __comp); | ~~~~~~~ -/usr/include/c++/10/bits/stl_vector.h: In member function 'ncbi::objects::feature::{anonymous}::TRangeArray& ncbi::objects::feature::CFeatTreeIndex::GetIndex(ncbi::objects::CSeqFeatData::ESubtype, bool, const TInfoArray&)': -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1198 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +In file included from /usr/include/c++/10/vector:72, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/serial/objistr.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/feature.cpp:33: +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair&}; _Tp = std::pair; _Alloc = std::allocator >]': +/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 + 426 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/vector:67, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/serial/objistr.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/feature.cpp:33: +/usr/include/c++/10/bits/stl_vector.h: In function 'void ncbi::objects::feature::GetOverlappingFeatures(ncbi::objects::CScope&, const ncbi::objects::CSeq_loc&, ncbi::objects::CSeqFeatData_Base::E_Choice, ncbi::objects::CSeqFeatData::ESubtype, ncbi::objects::sequence::EOverlapType, ncbi::objects::feature::TMappedFeatScores&, const ncbi::objects::SAnnotSelector*)': +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In file included from /usr/include/c++/10/algorithm:62, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistl.hpp:180, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/serial/objistr.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/feature.cpp:33: -/usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1974 | std::__introsort_loop(__first, __last, - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ - 1975 | std::__lg(__last - __first) * 2, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 1976 | __comp); - | ~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1891 | std::__insertion_sort(__first, __last, __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, @@ -26360,17 +26610,7 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 5038 | _DistanceType(__buf.size()), __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:67, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/serial/objistr.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/feature.cpp:33: -/usr/include/c++/10/bits/stl_vector.h: In function 'void ncbi::objects::feature::s_CollectBestOverlaps(ncbi::objects::feature::CFeatTree::TFeatArray&, ncbi::objects::feature::{anonymous}::TBestArray&, const ncbi::objects::feature::STypeLink&, ncbi::objects::feature::{anonymous}::TRangeArray&, ncbi::objects::feature::CFeatTree*, ncbi::objects::feature::{anonymous}::TCanonicalIdsMap&)': +/usr/include/c++/10/bits/stl_vector.h: In member function 'ncbi::objects::feature::{anonymous}::TRangeArray& ncbi::objects::feature::CFeatTreeIndex::GetIndex(ncbi::objects::CSeqFeatData::ESubtype, bool, const TInfoArray&)': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ @@ -26400,224 +26640,47 @@ /usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1891 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/bits/stl_algo.h:61, - from /usr/include/c++/10/algorithm:62, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistl.hpp:180, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:38, +In file included from /usr/include/c++/10/vector:67, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbithr_conf.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimtx.hpp:62, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbireg.hpp:49, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/metareg.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:33: -/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = ncbi::CSeqDBGiList::STiOid; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': -/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, - | ^~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': -/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': -/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/serial/objistr.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/feature.cpp:33: +/usr/include/c++/10/bits/stl_vector.h: In function 'void ncbi::objects::feature::s_CollectBestOverlaps(ncbi::objects::feature::CFeatTree::TFeatArray&, ncbi::objects::feature::{anonymous}::TBestArray&, const ncbi::objects::feature::STypeLink&, ncbi::objects::feature::{anonymous}::TRangeArray&, ncbi::objects::feature::CFeatTree*, ncbi::objects::feature::{anonymous}::TCanonicalIdsMap&)': +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1198 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1198 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1198 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/10/algorithm:62, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistl.hpp:180, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbithr_conf.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimtx.hpp:62, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbireg.hpp:49, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/metareg.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:33: -/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]': -/usr/include/c++/10/bits/stl_algo.h:1819:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1819 | __unguarded_linear_insert(_RandomAccessIterator __last, - | ^~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': -/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1839 | __insertion_sort(_RandomAccessIterator __first, - | ^~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': -/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': -/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': -/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1945 | __introsort_loop(_RandomAccessIterator __first, - | ^~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': -/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1945 | __introsort_loop(_RandomAccessIterator __first, - | ^~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h: In static member function 'static void ncbi::CSeqDBIdSet::x_SortAndUnique(std::vector&)': -/usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/serial/objistr.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/feature.cpp:33: +/usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1974 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1975 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1976 | __comp); | ~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1891 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:67, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/serial/iterator.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/sequence.cpp:33: -/usr/include/c++/10/bits/stl_vector.h: In function 'ncbi::CConstRef ncbi::objects::sequence::GetBestMrnaForCds(const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&, ncbi::objects::sequence::TBestFeatOpts, ncbi::objects::sequence::CGetOverlappingFeaturesPlugin*)': -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >*, std::vector > > >' changed in GCC 7.1 - 1198 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:72, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbithr_conf.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimtx.hpp:62, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbireg.hpp:49, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/metareg.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:33: -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': -/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 426 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:67, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbithr_conf.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimtx.hpp:62, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbireg.hpp:49, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/metareg.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:33: -/usr/include/c++/10/bits/stl_vector.h: In member function 'void ncbi::CSeqDBGiList::GetTiList(std::vector&) const': -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1198 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_vector.h: In member function 'ncbi::CRef ncbi::CSeqDBIdSet::GetNegativeList()': -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1198 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:72, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbithr_conf.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimtx.hpp:62, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbireg.hpp:49, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/metareg.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:33: -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long int&}; _Tp = long long int; _Alloc = std::allocator]': -/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 426 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:67, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbithr_conf.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimtx.hpp:62, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbireg.hpp:49, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/metareg.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:33: -/usr/include/c++/10/bits/stl_vector.h: In member function 'void ncbi::CSeqDBIdSet::x_BooleanSetOperation(ncbi::CSeqDBIdSet::EOperation, const std::vector&, bool, const std::vector&, bool, std::vector&, bool&)': -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1198 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1198 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1198 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:72, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbithr_conf.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimtx.hpp:62, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbireg.hpp:49, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/metareg.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:33: -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ncbi::CSeqDBGiList::STiOid}; _Tp = ncbi::CSeqDBGiList::STiOid; _Alloc = std::allocator]': -/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 426 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ncbi::CSeqDBGiList::STiOid}; _Tp = ncbi::CSeqDBGiList::STiOid; _Alloc = std::allocator]': -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]': -/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 426 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/vector.tcc: In member function 'void ncbi::CSeqDBIdSet::Compute(ncbi::CSeqDBIdSet::EOperation, const std::vector&, bool)': -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/vector.tcc: In member function 'void ncbi::CSeqDBIdSet::Compute(ncbi::CSeqDBIdSet::EOperation, const std::vector&, bool)': -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/vector.tcc: In constructor 'ncbi::CSeqDBIdSet::CSeqDBIdSet(const std::vector&, ncbi::CSeqDBIdSet::EIdType, bool)': -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/vector.tcc: In constructor 'ncbi::CSeqDBIdSet::CSeqDBIdSet(const std::vector&, ncbi::CSeqDBIdSet::EIdType, bool)': -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank/dispatcher.cpp -o dispatcher.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank/reader.cpp -o reader.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank/writer.cpp -o writer.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank/processors.cpp -o processors.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank/reader_snp.cpp -o reader_snp.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank/seqref.cpp -o seqref.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/shareIn file included from /usr/include/c++/10/algorithm:62, +In file included from /usr/include/c++/10/algorithm:62, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistl.hpp:180, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:38, @@ -26641,6 +26704,13 @@ /usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1891 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp: In member function 'int ncbi::CSeqDBVol::GetAmbigPartialSeq(int, char**, int, ncbi::ESeqDBAllocType, ncbi::CSeqDB::TSequenceRanges*, ncbi::CSeqDB::TSequenceRanges*, ncbi::CSeqDBLockHold&) const': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp:1518:50: warning: comparison of integer expressions of different signedness: 'ncbi::TSeqPos' {aka 'unsigned int'} and 'int' [-Wsign-compare] + 1518 | if ((*partial_ranges)[num_ranges - 1].second > base_length) { +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp: In member function 'void ncbi::CSeqDBVol::GetRawSeqAndAmbig(int, const char**, int*, int*, ncbi::CSeqDBLockHold&) const': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp:2776:11: warning: variable 'map_end' set but not used [-Wunused-but-set-variable] + 2776 | TIndx map_end = 0; + | ^~~~~~~ /usr/include/c++/10/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1662 | __heap_select(_RandomAccessIterator __first, @@ -26672,24 +26742,6 @@ /usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1891 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank/blob_id.cpp: In constructor 'ncbi::objects::CBlob_id::CBlob_id(ncbi::CTempString)': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank/blob_id.cpp:51:12: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=] - 51 | catch (CStringException) { - | ^~~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objmgr/util' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/weight.cpp -o weight.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/sequence.cpp -o sequence.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/feature.cpp -o feature.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/indexer.cpp -o indexer.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/seqtitle.cpp -o seqtitle.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/create_defline.cpp -o create_defline.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp: In member function 'int ncbi::CSeqDBVol::GetAmbigPartialSeq(int, char**, int, ncbi::ESeqDBAllocType, ncbi::CSeqDB::TSequenceRanges*, ncbi::CSeqDB::TSequenceRanges*, ncbi::CSeqDBLockHold&) const': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp:1518:50: warning: comparison of integer expressions of different signedness: 'ncbi::TSeqPos' {aka 'unsigned int'} and 'int' [-Wsign-compare] - 1518 | if ((*partial_ranges)[num_ranges - 1].second > base_length) { -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp: In member function 'void ncbi::CSeqDBVol::GetRawSeqAndAmbig(int, const char**, int*, int*, ncbi::CSeqDBLockHold&) const': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp:2776:11: warning: variable 'map_end' set but not used [-Wunused-but-set-variable] - 2776 | TIndx map_end = 0; - | ^~~~~~~ In file included from /usr/include/c++/10/vector:72, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, @@ -26698,17 +26750,57 @@ from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objmgr/util/obj_sniff.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/obj_sniff.cpp:33: -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ncbi::objects::CObjectsSniffer::SObjectDescription}; _Tp = ncbi::objects::CObjectsSniffer::SObjectDescription; _Alloc = std::allocator]': -/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objmgr/split/blob_splitter_impl.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/split/blob_splitter_impl.cpp:35: +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const ncbi::objects::SAnnotPiece&}; _Tp = ncbi::objects::SAnnotPiece; _Alloc = std::allocator]': +/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/vector.tcc: In member function 'bool ncbi::objects::CObjectsSniffer::x_ReadObject(ncbi::CObjectIStream&, ncbi::CObjectTypeInfo)': -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/create_defline.cpp: In member function 'void ncbi::objects::sequence::CDeflineGenerator::x_SetTitleFromProteinIdx(const ncbi::objects::CBioseq_Handle&)': +In file included from /usr/include/c++/10/vector:67, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objmgr/split/blob_splitter_impl.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/split/blob_splitter_impl.cpp:35: +/usr/include/c++/10/bits/stl_vector.h: In member function 'void ncbi::objects::CBlobSplitterImpl::SplitPieces(ncbi::objects::CAnnotPieces&)': +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1198 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1198 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +In file included from /usr/include/c++/10/vector:67, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/serial/iterator.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/sequence.cpp:33: +/usr/include/c++/10/bits/stl_vector.h: In function 'ncbi::CConstRef ncbi::objects::sequence::GetBestMrnaForCds(const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&, ncbi::objects::sequence::TBestFeatOpts, ncbi::objects::sequence::CGetOverlappingFeaturesPlugin*)': +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >*, std::vector > > >' changed in GCC 7.1 + 1198 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objmgr/util' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/weight.cpp -o weight.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/sequence.cpp -o sequence.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/feature.cpp -o feature.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/indexer.cpp -o indexer.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/seqtitle.cpp -o seqtitle.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/create_defline.cpp -o create_defline.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE /dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank/blob_id.cpp -o blob_id.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank/request_result.cpp -o request_result.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp -o reader_id1_base.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp -o reader_id2_base.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank/reader_service.cpp -o reader_service.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank/incr_time.cpp -o incr_time.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/create_defline.cpp: In member function 'void ncbi::objects::sequence::CDeflineGenerator::x_SetTitleFromProteinIdx(const ncbi::objects::CBioseq_Handle&)': /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/create_defline.cpp:2117:38: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'unsigned int'} [-Wsign-compare] 2117 | if (offset > 0 && offset < m_MainTitle.length()) { | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ @@ -26724,43 +26816,6 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/create_defline.cpp:3637:23: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 3637 | for (int i = 0; i < sizeof (s_tpaPrefixList) / sizeof (const char*); i++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp: In member function 'ncbi::CSeqDBIsam::EErrorCode ncbi::CSeqDBIsam::x_StringSearch(const string&, std::vector >&, std::vector >&, std::vector&)': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp:1001:9: warning: variable 'found_short' set but not used [-Wunused-but-set-variable] - 1001 | int found_short(-1); - | ^~~~~~~~~~~ - -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbfile.cpp -o seqdbfile.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp -o seqdbimpl.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp -o seqdbvol.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbvolset.cpp -o seqdbvolset.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdboidlist.cpp -o seqdboidlist.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp -o seqdbisam.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/seq_loc_util.cpp: In function 'bool ncbi::objects::sequence::BadSeqLocSortOrder(const ncbi::objects::CBioseq_Handle&, const ncbi::objects::CSeq_loc&)': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/seq_loc_util.cpp:612:14: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] - 612 | } catch (CException) { - | ^~~~~~~~~~ -In file included from /usr/include/c++/10/vector:72, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/blast/seqdb_reader/impl/seqdbfile.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/blast/seqdb_reader/impl/seqdbisam.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp:34: -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]': -/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 426 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/vector.tcc: In member function 'void ncbi::CSeqDBIsam::x_ExtractPageData(const string&, ncbi::CSeqDBIsam::TIndx, const char*, const char*, std::vector&, std::vector >&, std::vector >&)': -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/map:60, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:45, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, @@ -26777,8 +26832,22 @@ /usr/include/c++/10/bits/stl_tree.h:2458:7: note: parameter passing for argument of type 'std::_Rb_tree::CInfo, ncbi::CObjectCounterLocker> >, std::_Select1st::CInfo, ncbi::CObjectCounterLocker> > >, std::less, std::allocator::CInfo, ncbi::CObjectCounterLocker> > > >::const_iterator' changed in GCC 7.1 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/vector.tcc: In member function 'void ncbi::CSeqDBIsam::x_LoadIndex(ncbi::CSeqDBFileMemMap&, std::vector&, std::vector&) [with T = std::__cxx11::basic_string]': -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +In file included from /usr/include/c++/10/vector:72, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objmgr/util/obj_sniff.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/obj_sniff.cpp:33: +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ncbi::objects::CObjectsSniffer::SObjectDescription}; _Tp = ncbi::objects::CObjectsSniffer::SObjectDescription; _Alloc = std::allocator]': +/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 426 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/vector.tcc: In member function 'bool ncbi::objects::CObjectsSniffer::x_ReadObject(ncbi::CObjectIStream&, ncbi::CObjectTypeInfo)': +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/map:61, @@ -26809,7 +26878,13 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/map:60, + -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbfile.cpp -o seqdbfile.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp -o seqdbimpl.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp -o seqdbvol.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbvolset.cpp -o seqdbvolset.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdboidlist.cpp -o seqdboidlist.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp -o seqdbisam.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -In file included from /usr/include/c++/10/map:60, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:45, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, @@ -26985,13 +27060,6 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/vector.tcc: In member function 'void ncbi::CSeqDBIsam::x_TranslateGiList(int, ncbi::CSeqDBGiList&) [with T = int]': -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/map:60, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:45, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, @@ -27028,11 +27096,6 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp:34: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/blast/seqdb_reader/impl/seqdbisam.hpp:633:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 633 | } - | ^ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/blast/seqdb_reader/impl/seqdbisam.hpp:633:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 /usr/include/c++/10/bits/stl_map.h: In member function 'ncbi::objects::GBL::CInfoCache::TInfoLock ncbi::objects::GBL::CInfoCache::GetLoadLock(ncbi::objects::GBL::CInfoRequestor&, const key_type&, ncbi::objects::GBL::EDoNotWait) [with KeyType = ncbi::objects::CSeq_id_Handle; DataType = ncbi::objects::CDataLoader::SHashFound]': /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree::CInfo, ncbi::CObjectCounterLocker> >, std::_Select1st::CInfo, ncbi::CObjectCounterLocker> > >, std::less, std::allocator::CInfo, ncbi::CObjectCounterLocker> > > >::const_iterator' changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, @@ -27041,34 +27104,6 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:72, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/blast/seqdb_reader/impl/seqdbfile.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/blast/seqdb_reader/impl/seqdbisam.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp:34: -/usr/include/c++/10/bits/vector.tcc: In member function 'void ncbi::CSeqDBIsam::x_TranslateGiList(int, ncbi::CSeqDBGiList&) [with T = long long int]': -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/map:60, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:45, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, @@ -27105,13 +27140,6 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp:34: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/blast/seqdb_reader/impl/seqdbisam.hpp:633:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 633 | } - | ^ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/blast/seqdb_reader/impl/seqdbisam.hpp:633:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/blast/seqdb_reader/impl/seqdbisam.hpp:633:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/blast/seqdb_reader/impl/seqdbisam.hpp:633:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 /usr/include/c++/10/bits/stl_map.h: In member function 'ncbi::objects::GBL::CInfoCache::TInfoLock ncbi::objects::GBL::CInfoCache::GetLoadLock(ncbi::objects::GBL::CInfoRequestor&, const key_type&, ncbi::objects::GBL::EDoNotWait) [with KeyType = ncbi::objects::CSeq_id_Handle; DataType = unsigned int]': /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree::CInfo, ncbi::CObjectCounterLocker> >, std::_Select1st::CInfo, ncbi::CObjectCounterLocker> > >, std::less, std::allocator::CInfo, ncbi::CObjectCounterLocker> > > >::const_iterator' changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, @@ -27156,28 +27184,6 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:72, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/blast/seqdb_reader/impl/seqdbfile.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/blast/seqdb_reader/impl/seqdbisam.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp:34: -/usr/include/c++/10/bits/vector.tcc: In member function 'void ncbi::CSeqDBIsam::x_TranslateGiList(int, ncbi::CSeqDBGiList&) [with T = unsigned int]': -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_map.h: In member function 'ncbi::objects::GBL::CInfoCache::TInfoLock ncbi::objects::GBL::CInfoCache::GetLoadLock(ncbi::objects::GBL::CInfoRequestor&, const key_type&, ncbi::objects::GBL::EDoNotWait) [with KeyType = ncbi::objects::CSeq_id_Handle; DataType = ncbi::objects::CDataLoader::STypeFound]': /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree::CInfo, ncbi::CObjectCounterLocker> >, std::_Select1st::CInfo, ncbi::CObjectCounterLocker> > >, std::less, std::allocator::CInfo, ncbi::CObjectCounterLocker> > > >::const_iterator' changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, @@ -27186,11 +27192,6 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp:34: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/blast/seqdb_reader/impl/seqdbisam.hpp:633:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 633 | } - | ^ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/blast/seqdb_reader/impl/seqdbisam.hpp:633:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 In file included from /usr/include/c++/10/map:60, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:45, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, @@ -27236,38 +27237,36 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/map:60, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/serial/iterator.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/seq_loc_util.cpp:35: -/usr/include/c++/10/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = ncbi::objects::CSeq_id_Handle; _Val = std::pair >, std::__cxx11::list > > >; _KeyOfValue = std::_Select1st >, std::__cxx11::list > > > >; _Compare = std::less; _Alloc = std::allocator >, std::__cxx11::list > > > >]': -/usr/include/c++/10/bits/stl_tree.h:2458:7: note: parameter passing for argument of type 'std::_Rb_tree >, std::__cxx11::list > > >, std::_Select1st >, std::__cxx11::list > > > >, std::less, std::allocator >, std::__cxx11::list > > > > >::const_iterator' changed in GCC 7.1 - 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/map:61, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:45, +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/seq_loc_util.cpp: In function 'bool ncbi::objects::sequence::BadSeqLocSortOrder(const ncbi::objects::CBioseq_Handle&, const ncbi::objects::CSeq_loc&)': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/seq_loc_util.cpp:612:14: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] + 612 | } catch (CException) { + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp: In member function 'ncbi::CSeqDBIsam::EErrorCode ncbi::CSeqDBIsam::x_StringSearch(const string&, std::vector >&, std::vector >&, std::vector&)': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp:1001:9: warning: variable 'found_short' set but not used [-Wunused-but-set-variable] + 1001 | int found_short(-1); + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/split/annot_piece.cpp: In member function 'std::multiset::iterator ncbi::objects::SIdAnnotPieces::Erase(std::multiset::iterator)': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/split/annot_piece.cpp:221:35: note: parameter passing for argument of type 'std::multiset::iterator' {aka 'std::_Rb_tree, std::less, std::allocator >::const_iterator'} changed in GCC 7.1 + 221 | SIdAnnotPieces::TPieces::iterator SIdAnnotPieces::Erase(TPieces::iterator it) + | ^~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/vector:72, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/serial/iterator.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/seq_loc_util.cpp:35: -/usr/include/c++/10/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = ncbi::objects::CSeq_id_Handle; _Tp = std::pair >, std::__cxx11::list > >; _Compare = std::less; _Alloc = std::allocator >, std::__cxx11::list > > > >]': -/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree >, std::__cxx11::list > > >, std::_Select1st >, std::__cxx11::list > > > >, std::less, std::allocator >, std::__cxx11::list > > > > >::const_iterator' changed in GCC 7.1 - 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 502 | std::tuple(__k), - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 503 | std::tuple<>()); - | ~~~~~~~~~~~~~~~ + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiargs.hpp:84, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbi_param.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp:32: +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ncbi::objects::CSeq_id_Handle}; _Tp = ncbi::objects::CSeq_id_Handle; _Alloc = std::allocator]': +/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 426 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_map.h: In member function 'bool ncbi::objects::CReaderRequestResult::SetLoadedAccFromSeqIds(const ncbi::objects::CSeq_id_Handle&, const ncbi::objects::CLoadLockSeqIds&)': /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree::CInfo, ncbi::CObjectCounterLocker> >, std::_Select1st::CInfo, ncbi::CObjectCounterLocker> > >, std::less, std::allocator::CInfo, ncbi::CObjectCounterLocker> > > >::const_iterator' changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, @@ -27276,13 +27275,25 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank/blob_id.cpp -o blob_id.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank/request_result.cpp -o request_result.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp -o reader_id1_base.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp -o reader_id2_base.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank/reader_service.cpp -o reader_service.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank/incr_time.cpp -o incr_time.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE /usr/include/c++/10/bits/stl_map.h: In member function 'bool ncbi::objects::CReaderRequestResult::SetLoadedGiFromSeqIds(const ncbi::objects::CSeq_id_Handle&, const ncbi::objects::CLoadLockSeqIds&)': +In file included from /usr/include/c++/10/map:60, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiargs.hpp:84, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbi_param.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp:32: +/usr/include/c++/10/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = ncbi::objects::CSeq_id_Handle; _Val = std::pair > >; _KeyOfValue = std::_Select1st > > >; _Compare = std::less; _Alloc = std::allocator > > >]': +/usr/include/c++/10/bits/stl_tree.h:2458:7: note: parameter passing for argument of type 'std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator' changed in GCC 7.1 + 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_map.h: In member function 'bool ncbi::objects::CReaderRequestResult::SetLoadedGiFromSeqIds(const ncbi::objects::CSeq_id_Handle&, const ncbi::objects::CLoadLockSeqIds&)': /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree::CInfo, ncbi::CObjectCounterLocker> >, std::_Select1st::CInfo, ncbi::CObjectCounterLocker> > >, std::less, std::allocator::CInfo, ncbi::CObjectCounterLocker> > > >::const_iterator' changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -27290,14 +27301,6 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_map.h: In member function 'bool ncbi::objects::CReaderRequestResult::SetLoadedLabelFromSeqIds(const ncbi::objects::CSeq_id_Handle&, const ncbi::objects::CLoadLockSeqIds&)': -/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree >::CInfo, ncbi::CObjectCounterLocker> >, std::_Select1st >::CInfo, ncbi::CObjectCounterLocker> > >, std::less, std::allocator >::CInfo, ncbi::CObjectCounterLocker> > > >::const_iterator' changed in GCC 7.1 - 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 502 | std::tuple(__k), - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 503 | std::tuple<>()); - | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, @@ -27312,42 +27315,54 @@ from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbi_param.hpp:41, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp:32: -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ncbi::objects::CSeq_id_Handle}; _Tp = ncbi::objects::CSeq_id_Handle; _Alloc = std::allocator]': -/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 426 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_map.h: In function 'void ncbi::objects::sequence::s_SeqLocToRangeInfoMapByStrand(const ncbi::objects::CSeq_loc&, ncbi::objects::sequence::TRangeInfoMapByStrand&, ncbi::objects::sequence::TSynMap&, ncbi::objects::CScope*)': -/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree >, std::__cxx11::list > > >, std::_Select1st >, std::__cxx11::list > > > >, std::less, std::allocator >, std::__cxx11::list > > > > >::const_iterator' changed in GCC 7.1 - 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 502 | std::tuple(__k), - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 503 | std::tuple<>()); - | ~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree >, std::__cxx11::list > > >, std::_Select1st >, std::__cxx11::list > > > >, std::less, std::allocator >, std::__cxx11::list > > > > >::const_iterator' changed in GCC 7.1 +/usr/include/c++/10/bits/vector.tcc: In member function 'void ncbi::objects::CId2ReaderBase::x_ProcessGetSeqIdSeqId(ncbi::objects::CReaderRequestResult&, ncbi::objects::SId2LoadedSet&, const ncbi::objects::CID2_Reply&, const ncbi::objects::CSeq_id_Handle&, const ncbi::objects::CID2_Request_Get_Seq_id&, const ncbi::objects::CID2_Reply_Get_Seq_id*)': +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/map:61, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiargs.hpp:84, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbi_param.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp:32: +/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator' changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_map.h: In function 'void ncbi::objects::sequence::s_SeqLocToTotalRangesInfoMapByStrand(const ncbi::objects::CSeq_loc&, ncbi::objects::sequence::TRangeInfoMapByStrand&, ncbi::objects::sequence::TSynMap&, ncbi::objects::sequence::TTopologyMap&, ncbi::objects::sequence::TOverlapFlags, ncbi::objects::CScope*)': -/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree >, std::__cxx11::list > > >, std::_Select1st >, std::__cxx11::list > > > >, std::less, std::allocator >, std::__cxx11::list > > > > >::const_iterator' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator' changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree >, std::__cxx11::list > > >, std::_Select1st >, std::__cxx11::list > > > >, std::less, std::allocator >, std::__cxx11::list > > > > >::const_iterator' changed in GCC 7.1 +are/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/split/id_range.cpp -o id_range.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/split/object_splitinfo.cpp -o object_splitinfo.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/split/asn_sizer.cpp -o asn_sizer.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/split/annot_piece.cpp -o annot_piece.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/split/chunk_info.cpp -o chunk_info.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/split/size.cpp -o size.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c/usr/include/c++/10/bits/stl_map.h: In member function 'bool ncbi::objects::CReaderRequestResult::SetLoadedLabelFromSeqIds(const ncbi::objects::CSeq_id_Handle&, const ncbi::objects::CLoadLockSeqIds&)': +/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree >::CInfo, ncbi::CObjectCounterLocker> >, std::_Select1st >::CInfo, ncbi::CObjectCounterLocker> > >, std::less, std::allocator >::CInfo, ncbi::CObjectCounterLocker> > > >::const_iterator' changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/map:60, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:45, +In file included from /usr/include/c++/10/vector:72, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, @@ -27356,14 +27371,35 @@ from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbicntr.hpp:40, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiargs.hpp:84, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbi_param.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp:32: -/usr/include/c++/10/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = ncbi::objects::CSeq_id_Handle; _Val = std::pair > >; _KeyOfValue = std::_Select1st > > >; _Compare = std::less; _Alloc = std::allocator > > >]': -/usr/include/c++/10/bits/stl_tree.h:2458:7: note: parameter passing for argument of type 'std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator' changed in GCC 7.1 - 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/blast/seqdb_reader/impl/seqdbfile.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/blast/seqdb_reader/impl/seqdbisam.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp:34: +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]': +/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 426 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/vector.tcc: In member function 'void ncbi::CSeqDBIsam::x_ExtractPageData(const string&, ncbi::CSeqDBIsam::TIndx, const char*, const char*, std::vector&, std::vector >&, std::vector >&)': +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/vector.tcc: In member function 'void ncbi::CSeqDBIsam::x_LoadIndex(ncbi::CSeqDBFileMemMap&, std::vector&, std::vector&) [with T = std::__cxx11::basic_string]': +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/vector.tcc: In member function 'void ncbi::CSeqDBIsam::x_TranslateGiList(int, ncbi::CSeqDBGiList&) [with T = int]': +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp:34: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/blast/seqdb_reader/impl/seqdbisam.hpp:633:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 633 | } + | ^ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/blast/seqdb_reader/impl/seqdbisam.hpp:633:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 In file included from /usr/include/c++/10/vector:72, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, @@ -27374,16 +27410,33 @@ from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbicntr.hpp:40, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiargs.hpp:84, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbi_param.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp:32: -/usr/include/c++/10/bits/vector.tcc: In member function 'void ncbi::objects::CId2ReaderBase::x_ProcessGetSeqIdSeqId(ncbi::objects::CReaderRequestResult&, ncbi::objects::SId2LoadedSet&, const ncbi::objects::CID2_Reply&, const ncbi::objects::CSeq_id_Handle&, const ncbi::objects::CID2_Request_Get_Seq_id&, const ncbi::objects::CID2_Reply_Get_Seq_id*)': -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/blast/seqdb_reader/impl/seqdbfile.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/blast/seqdb_reader/impl/seqdbisam.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp:34: +/usr/include/c++/10/bits/vector.tcc: In member function 'void ncbi::CSeqDBIsam::x_TranslateGiList(int, ncbi::CSeqDBGiList&) [with T = long long int]': +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/map:61, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:45, +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp:34: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/blast/seqdb_reader/impl/seqdbisam.hpp:633:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 633 | } + | ^ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/blast/seqdb_reader/impl/seqdbisam.hpp:633:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/blast/seqdb_reader/impl/seqdbisam.hpp:633:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/blast/seqdb_reader/impl/seqdbisam.hpp:633:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 +In file included from /usr/include/c++/10/vector:72, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, @@ -27392,46 +27445,147 @@ from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbicntr.hpp:40, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiargs.hpp:84, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbi_param.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp:32: -/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator' changed in GCC 7.1 + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/blast/seqdb_reader/impl/seqdbfile.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/blast/seqdb_reader/impl/seqdbisam.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp:34: +/usr/include/c++/10/bits/vector.tcc: In member function 'void ncbi::CSeqDBIsam::x_TranslateGiList(int, ncbi::CSeqDBGiList&) [with T = unsigned int]': +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp:34: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/blast/seqdb_reader/impl/seqdbisam.hpp:633:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 633 | } + | ^ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/blast/seqdb_reader/impl/seqdbisam.hpp:633:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 +In file included from /usr/include/c++/10/map:60, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/serial/iterator.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/seq_loc_util.cpp:35: +/usr/include/c++/10/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = ncbi::objects::CSeq_id_Handle; _Val = std::pair >, std::__cxx11::list > > >; _KeyOfValue = std::_Select1st >, std::__cxx11::list > > > >; _Compare = std::less; _Alloc = std::allocator >, std::__cxx11::list > > > >]': +/usr/include/c++/10/bits/stl_tree.h:2458:7: note: parameter passing for argument of type 'std::_Rb_tree >, std::__cxx11::list > > >, std::_Select1st >, std::__cxx11::list > > > >, std::less, std::allocator >, std::__cxx11::list > > > > >::const_iterator' changed in GCC 7.1 + 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/map:61, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/serial/iterator.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/seq_loc_util.cpp:35: +/usr/include/c++/10/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = ncbi::objects::CSeq_id_Handle; _Tp = std::pair >, std::__cxx11::list > >; _Compare = std::less; _Alloc = std::allocator >, std::__cxx11::list > > > >]': +/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree >, std::__cxx11::list > > >, std::_Select1st >, std::__cxx11::list > > > >, std::less, std::allocator >, std::__cxx11::list > > > > >::const_iterator' changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_map.h: In function 'void ncbi::objects::sequence::s_SeqLocToRangeInfoMapByStrand(const ncbi::objects::CSeq_loc&, ncbi::objects::sequence::TRangeInfoMapByStrand&, ncbi::objects::sequence::TSynMap&, ncbi::objects::CScope*)': +/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree >, std::__cxx11::list > > >, std::_Select1st >, std::__cxx11::list > > > >, std::less, std::allocator >, std::__cxx11::list > > > > >::const_iterator' changed in GCC 7.1 + 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 502 | std::tuple(__k), + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 503 | std::tuple<>()); + | ~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree >, std::__cxx11::list > > >, std::_Select1st >, std::__cxx11::list > > > >, std::less, std::allocator >, std::__cxx11::list > > > > >::const_iterator' changed in GCC 7.1 + 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 502 | std::tuple(__k), + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 503 | std::tuple<>()); + | ~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_map.h: In function 'void ncbi::objects::sequence::s_SeqLocToTotalRangesInfoMapByStrand(const ncbi::objects::CSeq_loc&, ncbi::objects::sequence::TRangeInfoMapByStrand&, ncbi::objects::sequence::TSynMap&, ncbi::objects::sequence::TTopologyMap&, ncbi::objects::sequence::TOverlapFlags, ncbi::objects::CScope*)': +/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree >, std::__cxx11::list > > >, std::_Select1st >, std::__cxx11::list > > > >, std::less, std::allocator >, std::__cxx11::list > > > > >::const_iterator' changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree >, std::__cxx11::list > > >, std::_Select1st >, std::__cxx11::list > > > >, std::less, std::allocator >, std::__cxx11::list > > > > >::const_iterator' changed in GCC 7.1 + 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 502 | std::tuple(__k), + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 503 | std::tuple<>()); + | ~~~~~~~~~~~~~~~ +++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/split/split_exceptions.cpp -o split_exceptions.o +/bin/rm -f libid2_split.so .libid2_split.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libid2_split.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC blob_splitter.o blob_splitter_params.o split_blob.o blob_splitter_impl.o blob_splitter_parser.o blob_splitter_maker.o id_range.o object_splitinfo.o asn_sizer.o annot_piece.o chunk_info.o size.o split_exceptions.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lxobjmgr -lseqsplit -lseqset -lseq -lgeneral -lxser -lxcompress -lxncbi -ldl -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2_split.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib +/bin/ln -f libid2_split.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libid2_split.so +/bin/ln -f .id2_split.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.id2_split.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objmgr/split' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objmgr/split' specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbtax.cpp -o seqdbtax.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.cpp -o seqdbgilistset.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbexpert.cpp -o seqdbexpert.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbblob.cpp -o seqdbblob.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbcol.cpp -o seqdbcol.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbgimask.cpp -o seqdbgimask.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/objutil.cpp: In instantiation of 'bool ncbi::objects::{anonymous}::s_IsTagStart(const _T&, const _T&) [with _T = const char*]': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/objutil.cpp:1824:81: required from here -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/objutil.cpp:1752:57: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [-Wsign-compare] - 1752 | for (int possible_str_idx = 0; possible_str_idx < num_possible_tag_starts; ++possible_str_idx) { - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/objutil.cpp:1114:13: warning: 'bool ncbi::objects::s_IsValidAccession(const string&)' defined but not used [-Wunused-function] - 1114 | static bool s_IsValidAccession(const string& acc) - | ^~~~~~~~~~~~~~~~~~ --D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/obj_sniff.cpp -o obj_sniff.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST-D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/obj_sniff.cpp -o obj_sniff.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/seq_loc_util.cpp -o seq_loc_util.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/seq_align_util.cpp -o seq_align_util.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/seq_trimmer.cpp -o seq_trimmer.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/bioseqgaps_ci.cpp -o bioseqgaps_ci.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/objutil.cpp -o objutil.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/feature_edit.cpp -o feature_edit.o -/usr/bin/g++ -stdIn file included from /usr/include/c++/10/bits/stl_algo.h:61, +/usr/bin/g++ -std-I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank/info_cache.cpp -o info_cache.o +/bin/rm -f libncbi_xreader.a .libncbi_xreader.a.stamp +/bin/rm -f libncbi_xreader.so .libncbi_xreader.so.stamp +ar cr libncbi_xreader.a dispatcher.o reader.o writer.o processors.o reader_snp.o seqref.o blob_id.o request_result.o reader_id1_base.o reader_id2_base.o reader_service.o incr_time.o info_cache.o +/usr/bin/g++ -std=gnu++14 -shared -o libncbi_xreader.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC dispatcher.o reader.o writer.o processors.o reader_snp.o seqref.o blob_id.o request_result.o reader_id1_base.o reader_id2_base.o reader_service.o incr_time.o info_cache.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lid2 -lxobjmgr -lid1 -lseqedit -lseqsplit -lsubmit -lgenome_collection -lseqset -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxser -lsequtil -lxconnect -lxutil -lxncbi -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -ldl -ldl -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader.a /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib +/bin/ln -f libncbi_xreader.a /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libncbi_xreader.a +/bin/ln -f .ncbi_xreader-static.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.ncbi_xreader-static.dep +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib +/bin/ln -f libncbi_xreader.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libncbi_xreader.so +/bin/ln -f .ncbi_xreader.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.ncbi_xreader.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' +cd objtools/data_loaders/genbank/cache/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=ncbi_xreader_cache UNIX_PROJ="" sources= configurables=configurables.null +cd objtools/data_loaders/genbank/id1/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=ncbi_xreader_id1 UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/cache' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/cache' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/cache' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/cache' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/cache' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank/id1 TMPL=ncbi_xreader_id1 -w -j4 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank/cache TMPL=ncbi_xreader_cache -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/objutil.cpp: In instantiation of 'bool ncbi::objects::{anonymous}::s_IsTagStart(const _T&, const _T&) [with _T = const char*]': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/objutil.cpp:1824:81: required from here +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/objutil.cpp:1752:57: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [-Wsign-compare] + 1752 | for (int possible_str_idx = 0; possible_str_idx < num_possible_tag_starts; ++possible_str_idx) { + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/bits/stl_algo.h:61, from /usr/include/c++/10/algorithm:62, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistl.hpp:180, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbi_limits.hpp:61, @@ -27470,30 +27624,9 @@ /usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ --I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank/info_cache.cpp -o info_cache.o -/bin/rm -f libncbi_xreader.a .libncbi_xreader.a.stamp -/bin/rm -f libncbi_xreader.so .libncbi_xreader.so.stamp -ar cr libncbi_xreader.a dispatcher.o reader.o writer.o processors.o reader_snp.o seqref.o blob_id.o request_result.o reader_id1_base.o reader_id2_base.o reader_service.o incr_time.o info_cache.o -/usr/bin/g++ -std=gnu++14 -shared -o libncbi_xreader.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC dispatcher.o reader.o writer.o processors.o reader_snp.o seqref.o blob_id.o request_result.o reader_id1_base.o reader_id2_base.o reader_service.o incr_time.o info_cache.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lid2 -lxobjmgr -lid1 -lseqedit -lseqsplit -lsubmit -lgenome_collection -lseqset -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxser -lsequtil -lxconnect -lxutil -lxncbi -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -ldl -ldl -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader.a /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -/bin/ln -f libncbi_xreader.a /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libncbi_xreader.a -/bin/ln -f .ncbi_xreader-static.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.ncbi_xreader-static.dep -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -/bin/ln -f libncbi_xreader.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libncbi_xreader.so -/bin/ln -f .ncbi_xreader.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.ncbi_xreader.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' -cd algo/segmask/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xalgosegmask UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/segmask' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/segmask' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/segmask' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/segmask' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/segmask' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/segmask TMPL=xalgosegmask -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/objutil.cpp:1114:13: warning: 'bool ncbi::objects::s_IsValidAccession(const string&)' defined but not used [-Wunused-function] + 1114 | static bool s_IsValidAccession(const string& acc) + | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, @@ -27556,26 +27689,6 @@ /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/segmask' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/segmask/segmask.cpp -o segmask.o -/bin/rm -f libxalgosegmask.so .libxalgosegmask.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libxalgosegmask.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC segmask.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lblast -lxobjmgr -lxncbi -ldl -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgosegmask.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -/bin/ln -f libxalgosegmask.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libxalgosegmask.so -/bin/ln -f .xalgosegmask.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.xalgosegmask.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/segmask' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/segmask' -cd objmgr/split/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=id2_split UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objmgr/split' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objmgr/split' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objmgr/split' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objmgr/split' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objmgr/split' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/split TMPL=id2_split -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. DB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp -o seqdbobj.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdb_lmdb.cpp -o seqdb_lmdb.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/seqdblmdbset.cpp -o seqdblmdbset.o @@ -27587,17 +27700,17 @@ /bin/ln -f .seqdb.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.seqdb.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader' -cd objtools/data_loaders/genbank/cache/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=ncbi_xreader_cache UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/cache' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/cache' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/cache' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/cache' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/cache' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank/cache TMPL=ncbi_xreader_cache -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +cd objtools/data_loaders/genbank/id2/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=ncbi_xreader_id2 UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank/id2 TMPL=ncbi_xreader_id2 -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /usr/include/c++/10/vector:72, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, @@ -27606,97 +27719,18 @@ from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objmgr/split/blob_splitter_impl.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/split/blob_splitter_impl.cpp:35: -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const ncbi::objects::SAnnotPiece&}; _Tp = ncbi::objects::SAnnotPiece; _Alloc = std::allocator]': -/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 426 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:67, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objmgr/split/blob_splitter_impl.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/split/blob_splitter_impl.cpp:35: -/usr/include/c++/10/bits/stl_vector.h: In member function 'void ncbi::objects::CBlobSplitterImpl::SplitPieces(ncbi::objects::CAnnotPieces&)': -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1198 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1198 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/autodef_mod_combo.cpp: In member function 'bool ncbi::objects::CAutoDefModifierCombo::AddQual(bool, int, bool)': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/autodef_mod_combo.cpp:1034:10: warning: unused variable 'added' [-Wunused-variable] - 1034 | bool added = false, rval = false; - | ^~~~~ -=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/autodef.cpp -o autodef.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/autodef_feature_clause_base.cpp -o autodef_feature_clause_base.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/autodef_source_desc.cpp -o autodef_source_desc.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/autodef_available_modifier.cpp -o autodef_available_modifier.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/autodef_mod_combo.cpp -o autodef_mod_combo.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/autodef_source_group.cpp -o autodef_source_group.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILmake[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objmgr/split' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/split/blob_splitter.cpp -o blob_splitter.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/split/blob_splitter_params.cpp -o blob_splitter_params.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/split/split_blob.cpp -o split_blob.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/split/blob_splitter_impl.cpp -o blob_splitter_impl.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/split/blob_splitter_parser.cpp -o blob_splitter_parser.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/split/blob_splitter_maker.cpp -o blob_splitter_maker.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/shIn file included from /usr/include/c++/10/vector:72, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbicntr.hpp:40, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/data_loaders/genbank/reader.hpp:32, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/data_loaders/genbank/cache/reader_cache.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp:31: -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ncbi::objects::CSeq_id_Handle}; _Tp = ncbi::objects::CSeq_id_Handle; _Alloc = std::allocator]': + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiargs.hpp:84, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbi_param.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp:32: +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const ncbi::objects::CSeq_id_Handle&}; _Tp = ncbi::objects::CSeq_id_Handle; _Alloc = std::allocator]': /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/vector.tcc: In member function 'bool ncbi::objects::CCacheReader::ReadSeq_ids(ncbi::objects::CReaderRequestResult&, const string&, ncbi::objects::CLoadLockSeqIds&)': -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/cache' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp -o reader_cache.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp -o writer_cache.o -/bin/rm -f libncbi_xreader_cache.a .libncbi_xreader_cache.a.stamp -/bin/rm -f libncbi_xreader_cache.so .libncbi_xreader_cache.so.stamp -ar cr libncbi_xreader_cache.a reader_cache.o writer_cache.o -/usr/bin/g++ -std=gnu++14 -shared -o libncbi_xreader_cache.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC reader_cache.o writer_cache.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lncbi_xreader -lid2 -lxobjmgr -lid1 -lseqedit -lseqsplit -lsubmit -lgenome_collection -lseqset -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxser -lsequtil -lxconnect -lxutil -lxncbi -ldl -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_cache.a /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -/bin/ln -f libncbi_xreader_cache.a /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libncbi_xreader_cache.a -/bin/ln -f .ncbi_xreader_cache-static.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.ncbi_xreader_cache-static.dep -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_cache.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -/bin/ln -f libncbi_xreader_cache.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libncbi_xreader_cache.so -/bin/ln -f .ncbi_xreader_cache.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.ncbi_xreader_cache.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/cache' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/cache' -cd objtools/data_loaders/genbank/id1/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=ncbi_xreader_id1 UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank/id1 TMPL=ncbi_xreader_id1 -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/split/annot_piece.cpp: In member function 'std::multiset::iterator ncbi::objects::SIdAnnotPieces::Erase(std::multiset::iterator)': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/split/annot_piece.cpp:221:35: note: parameter passing for argument of type 'std::multiset::iterator' {aka 'std::_Rb_tree, std::less, std::allocator >::const_iterator'} changed in GCC 7.1 - 221 | SIdAnnotPieces::TPieces::iterator SIdAnnotPieces::Erase(TPieces::iterator it) - | ^~~~~~~~~~~~~~ +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ncbi::objects::CSeq_id_Handle}; _Tp = ncbi::objects::CSeq_id_Handle; _Alloc = std::allocator]': +/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 In file included from /usr/include/c++/10/vector:72, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, @@ -27707,42 +27741,13 @@ from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbicntr.hpp:40, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiargs.hpp:84, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbi_param.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp:32: -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const ncbi::objects::CSeq_id_Handle&}; _Tp = ncbi::objects::CSeq_id_Handle; _Alloc = std::allocator]': + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/data_loaders/genbank/reader.hpp:32, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/data_loaders/genbank/cache/reader_cache.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp:31: +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ncbi::objects::CSeq_id_Handle}; _Tp = ncbi::objects::CSeq_id_Handle; _Alloc = std::allocator]': /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ -are/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/split/id_range.cpp -o id_range.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/split/object_splitinfo.cpp -o object_splitinfo.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/split/asn_sizer.cpp -o asn_sizer.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/split/annot_piece.cpp -o annot_piece.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/split/chunk_info.cpp -o chunk_info.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/split/size.cpp -o size.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ncbi::objects::CSeq_id_Handle}; _Tp = ncbi::objects::CSeq_id_Handle; _Alloc = std::allocator]': -/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 -E_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/autodef_feature_clause.cpp -o autodef_feature_clause.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/autodef_options.cpp -o autodef_options.o -/bin/rm -f libxobjutil.so .libxobjutil.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libxobjutil.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC weight.o sequence.o feature.o indexer.o seqtitle.o create_defline.o obj_sniff.o seq_loc_util.o seq_align_util.o seq_trimmer.o bioseqgaps_ci.o objutil.o feature_edit.o autodef.o autodef_feature_clause_base.o autodef_source_desc.o autodef_available_modifier.o autodef_mod_combo.o autodef_source_group.o autodef_feature_clause.o autodef_options.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lxobjmgr -lseqset -lseq -lpub -lbiblio -lgeneral -lxser -lsequtil -lxutil -lxncbi -ldl -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjutil.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -/bin/ln -f libxobjutil.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libxobjutil.so -/bin/ln -f .xobjutil.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.xobjutil.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objmgr/util' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objmgr/util' -cd objtools/data_loaders/genbank/id2/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=ncbi_xreader_id2 UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank/id2 TMPL=ncbi_xreader_id2 -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. /usr/include/c++/10/bits/vector.tcc: In member function 'bool ncbi::objects::CId1Reader::LoadGiSeq_ids(ncbi::objects::CReaderRequestResult&, const ncbi::objects::CSeq_id_Handle&)': /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); @@ -27765,11 +27770,25 @@ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/autodef_mod_combo.cpp: In member function 'bool ncbi::objects::CAutoDefModifierCombo::AddQual(bool, int, bool)': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/autodef_mod_combo.cpp:1034:10: warning: unused variable 'added' [-Wunused-variable] + 1034 | bool added = false, rval = false; + | ^~~~~ +/usr/include/c++/10/bits/vector.tcc: In member function 'bool ncbi::objects::CCacheReader::ReadSeq_ids(ncbi::objects::CReaderRequestResult&, const string&, ncbi::objects::CLoadLockSeqIds&)': +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/autodef.cpp -o autodef.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/autodef_feature_clause_base.cpp -o autodef_feature_clause_base.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/autodef_source_desc.cpp -o autodef_source_desc.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/autodef_available_modifier.cpp -o autodef_available_modifier.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/autodef_mod_combo.cpp -o autodef_mod_combo.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/autodef_source_group.cpp -o autodef_source_group.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILmake[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp -o reader_id1.o /bin/rm -f libncbi_xreader_id1.a .libncbi_xreader_id1.a.stamp -/bin/rm -f libncbi_xreader_id1.so .libncbi_xreader_id1.so.stamp ar cr libncbi_xreader_id1.a reader_id1.o +/bin/rm -f libncbi_xreader_id1.so .libncbi_xreader_id1.so.stamp /usr/bin/g++ -std=gnu++14 -shared -o libncbi_xreader_id1.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC reader_id1.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lncbi_xreader -lid2 -lxobjmgr -lid1 -lseqedit -lseqsplit -lsubmit -lgenome_collection -lseqset -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxser -lsequtil -lxconnect -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id1.a /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib /bin/ln -f libncbi_xreader_id1.a /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libncbi_xreader_id1.a @@ -27779,105 +27798,43 @@ /bin/ln -f .ncbi_xreader_id1.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.ncbi_xreader_id1.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' -cd objtools/blast/blastdb_format/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=blastdb_format UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/blastdb_format TMPL=blastdb_format -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/split/split_exceptions.cpp -o split_exceptions.o -/bin/rm -f libid2_split.so .libid2_split.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libid2_split.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC blob_splitter.o blob_splitter_params.o split_blob.o blob_splitter_impl.o blob_splitter_parser.o blob_splitter_maker.o id_range.o object_splitinfo.o asn_sizer.o annot_piece.o chunk_info.o size.o split_exceptions.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lxobjmgr -lseqsplit -lseqset -lseq -lgeneral -lxser -lxcompress -lxncbi -ldl -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2_split.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -/bin/ln -f libid2_split.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libid2_split.so -/bin/ln -f .id2_split.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.id2_split.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objmgr/split' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objmgr/split' -cd objtools/data_loaders/blastdb/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=ncbi_xloader_blastdb UNIX_PROJ="" sources= configurables=configurables.null +cd objtools/data_loaders/blastdb/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=ncbi_xloader_blastdb UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:35: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:85:69: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] - 85 | CSeqFormatterConfig config = CSeqFormatterConfig()); - | ^ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here - 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:96:85: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] - 96 | void DumpAll(CSeqDB& blastdb, CSeqFormatterConfig config = CSeqFormatterConfig()); - | ^ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here - 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:85:68: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] - 85 | CSeqFormatterConfig config = CSeqFormatterConfig()); - | ^ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here - 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:96:84: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] - 96 | void DumpAll(CSeqDB& blastdb, CSeqFormatterConfig config = CSeqFormatterConfig()); - | ^ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here - 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:49:74: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] - 49 | CSeqFormatterConfig config /* = CSeqFormatterConfig() */) - | ^ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:35: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here - 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:270:72: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] - 270 | void CSeqFormatter::DumpAll(CSeqDB& blastdb, CSeqFormatterConfig config) - | ^ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:35: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here - 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { - | ^~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:72, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/blastdb/cached_sequence.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp:35: -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair >&}; _Tp = std::pair >; _Alloc = std::allocator > >]': -/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector > >::iterator' changed in GCC 7.1 - 426 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:67, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/blastdb/cached_sequence.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp:35: -/usr/include/c++/10/bits/stl_vector.h: In member function 'void ncbi::objects::CCachedSequence::x_AddSplitSeqChunk(ncbi::objects::CCachedSequence::TCTSE_Chunk_InfoVector&, const ncbi::objects::CSeq_id_Handle&, ncbi::TSeqPos, ncbi::TSeqPos)': -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >*, std::vector > > >' changed in GCC 7.1 - 1198 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/cache' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp -o reader_cache.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp -o writer_cache.o +/bin/rm -f libncbi_xreader_cache.a .libncbi_xreader_cache.a.stamp +ar cr libncbi_xreader_cache.a reader_cache.o writer_cache.o +/bin/rm -f libncbi_xreader_cache.so .libncbi_xreader_cache.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libncbi_xreader_cache.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC reader_cache.o writer_cache.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lncbi_xreader -lid2 -lxobjmgr -lid1 -lseqedit -lseqsplit -lsubmit -lgenome_collection -lseqset -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxser -lsequtil -lxconnect -lxutil -lxncbi -ldl -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_cache.a /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib +/bin/ln -f libncbi_xreader_cache.a /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libncbi_xreader_cache.a +/bin/ln -f .ncbi_xreader_cache-static.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.ncbi_xreader_cache-static.dep +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_cache.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib +/bin/ln -f libncbi_xreader_cache.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libncbi_xreader_cache.so +/bin/ln -f .ncbi_xreader_cache.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.ncbi_xreader_cache.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/cache' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/cache' +cd objtools/blast/seqdb_writer/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=writedb UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer TMPL=writedb -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp -o reader_id2.o /bin/rm -f libncbi_xreader_id2.a .libncbi_xreader_id2.a.stamp @@ -27892,158 +27849,20 @@ /bin/ln -f .ncbi_xreader_id2.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.ncbi_xreader_id2.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' -cd objtools/edit/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=edit UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/edit' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/edit' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/edit' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/edit' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/edit' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit TMPL=edit -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp -o bdbloader.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp -o cached_sequence.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp -o local_blastdb_adapter.o -/bin/rm -f libncbi_xloader_blastdb.so .libncbi_xloader_blastdb.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libncbi_xloader_blastdb.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC bdbloader.o cached_sequence.o local_blastdb_adapter.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lseqdb -lxobjmgr -lseqset -lseq -lxncbi -llmdb -lpthread -ldl -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_blastdb.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -/bin/ln -f libncbi_xloader_blastdb.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libncbi_xloader_blastdb.so -/bin/ln -f .ncbi_xloader_blastdb.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.ncbi_xloader_blastdb.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' -cd objtools/blast/seqdb_writer/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=writedb UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer TMPL=writedb -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/promote.cpp: In member function 'void ncbi::objects::edit::CPromote::x_PromoteCdregion(ncbi::objects::CSeq_feat&, ncbi::objects::edit::CPromote::TRnaMap*) const': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/promote.cpp:228:68: warning: 'static void ncbi::objects::CCdregion_translate::TranslateCdregion(std::string&, const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&, bool, bool, bool*, ncbi::objects::CCdregion_translate::ETranslationLengthProblemOptions)' is deprecated [-Wdeprecated-declarations] - 228 | remove_trailingX); - | ^ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/promote.cpp:52: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objmgr/util/sequence.hpp:936:17: note: declared here - 936 | static void TranslateCdregion(string& prot, - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp: In member function 'void ncbi::objects::edit::{anonymous}::CSeqdescSortMap::Init()': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp:172:39: warning: array subscript has type 'char' [-Wchar-subscripts] - 172 | while (descr_insert_order[index] != 0) - | ^~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp:174:40: warning: array subscript has type 'char' [-Wchar-subscripts] - 174 | if (descr_insert_order[index] >= size()) - | ^~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp:175:47: warning: array subscript has type 'char' [-Wchar-subscripts] - 175 | resize(descr_insert_order[index], kMax_Char); - | ^~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp:176:39: warning: array subscript has type 'char' [-Wchar-subscripts] - 176 | at(descr_insert_order[index]) = index; - | ^~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp: In function 'void ncbi::objects::edit::ConvertRawToDeltaByNs(ncbi::objects::CSeq_inst&, size_t, int, size_t, int, bool, int, int, int)': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp:1823:71: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int' [-Wsign-compare] - 1823 | if (n_len >= min_unknown && (max_unknown < 0 || n_len <= max_unknown)) { - | ~~~~~~^~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp:1825:74: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int' [-Wsign-compare] - 1825 | } else if (n_len >= min_known && (max_known < 0 || n_len <= max_known)) { - | ~~~~~~^~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp:1848:63: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int' [-Wsign-compare] - 1848 | if (n_len >= min_unknown && (max_unknown < 0 || n_len <= max_unknown)) { - | ~~~~~~^~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp:1850:66: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int' [-Wsign-compare] - 1850 | } else if (n_len >= min_known && (max_known < 0 || n_len <= max_known)) { - | ~~~~~~^~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp: In function 'void ncbi::objects::edit::TrimSeqData(ncbi::objects::CBioseq_Handle, ncbi::CRef, const TCuts&)': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp:2431:16: warning: enumeration value 'eSeqSubMap' not handled in switch [-Wswitch] - 2431 | switch (seqmap_ci.GetType()) { - | ^ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp:2431:16: warning: enumeration value 'eSeqRef' not handled in switch [-Wswitch] -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp:2431:16: warning: enumeration value 'eSeqEnd' not handled in switch [-Wswitch] -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp:2431:16: warning: enumeration value 'eSeqChunk' not handled in switch [-Wswitch] -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp:2431:16: warning: enumeration value 'eSeqLiteral' not handled in switch [-Wswitch] -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp: In function 'bool ncbi::objects::edit::s_FindSegment(const ncbi::objects::CDense_seg&, ncbi::objects::CDense_seg_Base::TDim, ncbi::TSeqPos, ncbi::objects::CDense_seg_Base::TNumseg&, ncbi::TSeqPos&)': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp:2787:21: warning: comparison of integer expressions of different signedness: 'ncbi::TSeqPos' {aka 'unsigned int'} and 'ncbi::TSignedSeqPos' {aka 'int'} [-Wsign-compare] - 2787 | if (pos >= start && pos < start + len) { - | ~~~~^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp:2787:39: warning: comparison of integer expressions of different signedness: 'ncbi::TSeqPos' {aka 'unsigned int'} and 'ncbi::TSignedSeqPos' {aka 'int'} [-Wsign-compare] - 2787 | if (pos >= start && pos < start + len) { - | ~~~~^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp: In function 'void ncbi::objects::edit::TrimSeqAlign(ncbi::objects::CBioseq_Handle, ncbi::CRef, const TCuts&)': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp:2991:32: warning: comparison of integer expressions of different signedness: 'ncbi::TSignedSeqPos' {aka 'int'} and 'ncbi::TSeqPos' {aka 'unsigned int'} [-Wsign-compare] - 2991 | else if (seg_start < cut_from) { - | ~~~~~~~~~~^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp:2994:32: warning: comparison of integer expressions of different signedness: 'ncbi::TSignedSeqPos' {aka 'int'} and 'ncbi::TSeqPos' {aka 'unsigned int'} [-Wsign-compare] - 2994 | else if (seg_start >= cut_from && - | ~~~~~~~~~~^~~~~~~~~~~ -In file included from /usr/include/c++/10/map:60, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/promote.cpp:32: -/usr/include/c++/10/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = ncbi::objects::CBioseq_Handle; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': -/usr/include/c++/10/bits/stl_tree.h:2458:7: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' changed in GCC 7.1 - 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/map:61, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/promote.cpp:32: -/usr/include/c++/10/bits/stl_map.h: In member function 'void ncbi::objects::edit::CPromote::x_CopyCdregionToRNA(const ncbi::objects::CSeq_feat&, ncbi::objects::CBioseq_Handle&, ncbi::objects::edit::CPromote::TRnaMap*) const': -/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' changed in GCC 7.1 - 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 502 | std::tuple(__k), - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 503 | std::tuple<>()); - | ~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_map.h: In member function 'void ncbi::objects::edit::CPromote::x_PromoteFeatures(ncbi::objects::CSeq_annot&) const': -/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' changed in GCC 7.1 - 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 502 | std::tuple(__k), - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 503 | std::tuple<>()); - | ~~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/blastdb_format/seq_writer.cpp -o seq_writer.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp -o blastdb_dataextract.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp -o blastdb_formatter.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/blastdb_format/seq_formatter.cpp -o seq_formatter.o -/bin/rm -f libblastdb_format.so .libblastdb_format.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libblastdb_format.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC seq_writer.o blastdb_dataextract.o blastdb_formatter.o seq_formatter.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lseqdb -lxobjutil -lxobjmgr -lseq -lxser -lsequtil -lxutil -lxncbi -ldl -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastdb_format.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -/bin/ln -f libblastdb_format.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libblastdb_format.so -/bin/ln -f .blastdb_format.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.blastdb_format.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' -cd objtools/blast/gene_info_reader/demo/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=gene_info_reader LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/demo' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/demo' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/demo' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/demo' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/demo' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/gene_info_reader/demo TMPL=gene_info_reader -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +cd objtools/blast/services/unit_test/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=blast_services_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/services/unit_test' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/services/unit_test' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/services/unit_test' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/services/unit_test' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/services/unit_test' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/services/unit_test TMPL=blast_services_unit_test -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp:38: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/services/unit_test/blast_services_test.cpp:66: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -28134,12 +27953,14 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp:38: +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/services/unit_test/blast_services_test.cpp:66: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp:38: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/services/unit_test/blast_services_test.cpp:66: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -28155,6 +27976,52 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/vector:72, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/blastdb/cached_sequence.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp:35: +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair >&}; _Tp = std::pair >; _Alloc = std::allocator > >]': +/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector > >::iterator' changed in GCC 7.1 + 426 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/vector:67, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/blastdb/cached_sequence.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp:35: +/usr/include/c++/10/bits/stl_vector.h: In member function 'void ncbi::objects::CCachedSequence::x_AddSplitSeqChunk(ncbi::objects::CCachedSequence::TCTSE_Chunk_InfoVector&, const ncbi::objects::CSeq_id_Handle&, ncbi::TSeqPos, ncbi::TSeqPos)': +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >*, std::vector > > >' changed in GCC 7.1 + 1198 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, + from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, + from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, + from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, + from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, + from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, + from /usr/include/boost/shared_ptr.hpp:17, + from /usr/include/boost/test/tools/assertion_result.hpp:21, + from /usr/include/boost/test/tools/old/impl.hpp:20, + from /usr/include/boost/test/test_tools.hpp:46, + from /usr/include/boost/test/unit_test.hpp:18, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/services/unit_test/blast_services_test.cpp:66: +/usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' + 14 | BOOST_HEADER_DEPRECATED( "" ) + | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/bits/stl_algo.h:61, from /usr/include/c++/10/algorithm:62, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistl.hpp:180, @@ -28209,88 +28076,36 @@ /usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1891 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/demo' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -DNCBI_APP_BUILT_AS=gene_info_reader /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp -o gene_info_reader_app.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie gene_info_reader_app.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lgene_info -lxobjutil -lseqdb -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -ldl -llmdb -lpthread -ldl -lm -lpthread -o gene_info_reader -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f gene_info_reader /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin -/bin/ln -f gene_info_reader /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/gene_info_reader -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/demo' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/demo' -cd objtools/blast/seqdb_reader/demo/ && NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=seqdb_demo LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/demo TMPL=seqdb_demo -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/writedb.cpp -o writedb.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp -o writedb_impl.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp -o writedb_volume.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp -o writedb_files.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp -o writedb_isam.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp -o wrimake[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/edit' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/gene_utils.cpp -o gene_utils.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp -o seq_entry_edit.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/promote.cpp -o promote.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/autodef_with_tax.cpp -o autodef_with_tax.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/field_handler.cpp -o field_handler.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/apply_object.cpp -o apply_object.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -WeIn file included from /usr/include/c++/10/algorithm:62, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistl.hpp:180, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbictype.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistre.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbi_stack.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp:33: -/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_less_iter]': -/usr/include/c++/10/bits/stl_algo.h:1819:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1819 | __unguarded_linear_insert(_RandomAccessIterator __last, - | ^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/bits/stl_algo.h:61, - from /usr/include/c++/10/algorithm:62, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistl.hpp:180, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbictype.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistre.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbi_stack.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp:33: -/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = ncbi::CWriteDB_IsamIndex::SIdOid; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': -/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, - | ^~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -DNCBI_APP_BUILT_AS=seqdb_demo /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp -o seqdb_demo.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie seqdb_demo.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lseqdb -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -ldl -ldl -lm -lpthread -o seqdb_demo -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_demo /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin -/bin/ln -f seqdb_demo /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/seqdb_demo -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' -cd objtools/blast/seqdb_reader/test/ && NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=seqdb_perf LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/test' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/test' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/test' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/test' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/test' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/test TMPL=seqdb_perf -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp -o wrimake[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp -o bdbloader.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp -o cached_sequence.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp -o local_blastdb_adapter.o +/bin/rm -f libncbi_xloader_blastdb.so .libncbi_xloader_blastdb.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libncbi_xloader_blastdb.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC bdbloader.o cached_sequence.o local_blastdb_adapter.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lseqdb -lxobjmgr -lseqset -lseq -lxncbi -llmdb -lpthread -ldl -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_blastdb.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib +/bin/ln -f libncbi_xloader_blastdb.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libncbi_xloader_blastdb.so +/bin/ln -f .ncbi_xloader_blastdb.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.ncbi_xloader_blastdb.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' +cd objtools/data_loaders/genbank/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=ncbi_xloader_genbank UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xloader_genbank -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank/gbloader.cpp:66: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -28381,12 +28196,12 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:35: +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank/gbloader.cpp:66: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank/gbloader.cpp:66: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -28402,156 +28217,8 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:72, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp:33: -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const ncbi::CWriteDB_IsamIndex::SIdOid&}; _Tp = ncbi::CWriteDB_IsamIndex::SIdOid; _Alloc = std::allocator]': -/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 426 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:67, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp:33: -/usr/include/c++/10/bits/stl_vector.h: In member function 'void ncbi::CWriteDB_IsamIndex::x_AddTraceIds(int, const TIdList&)': -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1198 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_vector.h: In member function 'void ncbi::CWriteDB_IsamIndex::x_AddGis(int, const TIdList&)': -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1198 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_vector.h: In member function 'void ncbi::CWriteDB_IsamIndex::AddPig(int, int)': -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1198 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In file included from /usr/include/c++/10/algorithm:62, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistl.hpp:180, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbictype.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistre.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbi_stack.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp:33: -/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': -/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1839 | __insertion_sort(_RandomAccessIterator __first, - | ^~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': -/usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1662 | __heap_select(_RandomAccessIterator __first, - | ^~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': -/usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 79 | __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, - | ^~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': -/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1945 | __introsort_loop(_RandomAccessIterator __first, - | ^~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h:1924:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1924 | std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 1925 | __comp); - | ~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:1924:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:1937:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1937 | std::__heap_select(__first, __middle, __last, __comp); - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h: In member function 'void ncbi::CWriteDB_IsamIndex::x_FlushNumericIndex()': -/usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1974 | std::__introsort_loop(__first, __last, - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ - 1975 | std::__lg(__last - __first) * 2, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 1976 | __comp); - | ~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1891 | std::__insertion_sort(__first, __last, __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp: In member function 'void CSeqDBPerfApp::x_UpdateMemoryUsage(int)': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:114:59: warning: 'bool ncbi::GetMemoryUsage(size_t*, size_t*, size_t*)' is deprecated [-Wdeprecated-declarations] - 114 | if (GetMemoryUsage(&mu.total, &mu.resident, &mu.shared)) { - | ^ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:36: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbi_system.hpp:511:13: note: declared here - 511 | extern bool GetMemoryUsage(size_t* total, size_t* resident, size_t* shared); - | ^~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp: In member function 'int CSeqDBPerfApp::x_ScanDatabase()': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:153:31: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'int'} and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] - 153 | for (ssize_t i = 0; i < oids2iterate.size(); i++) { - | ~~^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/seqid_guesser.cpp: In constructor 'ncbi::objects::edit::CSeqIdGuesser::CSeqIdGuesser(ncbi::objects::CSeq_entry_Handle)': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/seqid_guesser.cpp:92:91: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] - 92 | size_t pos = NStr::Find(tag_str, "/", 0, string::npos, NStr::eLast); - | ^ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objects/general/Dbtag_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objects/general/Dbtag.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/seqid_guesser.cpp:31: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:5308:11: note: declared here - 5308 | SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, - | ^~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/seqid_guesser.cpp: In static member function 'static std::vector > ncbi::objects::edit::CSeqIdGuesser::GetIdStrings(ncbi::objects::CBioseq_Handle)': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/seqid_guesser.cpp:171:87: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] - 171 | size_t pos = NStr::Find(tag_str, "/", 0, string::npos, NStr::eLast); - | ^ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objects/general/Dbtag_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objects/general/Dbtag.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/seqid_guesser.cpp:31: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:5308:11: note: declared here - 5308 | SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, - | ^~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/test' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -DNCBI_APP_BUILT_AS=seqdb_perf /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp -o seqdb_perf.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie seqdb_perf.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lseqdb -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -ldl -llmdb -lpthread -ldl -lm -lpthread -o seqdb_perf -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_perf /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin -/bin/ln -f seqdb_perf /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/seqdb_perf -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/test' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/test' -cd objtools/blast/services/unit_test/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=blast_services_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/services/unit_test' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/services/unit_test' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/services/unit_test' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/services/unit_test' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/services/unit_test' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/services/unit_test TMPL=blast_services_unit_test -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/services/unit_test/blast_services_test.cpp:66: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank/gbnative.cpp:63: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -28642,14 +28309,12 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/services/unit_test/blast_services_test.cpp:66: +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank/gbnative.cpp:63: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/services/unit_test/blast_services_test.cpp:66: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank/gbnative.cpp:63: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -28665,20 +28330,66 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ +E_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/autodef_feature_clause.cpp -o autodef_feature_clause.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objmgr/util/autodef_options.cpp -o autodef_options.o +/bin/rm -f libxobjutil.so .libxobjutil.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libxobjutil.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC weight.o sequence.o feature.o indexer.o seqtitle.o create_defline.o obj_sniff.o seq_loc_util.o seq_align_util.o seq_trimmer.o bioseqgaps_ci.o objutil.o feature_edit.o autodef.o autodef_feature_clause_base.o autodef_source_desc.o autodef_available_modifier.o autodef_mod_combo.o autodef_source_group.o autodef_feature_clause.o autodef_options.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lxobjmgr -lseqset -lseq -lpub -lbiblio -lgeneral -lxser -lsequtil -lxutil -lxncbi -ldl -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjutil.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib +/bin/ln -f libxobjutil.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libxobjutil.so +/bin/ln -f .xobjutil.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.xobjutil.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objmgr/util' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objmgr/util' +cd objtools/data_loaders/blastdb/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=ncbi_xloader_blastdb_rmt UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb_rmt -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +In file included from /usr/include/c++/10/algorithm:62, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistl.hpp:180, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbictype.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistre.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbi_stack.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp:33: +/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_less_iter]': +/usr/include/c++/10/bits/stl_algo.h:1819:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1819 | __unguarded_linear_insert(_RandomAccessIterator __last, + | ^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/bits/stl_algo.h:61, + from /usr/include/c++/10/algorithm:62, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistl.hpp:180, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbictype.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistre.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbi_stack.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp:33: +/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = ncbi::CWriteDB_IsamIndex::SIdOid; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': +/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, + | ^~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objects/general/Dbtag_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objects/general/Dbtag.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/seqid_guesser.cpp:31: -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const ncbi::objects::CBioseq_Handle&}; _Tp = ncbi::objects::CBioseq_Handle; _Alloc = std::allocator]': -/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp:33: +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const ncbi::CWriteDB_IsamIndex::SIdOid&}; _Tp = ncbi::CWriteDB_IsamIndex::SIdOid; _Alloc = std::allocator]': +/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, @@ -28687,23 +28398,99 @@ from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objects/general/Dbtag_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objects/general/Dbtag.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/seqid_guesser.cpp:31: -/usr/include/c++/10/bits/stl_vector.h: In member function 'std::vector ncbi::objects::edit::CSeqIdGuesser::FindMatches(ncbi::CRef)': -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp:33: +/usr/include/c++/10/bits/stl_vector.h: In member function 'void ncbi::CWriteDB_IsamIndex::x_AddTraceIds(int, const TIdList&)': +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_vector.h: In member function 'void ncbi::CWriteDB_IsamIndex::x_AddGis(int, const TIdList&)': +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/dblink_field.cpp: In static member function 'static ncbi::objects::edit::CDBLinkField::EDBLinkFieldType ncbi::objects::edit::CDBLinkField::GetTypeForLabel(std::string)': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/dblink_field.cpp:283:17: warning: variable 'normal' set but not used [-Wunused-but-set-variable] - 283 | CTempString normal = GetNormalizedDBLinkFieldName(label); - | ^~~~~~ +/usr/include/c++/10/bits/stl_vector.h: In member function 'void ncbi::CWriteDB_IsamIndex::AddPig(int, int)': +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1198 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +In file included from /usr/include/c++/10/algorithm:62, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistl.hpp:180, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbictype.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistre.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbi_stack.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp:33: +/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': +/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1839 | __insertion_sort(_RandomAccessIterator __first, + | ^~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': +/usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1662 | __heap_select(_RandomAccessIterator __first, + | ^~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': +/usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 79 | __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, + | ^~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': +/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1945 | __introsort_loop(_RandomAccessIterator __first, + | ^~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h:1924:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1924 | std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 1925 | __comp); + | ~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:1924:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:1937:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1937 | std::__heap_select(__first, __middle, __last, __comp); + | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h: In member function 'void ncbi::CWriteDB_IsamIndex::x_FlushNumericIndex()': +/usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1974 | std::__introsort_loop(__first, __last, + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ + 1975 | std::__lg(__last - __first) * 2, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 1976 | __comp); + | ~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1891 | std::__insertion_sort(__first, __last, __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/services/unit_test' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blast_services_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/services/unit_test/blast_services_test.cpp -o blast_services_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie blast_services_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -ltest_boost -lblast_services -lxnetblastcli -lxnetblast -lseqdb -lblastdb -lscoremat -lxconnect -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -ldl -llmdb -lpthread -ldl -lm -lpthread -o blast_services_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_services_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin +/bin/ln -f blast_services_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/blast_services_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/services/unit_test' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/services/unit_test' +cd objtools/edit/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=edit UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/edit' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/edit' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/edit' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/edit' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/edit' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit TMPL=edit -w -j4 --jobserver-auth=7,8 all tedb_gimask.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp -o writedb_convert.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_general.cpp -o writedb_general.o @@ -28711,22 +28498,72 @@ /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/mask_info_registry.cpp -o mask_info_registry.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/taxid_set.cpp -o taxid_set.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/build_db.cpp -o build_db.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, - from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, - from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, - from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, - from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, - from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, - from /usr/include/boost/shared_ptr.hpp:17, - from /usr/include/boost/test/tools/assertion_result.hpp:21, - from /usr/include/boost/test/tools/old/impl.hpp:20, - from /usr/include/boost/test/test_tools.hpp:46, - from /usr/include/boost/test/unit_test.hpp:18, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/services/unit_test/blast_services_test.cpp:66: -/usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' - 14 | BOOST_HEADER_DEPRECATED( "" ) - | ^~~~~~~~~~~~~~~~~~~~~~~ +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2make[5]: warning: -j4 forced in submake: resetting jobserver mode. +In file included from /usr/include/c++/10/bits/stl_algo.h:61, + from /usr/include/c++/10/algorithm:62, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistl.hpp:180, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiargs.hpp:84, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbi_param.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank/gbnative.cpp:33: +/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = ncbi::objects::CSeq_id_Handle; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': +/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, + | ^~~~~~~~~~~~~ +In file included from /usr/include/c++/10/algorithm:62, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistl.hpp:180, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiargs.hpp:84, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbi_param.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank/gbnative.cpp:33: +/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]': +/usr/include/c++/10/bits/stl_algo.h:1819:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1819 | __unguarded_linear_insert(_RandomAccessIterator __last, + | ^~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': +/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1839 | __insertion_sort(_RandomAccessIterator __first, + | ^~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': +/usr/include/c++/10/bits/stl_algo.h:1881:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1881 | __final_insertion_sort(_RandomAccessIterator __first, + | ^~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:1881:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1891 | std::__insertion_sort(__first, __last, __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/vector:72, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiargs.hpp:84, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbi_param.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank/gbnative.cpp:33: +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const ncbi::objects::CSeq_id_Handle&}; _Tp = ncbi::objects::CSeq_id_Handle; _Alloc = std::allocator]': +/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 426 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/build_db.cpp: In constructor 'ncbi::CFastaBioseqSource::CFastaBioseqSource(ncbi::CNcbiIstream&, bool, bool, bool)': /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/build_db.cpp:709:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] 709 | int iflags = CFastaReader::fAllSeqIds | @@ -28756,240 +28593,7 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) | ^~~~~~~~~~ -rror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/string_constraint.cpp -o string_constraint.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/seqid_guesser.cpp -o seqid_guesser.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/dblink_field.cpp -o dblink_field.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/struc_comm_field.cpp -o struc_comm_field.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/text_desc_field.cpp -o text_desc_field.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/gb_block_field.cpp -o gb_block_field.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/re/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp: In member function 'void ncbi::CWriteDB_LMDB::x_CommitTransaction()': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp:295:42: warning: 'unsigned int ncbi::GetCpuCount()' is deprecated [-Wdeprecated-declarations] - 295 | unsigned int num_threads = GetCpuCount(); - | ^ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbifile.hpp:53, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp:35: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbi_system.hpp:479:14: note: declared here - 479 | unsigned int GetCpuCount(void) - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/link_cds_mrna.cpp: In function 'void ncbi::{anonymous}::xLinkCDSmRNAbyLabelAndLocation(ncbi::objects::CSeq_annot_Base::C_Data::TFtable&)': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/link_cds_mrna.cpp:135:13: warning: unused variable 'best_fit_size' [-Wunused-variable] - 135 | int best_fit_size = -1; - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/cds_fix.cpp: In function 'bool ncbi::objects::edit::AdjustForCDSPartials(const ncbi::objects::CSeq_feat&, ncbi::objects::CSeq_entry_Handle)': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/cds_fix.cpp:457:82: warning: 'bool ncbi::objects::edit::AdjustProteinMolInfoToMatchCDS(ncbi::objects::CMolInfo&, const ncbi::objects::CSeq_feat&)' is deprecated [-Wdeprecated-declarations] - 457 | any_change |= AdjustProteinMolInfoToMatchCDS((*it)->SetMolinfo(), cds); - | ^ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/cds_fix.cpp:366:6: note: declared here - 366 | bool AdjustProteinMolInfoToMatchCDS(CMolInfo& molinfo, const CSeq_feat& cds) - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/cds_fix.cpp:463:75: warning: 'bool ncbi::objects::edit::AdjustProteinMolInfoToMatchCDS(ncbi::objects::CMolInfo&, const ncbi::objects::CSeq_feat&)' is deprecated [-Wdeprecated-declarations] - 463 | AdjustProteinMolInfoToMatchCDS(new_molinfo_desc->SetMolinfo(), cds); - | ^ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/cds_fix.cpp:366:6: note: declared here - 366 | bool AdjustProteinMolInfoToMatchCDS(CMolInfo& molinfo, const CSeq_feat& cds) - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/services/unit_test' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blast_services_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/services/unit_test/blast_services_test.cpp -o blast_services_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie blast_services_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -ltest_boost -lblast_services -lxnetblastcli -lxnetblast -lseqdb -lblastdb -lscoremat -lxconnect -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -ldl -llmdb -lpthread -ldl -lm -lpthread -o blast_services_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_services_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin -/bin/ln -f blast_services_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/blast_services_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/services/unit_test' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/services/unit_test' -cd objtools/seqmasks_io/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=seqmasks_io UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/seqmasks_io' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/seqmasks_io' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/seqmasks_io' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/seqmasks_io' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/seqmasks_io' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/seqmasks_io TMPL=seqmasks_io -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. - -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/multisource_util.cpp -o multisource_util.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/criteria.cpp -o criteria.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp -o writedb_lmdb.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/seqidlist_writer.cpp -o seqidlist_writer.o -/bin/rm -f libwritedb.so .libwritedb.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libwritedb.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC writedb.o writedb_impl.o writedb_volume.o writedb_files.o writedb_isam.o writedb_gimask.o writedb_convert.o writedb_general.o writedb_column.o mask_info_registry.o taxid_set.o build_db.o multisource_util.o criteria.o writedb_lmdb.o seqidlist_writer.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lseqdb -lxobjread -lxobjmgr -lblastdb -lseqset -lseq -lgeneral -lxser -lsequtil -lxutil -lxncbi -ldl -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libwritedb.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -/bin/ln -f libwritedb.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libwritedb.so -/bin/ln -f .writedb.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.writedb.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer' -cd algo/blast/dbindex/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xalgoblastdbindex UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/dbindex' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/dbindex' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/dbindex' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/dbindex' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/dbindex' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/dbindex TMPL=xalgoblastdbindex -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp:36: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] - 94 | objects::CFastaReader::fAllSeqIds | - | ^~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp:36: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here - 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) - | ^~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp:36: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] - 94 | objects::CFastaReader::fAllSeqIds | - | ^~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp:36: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here - 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/mail_report.cpp: In function 'void ncbi::objects::edit::MakeMailReportPostReport(ncbi::objects::CSeq_table&, ncbi::objects::CScope&)': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/mail_report.cpp:103:13: warning: unused variable 'taxid' [-Wunused-variable] - 103 | int taxid = 0; - | ^~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp:52:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] - 52 | objects::CFastaReader::fAllSeqIds; - | ^~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp:35: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here - 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp:52:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] - 52 | objects::CFastaReader::fAllSeqIds; - | ^~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp:35: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here - 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/dbindex/dbindex.cpp: In function 'const ncbi::blastdbindex::SIndexHeader ncbi::blastdbindex::ReadIndexHeader(void*) [with bool LEGACY = true]': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/dbindex/dbindex.cpp:306:19: warning: variable 'tmp' set but not used [-Wunused-but-set-variable] - 306 | unsigned long tmp; - | ^~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/seqmasks_io' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/seqmasks_io/mask_cmdline_args.cpp -o mask_cmdline_args.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp -o mask_bdb_reader.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp -o mask_fasta_reader.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/seqmasks_io/mask_writer.cpp -o mask_writer.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp -o mask_writer_fasta.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/seqmasks_io/mask_writer_int.cpp -o mask_writer_int.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/feattable_edit.cpp:51: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/edit/feattable_edit.hpp: In constructor 'ncbi::objects::edit::CFeatTableEdit::CFeatTableEdit(ncbi::objects::CSeq_annot&, const string&, unsigned int, unsigned int, ncbi::objects::IObjtoolsListener*)': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/edit/feattable_edit.hpp:187:24: warning: 'ncbi::objects::edit::CFeatTableEdit::mpMessageListener' will be initialized after [-Wreorder] - 187 | IObjtoolsListener* mpMessageListener; - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/edit/feattable_edit.hpp:92:18: warning: 'unsigned int ncbi::objects::edit::CFeatTableEdit::mNextFeatId' [-Wreorder] - 92 | unsigned int mNextFeatId = 1; - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/feattable_edit.cpp:114:1: warning: when initialized here [-Wreorder] - 114 | CFeatTableEdit::CFeatTableEdit( - | ^~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/feattable_edit.cpp:51: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/edit/feattable_edit.hpp:92:18: warning: 'ncbi::objects::edit::CFeatTableEdit::mNextFeatId' will be initialized after [-Wreorder] - 92 | unsigned int mNextFeatId = 1; - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/edit/feattable_edit.hpp:91:18: warning: 'unsigned int ncbi::objects::edit::CFeatTableEdit::mLocusTagNumber' [-Wreorder] - 91 | unsigned int mLocusTagNumber = 1; - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/feattable_edit.cpp:114:1: warning: when initialized here [-Wreorder] - 114 | CFeatTableEdit::CFeatTableEdit( - | ^~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/feattable_edit.cpp:51: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/edit/feattable_edit.hpp:91:18: warning: 'ncbi::objects::edit::CFeatTableEdit::mLocusTagNumber' will be initialized after [-Wreorder] - 91 | unsigned int mLocusTagNumber = 1; - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/edit/feattable_edit.hpp:90:12: warning: 'std::string ncbi::objects::edit::CFeatTableEdit::mLocusTagPrefix' [-Wreorder] - 90 | string mLocusTagPrefix; - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/feattable_edit.cpp:114:1: warning: when initialized here [-Wreorder] - 114 | CFeatTableEdit::CFeatTableEdit( - | ^~~~~~~~~~~~~~ -producible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/link_cds_mrna.cpp -o link_cds_mrna.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/cds_fix.cpp -o cds_fix.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/loc_edit.cpp -o loc_edit.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/mail_report.cpp -o mail_report.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/feattable_edit.cpp -o feattable_edit.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/gaps_edit.cpp -o gaps_edit.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/source_edit.cpp -o source_edit.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDIn file included from /usr/include/c++/10/vector:72, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbitime.hpp:65, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbi_system.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbifile.hpp:53, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/dbindex/dbindex_search.cpp:38: -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]': -/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 426 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/vector.tcc: In member function 'ncbi::CConstRef ncbi::blastdbindex::CSearch_Base::operator()() [with bool LEGACY = true; long unsigned int NHITS = 0; derived_t = ncbi::blastdbindex::CSearch]': -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/dbindex/dbindex_factory.cpp: In member function 'std::string ncbi::blastdbindex::CSubjectMap_Factory_Base::extractSeqVector(ncbi::blastdbindex::CSubjectMap_Factory_Base::TSeqData&)': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/dbindex/dbindex_factory.cpp:658:53: warning: 'std::string ncbi::objects::sequence::GetTitle(const ncbi::objects::CBioseq_Handle&, ncbi::objects::sequence::TGetTitleFlags)' is deprecated [-Wdeprecated-declarations] - 658 | string idstr = objects::sequence::GetTitle( bsh ); - | ^ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/dbindex/dbindex_factory.cpp:42: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objmgr/util/sequence.hpp:289:8: note: declared here - 289 | string GetTitle(const CBioseq_Handle& hnd, TGetTitleFlags flags = 0); - | ^~~~~~~~ -/usr/include/c++/10/bits/vector.tcc: In member function 'ncbi::CConstRef ncbi::blastdbindex::CSearch_Base::operator()() [with bool LEGACY = false; long unsigned int NHITS = 0; derived_t = ncbi::blastdbindex::CSearch]': -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/vector.tcc: In member function 'ncbi::CConstRef ncbi::blastdbindex::CSearch_Base::operator()() [with bool LEGACY = true; long unsigned int NHITS = 1; derived_t = ncbi::blastdbindex::CSearch]': -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/vector.tcc: In member function 'ncbi::CConstRef ncbi::blastdbindex::CSearch_Base::operator()() [with bool LEGACY = false; long unsigned int NHITS = 1; derived_t = ncbi::blastdbindex::CSearch]': -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/seqmasks_io/mask_writer_tab.cpp -o mask_writer_tab.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/seqmasks_io/mask_writer_seqloc.cpp -o mask_writer_seqloc.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.cpp -o mask_writer_blastdb_maskinfo.o -/bin/rm -f libseqmasks_io.so .libseqmasks_io.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libseqmasks_io.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC mask_cmdline_args.o mask_bdb_reader.o mask_fasta_reader.o mask_writer.o mask_writer_fasta.o mask_writer_int.o mask_writer_tab.o mask_writer_seqloc.o mask_writer_blastdb_maskinfo.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lseqdb -lxobjread -lxobjutil -lxobjmgr -lblastdb -lseqset -lseq -lxser -lxncbi -llmdb -lpthread -ldl -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqmasks_io.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -/bin/ln -f libseqmasks_io.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libseqmasks_io.so -/bin/ln -f .seqmasks_io.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.seqmasks_io.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/seqmasks_io' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/seqmasks_io' -cd objtools/alnmgr/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=alnmgr UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/alnmgr' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/alnmgr' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/alnmgr' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/alnmgr' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/alnmgr' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/alnmgr TMPL=alnmgr -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -In file included from /usr/include/c++/10/bits/stl_algobase.h:71, - from /usr/include/c++/10/algorithm:61, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistl.hpp:180, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objects/general/Object_id_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objects/general/Object_id.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/feattable_edit.cpp:35: -/usr/include/c++/10/bits/predefined_ops.h: In function 'constexpr bool __gnu_cxx::__ops::_Iter_comp_iter<_Compare>::operator()(_Iterator1, _Iterator2) [with _Iterator1 = __gnu_cxx::__normal_iterator >; _Iterator2 = __gnu_cxx::__normal_iterator >; _Compare = bool (*)(const ncbi::objects::CSeq_id_Handle&, ncbi::objects::CSeq_id_Handle)]': -/usr/include/c++/10/bits/predefined_ops.h:155:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 155 | operator()(_Iterator1 __it1, _Iterator2 __it2) - | ^~~~~~~~ -/usr/include/c++/10/bits/predefined_ops.h:155:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 -In file included from /usr/include/c++/10/vector:72, +In file included from /usr/include/c++/10/vector:67, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, @@ -28997,106 +28601,36 @@ from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objects/general/Object_id_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objects/general/Object_id.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/feattable_edit.cpp:35: -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const ncbi::objects::CSeq_id_Handle&}; _Tp = ncbi::objects::CSeq_id_Handle; _Alloc = std::allocator]': -/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 426 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 -In file included from /usr/include/c++/10/algorithm:62, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistl.hpp:180, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objects/general/Object_id_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objects/general/Object_id.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/feattable_edit.cpp:35: -/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]': -/usr/include/c++/10/bits/stl_algo.h:1819:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1819 | __unguarded_linear_insert(_RandomAccessIterator __last, - | ^~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': -/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1839 | __insertion_sort(_RandomAccessIterator __first, - | ^~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/rna_edit.cpp: In member function 'bool ncbi::objects::edit::CFindITSParser::IsLengthTooLarge(const string&, int, int, const std::vector&, const std::vector&, const std::vector&, int)': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/rna_edit.cpp:261:31: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] - 261 | for (int j = i + 1; j < spans.size(); j++) - | ~~^~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': -/usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 79 | __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, - | ^~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h:84:14: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 84 | if (__comp(__b, __c)) - | ~~~~~~^~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:86:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 86 | else if (__comp(__a, __c)) - | ~~~~~~^~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:91:22: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 91 | else if (__comp(__a, __c)) - | ~~~~~~^~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:93:22: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 93 | else if (__comp(__b, __c)) - | ~~~~~~^~~~~~~~~~ -In file included from /usr/include/c++/10/bits/stl_algo.h:61, - from /usr/include/c++/10/algorithm:62, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistl.hpp:180, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objects/general/Object_id_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objects/general/Object_id.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/feattable_edit.cpp:35: -/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = ncbi::objects::CSeq_id_Handle; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': -/usr/include/c++/10/bits/stl_heap.h:134:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 134 | __push_heap(_RandomAccessIterator __first, - | ^~~~~~~~~~~ -/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = ncbi::objects::CSeq_id_Handle; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': -/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, - | ^~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': -/usr/include/c++/10/bits/stl_heap.h:339:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 339 | __make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last, - | ^~~~~~~~~~~ -/usr/include/c++/10/bits/stl_heap.h:339:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiargs.hpp:84, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbi_param.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank/gbnative.cpp:33: +/usr/include/c++/10/bits/stl_vector.h: In member function 'virtual void ncbi::objects::CGBDataLoader_Native::GetBlobs(ncbi::objects::CDataLoader::TTSE_LockSets&)': +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1198 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/10/algorithm:62, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistl.hpp:180, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objects/general/Object_id_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objects/general/Object_id.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/feattable_edit.cpp:35: -/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiargs.hpp:84, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbi_param.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank/gbnative.cpp:33: +/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1945 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h:1924:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1924 | std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 1925 | __comp); - | ~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:1924:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:1666:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1666 | std::__make_heap(__first, __middle, __comp); - | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h: In member function 'void ncbi::objects::edit::CFeatTableEdit::GenerateLocusTags()': +/usr/include/c++/10/bits/stl_algo.h: In member function 'virtual ncbi::objects::CDataLoader::TTSE_LockSet ncbi::objects::CGBDataLoader_Native::GetExternalAnnotRecordsNA(const ncbi::objects::CBioseq_Info&, const ncbi::objects::SAnnotSelector*, ncbi::objects::CDataLoader::TProcessedNAs*)': /usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1974 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ @@ -29104,53 +28638,51 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1976 | __comp); | ~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1891 | std::__insertion_sort(__first, __last, __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:67, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objects/general/Object_id_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objects/general/Object_id.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/feattable_edit.cpp:35: -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1198 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/dbindex' -/usr/bin/g++ -std=gnu++14 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp -o sequence_istream_fasta.o -/usr/bin/g++ -std=gnu++14 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/dbindex/sequence_istream_bdb.cpp -o sequence_istream_bdb.o -/usr/bin/g++ -std=gnu++14 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/dbindex/dbindex.cpp -o dbindex.o -/usr/bin/g++ -std=gnu++14 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/dbindex/dbindex_factory.cpp -o dbindex_factory.o -/usr/bin/g++ -std=gnu++14 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/dbindex/dbindex_search.cpp -o dbindex_search.o -/bin/rm -f libxalgoblastdbindex.so .libxalgoblastdbindex.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libxalgoblastdbindex.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC sequence_istream_fasta.o sequence_istream_bdb.o dbindex.o dbindex_factory.o dbindex_search.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lblast -lseqdb -lxobjread -lxobjutil -lxobjmgr -lseqset -lseq -lxser -lxutil -lxncbi -ldl -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgoblastdbindex.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -/bin/ln -f libxalgoblastdbindex.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libxalgoblastdbindex.so -/bin/ln -f .xalgoblastdbindex.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.xalgoblastdbindex.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/dbindex' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/dbindex' -cd objtools/data_loaders/genbank/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=ncbi_xloader_genbank UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xloader_genbank -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/include/c++/10/bits/stl_algo.h:1977:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1977 | std::__final_insertion_sort(__first, __last, __comp); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h: In member function 'virtual ncbi::objects::CDataLoader::TTSE_LockSet ncbi::objects::CGBDataLoader_Native::GetExternalRecords(const ncbi::objects::CBioseq_Info&)': +/usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1974 | std::__introsort_loop(__first, __last, + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ + 1975 | std::__lg(__last - __first) * 2, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 1976 | __comp); + | ~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:1977:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1977 | std::__final_insertion_sort(__first, __last, __comp); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp -o bdbloader_rmt.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.cpp -o remote_blastdb_adapter.o +/bin/rm -f libncbi_xloader_blastdb_rmt.so .libncbi_xloader_blastdb_rmt.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libncbi_xloader_blastdb_rmt.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC bdbloader_rmt.o remote_blastdb_adapter.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lncbi_xloader_blastdb -lblast_services -lxobjmgr -lseq -lxncbi -ldl -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_blastdb_rmt.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib +/bin/ln -f libncbi_xloader_blastdb_rmt.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libncbi_xloader_blastdb_rmt.so +/bin/ln -f .ncbi_xloader_blastdb_rmt.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.ncbi_xloader_blastdb_rmt.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' +cd objtools/blast/gene_info_reader/demo/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=gene_info_reader LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/demo' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/demo' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/demo' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/demo' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/demo' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/gene_info_reader/demo TMPL=gene_info_reader -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/promote.cpp: In member function 'void ncbi::objects::edit::CPromote::x_PromoteCdregion(ncbi::objects::CSeq_feat&, ncbi::objects::edit::CPromote::TRnaMap*) const': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/promote.cpp:228:68: warning: 'static void ncbi::objects::CCdregion_translate::TranslateCdregion(std::string&, const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&, bool, bool, bool*, ncbi::objects::CCdregion_translate::ETranslationLengthProblemOptions)' is deprecated [-Wdeprecated-declarations] + 228 | remove_trailingX); + | ^ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/promote.cpp:52: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objmgr/util/sequence.hpp:936:17: note: declared here + 936 | static void TranslateCdregion(string& prot, + | ^~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank/gbnative.cpp:63: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp:38: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -29241,12 +28773,12 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank/gbnative.cpp:63: +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp:38: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank/gbnative.cpp:63: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp:38: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -29262,8 +28794,150 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp: In member function 'void ncbi::objects::edit::{anonymous}::CSeqdescSortMap::Init()': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp:172:39: warning: array subscript has type 'char' [-Wchar-subscripts] + 172 | while (descr_insert_order[index] != 0) + | ^~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp:174:40: warning: array subscript has type 'char' [-Wchar-subscripts] + 174 | if (descr_insert_order[index] >= size()) + | ^~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp:175:47: warning: array subscript has type 'char' [-Wchar-subscripts] + 175 | resize(descr_insert_order[index], kMax_Char); + | ^~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp:176:39: warning: array subscript has type 'char' [-Wchar-subscripts] + 176 | at(descr_insert_order[index]) = index; + | ^~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp: In member function 'void ncbi::CWriteDB_LMDB::x_CommitTransaction()': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp:295:42: warning: 'unsigned int ncbi::GetCpuCount()' is deprecated [-Wdeprecated-declarations] + 295 | unsigned int num_threads = GetCpuCount(); + | ^ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbifile.hpp:53, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp:35: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbi_system.hpp:479:14: note: declared here + 479 | unsigned int GetCpuCount(void) + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp: In function 'void ncbi::objects::edit::ConvertRawToDeltaByNs(ncbi::objects::CSeq_inst&, size_t, int, size_t, int, bool, int, int, int)': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp:1823:71: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int' [-Wsign-compare] + 1823 | if (n_len >= min_unknown && (max_unknown < 0 || n_len <= max_unknown)) { + | ~~~~~~^~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp:1825:74: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int' [-Wsign-compare] + 1825 | } else if (n_len >= min_known && (max_known < 0 || n_len <= max_known)) { + | ~~~~~~^~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp:1848:63: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int' [-Wsign-compare] + 1848 | if (n_len >= min_unknown && (max_unknown < 0 || n_len <= max_unknown)) { + | ~~~~~~^~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp:1850:66: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int' [-Wsign-compare] + 1850 | } else if (n_len >= min_known && (max_known < 0 || n_len <= max_known)) { + | ~~~~~~^~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp: In function 'void ncbi::objects::edit::TrimSeqData(ncbi::objects::CBioseq_Handle, ncbi::CRef, const TCuts&)': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp:2431:16: warning: enumeration value 'eSeqSubMap' not handled in switch [-Wswitch] + 2431 | switch (seqmap_ci.GetType()) { + | ^ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp:2431:16: warning: enumeration value 'eSeqRef' not handled in switch [-Wswitch] +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp:2431:16: warning: enumeration value 'eSeqEnd' not handled in switch [-Wswitch] +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp:2431:16: warning: enumeration value 'eSeqChunk' not handled in switch [-Wswitch] +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp:2431:16: warning: enumeration value 'eSeqLiteral' not handled in switch [-Wswitch] +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp: In function 'bool ncbi::objects::edit::s_FindSegment(const ncbi::objects::CDense_seg&, ncbi::objects::CDense_seg_Base::TDim, ncbi::TSeqPos, ncbi::objects::CDense_seg_Base::TNumseg&, ncbi::TSeqPos&)': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp:2787:21: warning: comparison of integer expressions of different signedness: 'ncbi::TSeqPos' {aka 'unsigned int'} and 'ncbi::TSignedSeqPos' {aka 'int'} [-Wsign-compare] + 2787 | if (pos >= start && pos < start + len) { + | ~~~~^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp:2787:39: warning: comparison of integer expressions of different signedness: 'ncbi::TSeqPos' {aka 'unsigned int'} and 'ncbi::TSignedSeqPos' {aka 'int'} [-Wsign-compare] + 2787 | if (pos >= start && pos < start + len) { + | ~~~~^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp: In function 'void ncbi::objects::edit::TrimSeqAlign(ncbi::objects::CBioseq_Handle, ncbi::CRef, const TCuts&)': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp:2991:32: warning: comparison of integer expressions of different signedness: 'ncbi::TSignedSeqPos' {aka 'int'} and 'ncbi::TSeqPos' {aka 'unsigned int'} [-Wsign-compare] + 2991 | else if (seg_start < cut_from) { + | ~~~~~~~~~~^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp:2994:32: warning: comparison of integer expressions of different signedness: 'ncbi::TSignedSeqPos' {aka 'int'} and 'ncbi::TSeqPos' {aka 'unsigned int'} [-Wsign-compare] + 2994 | else if (seg_start >= cut_from && + | ~~~~~~~~~~^~~~~~~~~~~ +In file included from /usr/include/c++/10/map:60, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/promote.cpp:32: +/usr/include/c++/10/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = ncbi::objects::CBioseq_Handle; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': +/usr/include/c++/10/bits/stl_tree.h:2458:7: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' changed in GCC 7.1 + 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/map:61, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/promote.cpp:32: +/usr/include/c++/10/bits/stl_map.h: In member function 'void ncbi::objects::edit::CPromote::x_CopyCdregionToRNA(const ncbi::objects::CSeq_feat&, ncbi::objects::CBioseq_Handle&, ncbi::objects::edit::CPromote::TRnaMap*) const': +/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' changed in GCC 7.1 + 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 502 | std::tuple(__k), + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 503 | std::tuple<>()); + | ~~~~~~~~~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank/gbloader.cpp -o gbloader.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank/gbnative.cpp -o gbnative.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank/gbload_util.cpp -o gbload_util.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank/psg_loader.cpp -o psg_loader.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank/psg_loader_impl.cpp -o psg_loader_impl.o +/bin/rm -f libncbi_xloader_genbank.a .libncbi_xloader_genbank.a.stamp +/bin/rm -f libncbi_xloader_genbank.so .libncbi_xloader_genbank.so.stamp +ar cr libncbi_xloader_genbank.a gbloader.o gbnative.o gbload_util.o psg_loader.o psg_loader_impl.o +/usr/bin/g++ -std=gnu++14 -shared -o libncbi_xloader_genbank.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC gbloader.o gbnative.o gbload_util.o psg_loader.o psg_loader_impl.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xr/usr/include/c++/10/bits/stl_map.h: In member function 'void ncbi::objects::edit::CPromote::x_PromoteFeatures(ncbi::objects::CSeq_annot&) const': +/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' changed in GCC 7.1 + 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 502 | std::tuple(__k), + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 503 | std::tuple<>()); + | ~~~~~~~~~~~~~~~ +eader_id2 -lncbi_xreader -lid2 -lxobjmgr -lid1 -lseqedit -lseqsplit -lsubmit -lgenome_collection -lpsg_client -lseqset -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxconnserv -lxcompress -lxser -lxthrserv -lsequtil -lxconnect -lxutil -lxncbi -lz -lbz2 -ldl -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_genbank.a /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib +/bin/ln -f libncbi_xloader_genbank.a /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libncbi_xloader_genbank.a +/bin/ln -f .ncbi_xloader_genbank-static.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.ncbi_xloader_genbank-static.dep +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_genbank.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib +/bin/ln -f libncbi_xloader_genbank.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libncbi_xloader_genbank.so +/bin/ln -f .ncbi_xloader_genbank.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.ncbi_xloader_genbank.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' +cd objtools/blast/seqdb_reader/demo/ && NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=seqdb_demo LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/demo TMPL=seqdb_demo -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/demo' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -DNCBI_APP_BUILT_AS=gene_info_reader /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp -o gene_info_reader_app.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie gene_info_reader_app.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lgene_info -lxobjutil -lseqdb -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -ldl -llmdb -lpthread -ldl -lm -lpthread -o gene_info_reader +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f gene_info_reader /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin +/bin/ln -f gene_info_reader /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/gene_info_reader +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/demo' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/demo' +cd objtools/blast/seqdb_reader/test/ && NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=seqdb_perf LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/test' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/test' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/test' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/test' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/test' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/test TMPL=seqdb_perf -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank/gbloader.cpp:66: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:35: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -29354,12 +29028,12 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank/gbloader.cpp:66: +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:35: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank/gbloader.cpp:66: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:35: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -29375,25 +29049,398 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/remote_updater.cpp: In member function 'void ncbi::objects::edit::CRemoteUpdater::UpdateOrgFromTaxon(ncbi::objects::edit::CRemoteUpdater::FLogger, ncbi::objects::CSeq_entry_EditHandle&)': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/remote_updater.cpp:608:59: warning: 'void ncbi::objects::edit::CRemoteUpdater::UpdateOrgFromTaxon(ncbi::objects::edit::CRemoteUpdater::FLogger, ncbi::objects::CSeqdesc&)' is deprecated [-Wdeprecated-declarations] - 608 | UpdateOrgFromTaxon(logger, (CSeqdesc&)*desc_it); +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/edit' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/gene_utils.cpp -o gene_utils.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp -o seq_entry_edit.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/promote.cpp -o promote.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/autodef_with_tax.cpp -o autodef_with_tax.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/field_handler.cpp -o field_handler.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/apply_object.cpp -o apply_object.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -We/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp: In member function 'void CSeqDBPerfApp::x_UpdateMemoryUsage(int)': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:114:59: warning: 'bool ncbi::GetMemoryUsage(size_t*, size_t*, size_t*)' is deprecated [-Wdeprecated-declarations] + 114 | if (GetMemoryUsage(&mu.total, &mu.resident, &mu.shared)) { | ^ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/remote_updater.cpp:298:6: note: declared here - 298 | void CRemoteUpdater::UpdateOrgFromTaxon(FLogger logger, CSeqdesc& obj) - | ^~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/parse_text_options.cpp: In function 'ncbi::SIZE_TYPE ncbi::objects::edit::FindWithOptions(const string&, const string&, ncbi::SIZE_TYPE, bool, bool)': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/parse_text_options.cpp:47:73: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] - 47 | pos = NStr::Find(str, pattern, pos, NPOS, NStr::eFirst, str_case); - | ^ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:36: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbi_system.hpp:511:13: note: declared here + 511 | extern bool GetMemoryUsage(size_t* total, size_t* resident, size_t* shared); + | ^~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp: In member function 'int CSeqDBPerfApp::x_ScanDatabase()': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:153:31: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'int'} and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] + 153 | for (ssize_t i = 0; i < oids2iterate.size(); i++) { + | ~~^~~~~~~~~~~~~~~~~~~~~ + -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/multisource_util.cpp -o multisource_util.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/criteria.cpp -o criteria.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp -o writedb_lmdb.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/seqidlist_writer.cpp -o seqidlist_writer.o +/bin/rm -f libwritedb.so .libwritedb.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libwritedb.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC writedb.o writedb_impl.o writedb_volume.o writedb_files.o writedb_isam.o writedb_gimask.o writedb_convert.o writedb_general.o writedb_column.o mask_info_registry.o taxid_set.o build_db.o multisource_util.o criteria.o writedb_lmdb.o seqidlist_writer.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lseqdb -lxobjread -lxobjmgr -lblastdb -lseqset -lseq -lgeneral -lxser -lsequtil -lxutil -lxncbi -ldl -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libwritedb.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib +/bin/ln -f libwritedb.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libwritedb.so +/bin/ln -f .writedb.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.writedb.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer' +cd objtools/seqmasks_io/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=seqmasks_io UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/seqmasks_io' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/seqmasks_io' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/seqmasks_io' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/seqmasks_io' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/seqmasks_io' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/seqmasks_io TMPL=seqmasks_io -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -DNCBI_APP_BUILT_AS=seqdb_demo /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp -o seqdb_demo.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie seqdb_demo.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lseqdb -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -ldl -ldl -lm -lpthread -o seqdb_demo +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_demo /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin +/bin/ln -f seqdb_demo /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/seqdb_demo +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' +cd algo/blast/dbindex/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xalgoblastdbindex UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/dbindex' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/dbindex' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/dbindex' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/dbindex' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/dbindex' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/dbindex TMPL=xalgoblastdbindex -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/test' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -DNCBI_APP_BUILT_AS=seqdb_perf /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp -o seqdb_perf.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie seqdb_perf.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lseqdb -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -ldl -llmdb -lpthread -ldl -lm -lpthread -o seqdb_perf +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_perf /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin +/bin/ln -f seqdb_perf /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/seqdb_perf +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/test' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/test' +cd objtools/alnmgr/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=alnmgr UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/alnmgr' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/alnmgr' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/alnmgr' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/alnmgr' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/alnmgr' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/alnmgr TMPL=alnmgr -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp:36: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] + 94 | objects::CFastaReader::fAllSeqIds | + | ^~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp:36: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here + 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) + | ^~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp:36: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] + 94 | objects::CFastaReader::fAllSeqIds | + | ^~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp:36: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here + 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/seqid_guesser.cpp: In constructor 'ncbi::objects::edit::CSeqIdGuesser::CSeqIdGuesser(ncbi::objects::CSeq_entry_Handle)': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/seqid_guesser.cpp:92:91: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] + 92 | size_t pos = NStr::Find(tag_str, "/", 0, string::npos, NStr::eLast); + | ^ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/edit/parse_text_options.hpp:34, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/parse_text_options.cpp:33: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objects/general/Dbtag_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objects/general/Dbtag.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/seqid_guesser.cpp:31: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:5308:11: note: declared here 5308 | SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, | ^~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/external_annots.cpp:36: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/seqid_guesser.cpp: In static member function 'static std::vector > ncbi::objects::edit::CSeqIdGuesser::GetIdStrings(ncbi::objects::CBioseq_Handle)': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/seqid_guesser.cpp:171:87: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] + 171 | size_t pos = NStr::Find(tag_str, "/", 0, string::npos, NStr::eLast); + | ^ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objects/general/Dbtag_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objects/general/Dbtag.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/seqid_guesser.cpp:31: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:5308:11: note: declared here + 5308 | SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, + | ^~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp:52:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] + 52 | objects::CFastaReader::fAllSeqIds; + | ^~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp:35: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here + 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp:52:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] + 52 | objects::CFastaReader::fAllSeqIds; + | ^~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp:35: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here + 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/dblink_field.cpp: In static member function 'static ncbi::objects::edit::CDBLinkField::EDBLinkFieldType ncbi::objects::edit::CDBLinkField::GetTypeForLabel(std::string)': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/dblink_field.cpp:283:17: warning: variable 'normal' set but not used [-Wunused-but-set-variable] + 283 | CTempString normal = GetNormalizedDBLinkFieldName(label); + | ^~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/seqmasks_io' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/seqmasks_io/mask_cmdline_args.cpp -o mask_cmdline_args.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp -o mask_bdb_reader.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp -o mask_fasta_reader.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/seqmasks_io/mask_writer.cpp -o mask_writer.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp -o mask_writer_fasta.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/seqmasks_io/mask_writer_int.cpp -o mask_writer_int.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/dbindex/dbindex.cpp: In function 'const ncbi::blastdbindex::SIndexHeader ncbi::blastdbindex::ReadIndexHeader(void*) [with bool LEGACY = true]': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/dbindex/dbindex.cpp:306:19: warning: variable 'tmp' set but not used [-Wunused-but-set-variable] + 306 | unsigned long tmp; + | ^~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/dbindex/dbindex_factory.cpp: In member function 'std::string ncbi::blastdbindex::CSubjectMap_Factory_Base::extractSeqVector(ncbi::blastdbindex::CSubjectMap_Factory_Base::TSeqData&)': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/dbindex/dbindex_factory.cpp:658:53: warning: 'std::string ncbi::objects::sequence::GetTitle(const ncbi::objects::CBioseq_Handle&, ncbi::objects::sequence::TGetTitleFlags)' is deprecated [-Wdeprecated-declarations] + 658 | string idstr = objects::sequence::GetTitle( bsh ); + | ^ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/dbindex/dbindex_factory.cpp:42: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objmgr/util/sequence.hpp:289:8: note: declared here + 289 | string GetTitle(const CBioseq_Handle& hnd, TGetTitleFlags flags = 0); + | ^~~~~~~~ +In file included from /usr/include/c++/10/vector:72, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objects/general/Dbtag_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objects/general/Dbtag.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/seqid_guesser.cpp:31: +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const ncbi::objects::CBioseq_Handle&}; _Tp = ncbi::objects::CBioseq_Handle; _Alloc = std::allocator]': +/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 426 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/vector:67, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objects/general/Dbtag_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objects/general/Dbtag.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/seqid_guesser.cpp:31: +/usr/include/c++/10/bits/stl_vector.h: In member function 'std::vector ncbi::objects::edit::CSeqIdGuesser::FindMatches(ncbi::CRef)': +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1198 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1198 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +rror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/string_constraint.cpp -o string_constraint.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/seqid_guesser.cpp -o seqid_guesser.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/dblink_field.cpp -o dblink_field.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/struc_comm_field.cpp -o struc_comm_field.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/text_desc_field.cpp -o text_desc_field.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/gb_block_field.cpp -o gb_block_field.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reIn file included from /usr/include/c++/10/vector:72, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbitime.hpp:65, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbi_system.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbifile.hpp:53, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/dbindex/dbindex_search.cpp:38: +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]': +/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 426 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/vector.tcc: In member function 'ncbi::CConstRef ncbi::blastdbindex::CSearch_Base::operator()() [with bool LEGACY = true; long unsigned int NHITS = 0; derived_t = ncbi::blastdbindex::CSearch]': +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/seqmasks_io/mask_writer_tab.cpp -o mask_writer_tab.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/seqmasks_io/mask_writer_seqloc.cpp -o mask_writer_seqloc.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.cpp -o mask_writer_blastdb_maskinfo.o +/bin/rm -f libseqmasks_io.so .libseqmasks_io.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libseqmasks_io.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC mask_cmdline_args.o mask_bdb_reader.o mask_fasta_reader.o mask_writer.o mask_writer_fasta.o mask_writer_int.o mask_writer_tab.o mask_writer_seqloc.o mask_writer_blastdb_maskinfo.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lseqdb -lxobjread -lxobjutil -lxobjmgr -lblastdb -lseqset -lseq -lxser -lxncbi -llmdb -lpthread -ldl -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqmasks_io.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib +/bin/ln -f libseqmasks_io.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libseqmasks_io.so +/bin/ln -f .seqmasks_io.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.seqmasks_io.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/seqmasks_io' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/seqmasks_io' +cd objtools/blast/blastdb_format/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=blastdb_format UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/blastdb_format TMPL=blastdb_format -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +/usr/include/c++/10/bits/vector.tcc: In member function 'ncbi::CConstRef ncbi::blastdbindex::CSearch_Base::operator()() [with bool LEGACY = false; long unsigned int NHITS = 0; derived_t = ncbi::blastdbindex::CSearch]': +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/alnmgr' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/alnmgr/aln_builders.cpp -o aln_builders.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/alnmgr/aln_converters.cpp -o aln_converters.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/alnmgr/aln_generators.cpp -o aln_generators.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/alnmgr/aln_seqid.cpp -o aln_seqid.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/alnmgr/aln_serial.cpp -o aln_serial.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/alnmgr/alndiag.cpp -o alndiag.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -/usr/include/c++/10/bits/vector.tcc: In member function 'ncbi::CConstRef ncbi::blastdbindex::CSearch_Base::operator()() [with bool LEGACY = true; long unsigned int NHITS = 1; derived_t = ncbi::blastdbindex::CSearch]': +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/vector.tcc: In member function 'ncbi::CConstRef ncbi::blastdbindex::CSearch_Base::operator()() [with bool LEGACY = false; long unsigned int NHITS = 1; derived_t = ncbi::blastdbindex::CSearch]': +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/link_cds_mrna.cpp: In function 'void ncbi::{anonymous}::xLinkCDSmRNAbyLabelAndLocation(ncbi::objects::CSeq_annot_Base::C_Data::TFtable&)': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/link_cds_mrna.cpp:135:13: warning: unused variable 'best_fit_size' [-Wunused-variable] + 135 | int best_fit_size = -1; + | ^~~~~~~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/dbindex' +/usr/bin/g++ -std=gnu++14 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp -o sequence_istream_fasta.o +/usr/bin/g++ -std=gnu++14 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/dbindex/sequence_istream_bdb.cpp -o sequence_istream_bdb.o +/usr/bin/g++ -std=gnu++14 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/dbindex/dbindex.cpp -o dbindex.o +/usr/bin/g++ -std=gnu++14 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/dbindex/dbindex_factory.cpp -o dbindex_factory.o +/usr/bin/g++ -std=gnu++14 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/dbindex/dbindex_search.cpp -o dbindex_search.o +/bin/rm -f libxalgoblastdbindex.so .libxalgoblastdbindex.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libxalgoblastdbindex.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC sequence_istream_fasta.o sequence_istream_bdb.o dbindex.o dbindex_factory.o dbindex_search.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lblast -lseqdb -lxobjread -lxobjutil -lxobjmgr -lseqset -lseq -lxser -lxutil -lxncbi -ldl -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgoblastdbindex.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib +/bin/ln -f libxalgoblastdbindex.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libxalgoblastdbindex.so +/bin/ln -f .xalgoblastdbindex.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.xalgoblastdbindex.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/dbindex' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/dbindex' +cd objtools/simple/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xobjsimple UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/simple' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/simple' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/simple' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/simple' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/simple' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/simple TMPL=xobjsimple -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/alnmgr/alnmap.cpp: In member function 'ncbi::CRef ncbi::objects::CAlnMap::CreateAlignFromRange(const std::vector&, ncbi::TSignedSeqPos, ncbi::TSignedSeqPos, ncbi::objects::CAlnMap::ESegmentTrimFlag)': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/alnmgr/alnmap.cpp:1472:35: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CAlnMap::TNumrow' {aka 'int'} and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] + 1472 | for (TNumrow row = 0; row < selected_rows.size(); row++) { + | ~~~~^~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:35: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:85:69: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] + 85 | CSeqFormatterConfig config = CSeqFormatterConfig()); + | ^ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here + 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:96:85: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] + 96 | void DumpAll(CSeqDB& blastdb, CSeqFormatterConfig config = CSeqFormatterConfig()); + | ^ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here + 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:85:68: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] + 85 | CSeqFormatterConfig config = CSeqFormatterConfig()); + | ^ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here + 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:96:84: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] + 96 | void DumpAll(CSeqDB& blastdb, CSeqFormatterConfig config = CSeqFormatterConfig()); + | ^ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here + 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:49:74: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] + 49 | CSeqFormatterConfig config /* = CSeqFormatterConfig() */) + | ^ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:35: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here + 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:270:72: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] + 270 | void CSeqFormatter::DumpAll(CSeqDB& blastdb, CSeqFormatterConfig config) + | ^ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:35: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here + 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/alnmgr/alnmatch.cpp: In static member function 'static bool ncbi::objects::CAlnMixMatches::x_CompareChainScores(const ncbi::CRef&, const ncbi::CRef&)': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/alnmgr/alnmatch.cpp:76:55: warning: suggest parentheses around '&&' within '||' [-Wparentheses] + 76 | match1->m_ChainScore == match2->m_ChainScore && + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ + 77 | match1->m_Score > match2->m_Score || + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/alnmgr/alnmatch.cpp: In member function 'void ncbi::objects::CAlnMixMatches::Add(const ncbi::objects::CDense_seg&, ncbi::objects::CAlnMixMatches::TAddFlags)': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/alnmgr/alnmatch.cpp:192:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] + 192 | (aln_seq1->m_StrandScore > 0 && + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ + 193 | strand1 == eNa_strand_minus || + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/alnmgr/alnmatch.cpp:196:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] + 196 | aln_seq2->m_StrandScore > 0 && + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ + 197 | strand2 == eNa_strand_minus || + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/alnmgr/alnmatch.cpp:198:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] + 198 | aln_seq2->m_StrandScore < 0 && + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ + 199 | strand2 != eNa_strand_minus)) { + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/cds_fix.cpp: In function 'bool ncbi::objects::edit::AdjustForCDSPartials(const ncbi::objects::CSeq_feat&, ncbi::objects::CSeq_entry_Handle)': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/cds_fix.cpp:457:82: warning: 'bool ncbi::objects::edit::AdjustProteinMolInfoToMatchCDS(ncbi::objects::CMolInfo&, const ncbi::objects::CSeq_feat&)' is deprecated [-Wdeprecated-declarations] + 457 | any_change |= AdjustProteinMolInfoToMatchCDS((*it)->SetMolinfo(), cds); + | ^ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/cds_fix.cpp:366:6: note: declared here + 366 | bool AdjustProteinMolInfoToMatchCDS(CMolInfo& molinfo, const CSeq_feat& cds) + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/cds_fix.cpp:463:75: warning: 'bool ncbi::objects::edit::AdjustProteinMolInfoToMatchCDS(ncbi::objects::CMolInfo&, const ncbi::objects::CSeq_feat&)' is deprecated [-Wdeprecated-declarations] + 463 | AdjustProteinMolInfoToMatchCDS(new_molinfo_desc->SetMolinfo(), cds); + | ^ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/cds_fix.cpp:366:6: note: declared here + 366 | bool AdjustProteinMolInfoToMatchCDS(CMolInfo& molinfo, const CSeq_feat& cds) + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/simple' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/simple/simple_om.cpp -o simple_om.o +/bin/rm -f libxobjsimple.so .libxobjsimple.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libxobjsimple.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC simple_om.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lncbi_xloader_genbank -lxobjmgr -lseq -lxncbi -ldl -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjsimple.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib +/bin/ln -f libxobjsimple.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libxobjsimple.so +/bin/ln -f .xobjsimple.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.xobjsimple.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/simple' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/simple' +cd algo/blast/unit_tests/seqdb_reader/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=seqdb_lmdb_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/seqdb_reader TMPL=seqdb_lmdb_unit_test -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/alnmgr/alnmap.cpp -o alnmap.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/alnmgr/alnmapprint.cpp -o alnmapprint.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/alnmgr/alnmatch.cpp -o alnmatch.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/alnmgr/alnmerger.cpp -o alnmerger.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/alnmgr/alnmix.cpp -o alnmix.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/alnmgr/alnpos_ci.cpp -o alnpos_ci.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/alnmgr/In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_lmdb_unit_test.cpp:38: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -29484,12 +29531,14 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/external_annots.cpp:36: +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_lmdb_unit_test.cpp:38: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/external_annots.cpp:36: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_lmdb_unit_test.cpp:38: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -29505,249 +29554,100 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -EBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/rna_edit.cpp -o rna_edit.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/remote_updater.cpp -o remote_updater.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/parse_text_options.cpp -o parse_text_options.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/publication_edit.cpp -o publication_edit.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/gap_trim.cpp -o gap_trim.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/external_annots.cpp -o external_annots.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objIn file included from /usr/include/c++/10/bits/stl_algo.h:61, - from /usr/include/c++/10/algorithm:62, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistl.hpp:180, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiargs.hpp:84, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbi_param.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank/gbnative.cpp:33: -/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = ncbi::objects::CSeq_id_Handle; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': -/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, - | ^~~~~~~~~~~~~ -In file included from /usr/include/c++/10/algorithm:62, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistl.hpp:180, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiargs.hpp:84, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbi_param.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank/gbnative.cpp:33: -/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]': -/usr/include/c++/10/bits/stl_algo.h:1819:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1819 | __unguarded_linear_insert(_RandomAccessIterator __last, - | ^~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': -/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1839 | __insertion_sort(_RandomAccessIterator __first, - | ^~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': -/usr/include/c++/10/bits/stl_algo.h:1881:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1881 | __final_insertion_sort(_RandomAccessIterator __first, - | ^~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:1881:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1891 | std::__insertion_sort(__first, __last, __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:72, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiargs.hpp:84, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbi_param.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank/gbnative.cpp:33: -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const ncbi::objects::CSeq_id_Handle&}; _Tp = ncbi::objects::CSeq_id_Handle; _Alloc = std::allocator]': -/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 426 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:67, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiargs.hpp:84, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbi_param.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank/gbnative.cpp:33: -/usr/include/c++/10/bits/stl_vector.h: In member function 'virtual void ncbi::objects::CGBDataLoader_Native::GetBlobs(ncbi::objects::CDataLoader::TTSE_LockSets&)': -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1198 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In file included from /usr/include/c++/10/algorithm:62, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistl.hpp:180, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiargs.hpp:84, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbi_param.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank/gbnative.cpp:33: -/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': -/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1945 | __introsort_loop(_RandomAccessIterator __first, - | ^~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/alnmgr' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/alnmgr/aln_builders.cpp -o aln_builders.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/alnmgr/aln_converters.cpp -o aln_converters.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/alnmgr/aln_generators.cpp -o aln_generators.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/alnmgr/aln_seqid.cpp -o aln_seqid.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/alnmgr/aln_serial.cpp -o aln_serial.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/alnmgr/alndiag.cpp -o alndiag.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -/usr/include/c++/10/bits/stl_algo.h: In member function 'virtual ncbi::objects::CDataLoader::TTSE_LockSet ncbi::objects::CGBDataLoader_Native::GetExternalAnnotRecordsNA(const ncbi::objects::CBioseq_Info&, const ncbi::objects::SAnnotSelector*, ncbi::objects::CDataLoader::TProcessedNAs*)': -/usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1974 | std::__introsort_loop(__first, __last, - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ - 1975 | std::__lg(__last - __first) * 2, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 1976 | __comp); - | ~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:1977:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1977 | std::__final_insertion_sort(__first, __last, __comp); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/feature_propagate.cpp: In member function 'ncbi::TSignedSeqPos ncbi::objects::edit::CFeaturePropagator::SeqPosToAlignPos(ncbi::TSignedSeqPos, ncbi::objects::CDense_seg_Base::TDim, bool, bool&, bool&)': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/feature_propagate.cpp:274:19: warning: unused variable 'length' [-Wunused-variable] - 274 | TSignedSeqPos length = bsh.GetBioseqLength(); - | ^~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/feature_propagate.cpp: In member function 'ncbi::TSignedSeqPos ncbi::objects::edit::CFeaturePropagator::AlignPosToSeqPos(ncbi::TSignedSeqPos, ncbi::objects::CDense_seg_Base::TDim, bool, bool&, bool&)': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/feature_propagate.cpp:373:31: warning: unused variable 'len' [-Wunused-variable] - 373 | TSignedSeqPos len = denseg.GetLens()[seg]; - | ^~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/feature_propagate.cpp:330:19: warning: unused variable 'length' [-Wunused-variable] - 330 | TSignedSeqPos length = bsh.GetBioseqLength(); - | ^~~~~~ -/usr/include/c++/10/bits/stl_algo.h: In member function 'virtual ncbi::objects::CDataLoader::TTSE_LockSet ncbi::objects::CGBDataLoader_Native::GetExternalRecords(const ncbi::objects::CBioseq_Info&)': -/usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1974 | std::__introsort_loop(__first, __last, - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ - 1975 | std::__lg(__last - __first) * 2, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 1976 | __comp); - | ~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:1977:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1977 | std::__final_insertion_sort(__first, __last, __comp); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank/gbloader.cpp -o gbloader.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank/gbnative.cpp -o gbnative.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank/gbload_util.cpp -o gbload_util.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank/psg_loader.cpp -o psg_loader.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/genbank/psg_loader_impl.cpp -o psg_loader_impl.o -/bin/rm -f libncbi_xloader_genbank.a .libncbi_xloader_genbank.a.stamp -/bin/rm -f libncbi_xloader_genbank.so .libncbi_xloader_genbank.so.stamp -ar cr libncbi_xloader_genbank.a gbloader.o gbnative.o gbload_util.o psg_loader.o psg_loader_impl.o -/usr/bin/g++ -std=gnu++14 -shared -o libncbi_xloader_genbank.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC gbloader.o gbnative.o gbload_util.o psg_loader.o psg_loader_impl.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xr/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/alnmgr/alnmap.cpp: In member function 'ncbi::CRef ncbi::objects::CAlnMap::CreateAlignFromRange(const std::vector&, ncbi::TSignedSeqPos, ncbi::TSignedSeqPos, ncbi::objects::CAlnMap::ESegmentTrimFlag)': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/alnmgr/alnmap.cpp:1472:35: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CAlnMap::TNumrow' {aka 'int'} and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] - 1472 | for (TNumrow row = 0; row < selected_rows.size(); row++) { - | ~~~~^~~~~~~~~~~~~~~~~~~~~~ -eader_id2 -lncbi_xreader -lid2 -lxobjmgr -lid1 -lseqedit -lseqsplit -lsubmit -lgenome_collection -lpsg_client -lseqset -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxconnserv -lxcompress -lxser -lxthrserv -lsequtil -lxconnect -lxutil -lxncbi -lz -lbz2 -ldl -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_genbank.a /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -/bin/ln -f libncbi_xloader_genbank.a /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libncbi_xloader_genbank.a -/bin/ln -f .ncbi_xloader_genbank-static.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.ncbi_xloader_genbank-static.dep -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_genbank.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -/bin/ln -f libncbi_xloader_genbank.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libncbi_xloader_genbank.so -/bin/ln -f .ncbi_xloader_genbank.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.ncbi_xloader_genbank.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' -cd objtools/data_loaders/blastdb/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=ncbi_xloader_blastdb_rmt UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb_rmt -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/alnmgr/alnmatch.cpp: In static member function 'static bool ncbi::objects::CAlnMixMatches::x_CompareChainScores(const ncbi::CRef&, const ncbi::CRef&)': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/alnmgr/alnmatch.cpp:76:55: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - 76 | match1->m_ChainScore == match2->m_ChainScore && - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ - 77 | match1->m_Score > match2->m_Score || - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/alnmgr/alnmatch.cpp: In member function 'void ncbi::objects::CAlnMixMatches::Add(const ncbi::objects::CDense_seg&, ncbi::objects::CAlnMixMatches::TAddFlags)': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/alnmgr/alnmatch.cpp:192:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - 192 | (aln_seq1->m_StrandScore > 0 && - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ - 193 | strand1 == eNa_strand_minus || - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/alnmgr/alnmatch.cpp:196:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - 196 | aln_seq2->m_StrandScore > 0 && - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ - 197 | strand2 == eNa_strand_minus || - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/alnmgr/alnmatch.cpp:198:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - 198 | aln_seq2->m_StrandScore < 0 && - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ - 199 | strand2 != eNa_strand_minus)) { - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/text_object_description.cpp:336:15: warning: 'std::string ncbi::objects::edit::GetTextObjectDescription(const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&, const string&)' defined but not used [-Wunused-function] - 336 | static string GetTextObjectDescription(const CSeq_feat& seq_feat, CScope& scope, const string& product) - | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/alnmgr/alnmerger.cpp: In member function 'void ncbi::objects::CAlnMixMerger::x_CreateDenseg()': /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/alnmgr/alnmerger.cpp:1210:44: warning: comparison of integer expressions of different signedness: 'const unsigned int' and 'int' [-Wsign-compare] 1210 | if (start_its_i->second->first != -1) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ -tools/edit/feature_propagate.cpp -o feature_propagate.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/text_object_description.cpp -o text_object_description.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/seq_edit.cpp -o seq_edit.o -/bin/rm -f libxobjedit.so .libxobjedit.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libxobjedit.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC gene_utils.o seq_entry_edit.o promote.o autodef_with_tax.o field_handler.o apply_object.o string_constraint.o seqid_guesser.o dblink_field.o struc_comm_field.o text_desc_field.o gb_block_field.o link_cds_mrna.o cds_fix.o loc_edit.o mail_report.o feattable_edit.o gaps_edit.o source_edit.o rna_edit.o remote_updater.o parse_text_options.o publication_edit.o gap_trim.o external_annots.o feature_propagate.o text_object_description.o seq_edit.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lxobjutil -ltaxon3 -lvalid -lmlacli -lxlogging -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -ldl -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjedit.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -/bin/ln -f libxobjedit.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libxobjedit.so -/bin/ln -f .xobjedit.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.xobjedit.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/edit' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/edit' -cd algo/blast/dbindex/makeindex/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=makeindex LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/dbindex/makeindex' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/dbindex/makeindex' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/dbindex/makeindex' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/dbindex/makeindex' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/dbindex/makeindex' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/dbindex/makeindex TMPL=makeindex -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/feattable_edit.cpp:51: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/edit/feattable_edit.hpp: In constructor 'ncbi::objects::edit::CFeatTableEdit::CFeatTableEdit(ncbi::objects::CSeq_annot&, const string&, unsigned int, unsigned int, ncbi::objects::IObjtoolsListener*)': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/edit/feattable_edit.hpp:187:24: warning: 'ncbi::objects::edit::CFeatTableEdit::mpMessageListener' will be initialized after [-Wreorder] + 187 | IObjtoolsListener* mpMessageListener; + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/edit/feattable_edit.hpp:92:18: warning: 'unsigned int ncbi::objects::edit::CFeatTableEdit::mNextFeatId' [-Wreorder] + 92 | unsigned int mNextFeatId = 1; + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/feattable_edit.cpp:114:1: warning: when initialized here [-Wreorder] + 114 | CFeatTableEdit::CFeatTableEdit( + | ^~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/feattable_edit.cpp:51: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/edit/feattable_edit.hpp:92:18: warning: 'ncbi::objects::edit::CFeatTableEdit::mNextFeatId' will be initialized after [-Wreorder] + 92 | unsigned int mNextFeatId = 1; + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/edit/feattable_edit.hpp:91:18: warning: 'unsigned int ncbi::objects::edit::CFeatTableEdit::mLocusTagNumber' [-Wreorder] + 91 | unsigned int mLocusTagNumber = 1; + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/feattable_edit.cpp:114:1: warning: when initialized here [-Wreorder] + 114 | CFeatTableEdit::CFeatTableEdit( + | ^~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/feattable_edit.cpp:51: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/edit/feattable_edit.hpp:91:18: warning: 'ncbi::objects::edit::CFeatTableEdit::mLocusTagNumber' will be initialized after [-Wreorder] + 91 | unsigned int mLocusTagNumber = 1; + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/edit/feattable_edit.hpp:90:12: warning: 'std::string ncbi::objects::edit::CFeatTableEdit::mLocusTagPrefix' [-Wreorder] + 90 | string mLocusTagPrefix; + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/feattable_edit.cpp:114:1: warning: when initialized here [-Wreorder] + 114 | CFeatTableEdit::CFeatTableEdit( + | ^~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/mail_report.cpp: In function 'void ncbi::objects::edit::MakeMailReportPostReport(ncbi::objects::CSeq_table&, ncbi::objects::CScope&)': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/mail_report.cpp:103:13: warning: unused variable 'taxid' [-Wunused-variable] + 103 | int taxid = 0; + | ^~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/blastdb_format/seq_writer.cpp -o seq_writer.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp -o blastdb_dataextract.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp -o blastdb_formatter.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/blastdb_format/seq_formatter.cpp -o seq_formatter.o +/bin/rm -f libblastdb_format.so .libblastdb_format.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libblastdb_format.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC seq_writer.o blastdb_dataextract.o blastdb_formatter.o seq_formatter.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lseqdb -lxobjutil -lxobjmgr -lseq -lxser -lsequtil -lxutil -lxncbi -ldl -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastdb_format.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib +/bin/ln -f libblastdb_format.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libblastdb_format.so +/bin/ln -f .blastdb_format.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.blastdb_format.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' +cd algo/blast/unit_tests/seqdb_reader/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=seqdb_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/seqdb_reader TMPL=seqdb_unit_test -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, + from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, + from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, + from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, + from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, + from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, + from /usr/include/boost/shared_ptr.hpp:17, + from /usr/include/boost/test/tools/assertion_result.hpp:21, + from /usr/include/boost/test/tools/old/impl.hpp:20, + from /usr/include/boost/test/test_tools.hpp:46, + from /usr/include/boost/test/unit_test.hpp:18, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_lmdb_unit_test.cpp:38: +/usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' + 14 | BOOST_HEADER_DEPRECATED( "" ) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/alnmgr/alnsegments.cpp: In member function 'void ncbi::objects::CAlnMixSegments::FillUnalignedRegions()': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/alnmgr/alnsegments.cpp:311:27: warning: suggest parentheses around '&&' within '||' [-Wparentheses] + 311 | if (plus && prev_start_plus_len < start || + | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/dbindex/makeindex/mkindex_app.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp:51: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -29763,9 +29663,9 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -29781,9 +29681,9 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -29799,9 +29699,9 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -29817,9 +29717,9 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -29829,20 +29729,20 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/dbindex/makeindex/mkindex_app.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp:35: +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp:51: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/dbindex/makeindex/mkindex_app.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp:51: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -29852,9 +29752,223 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/bits/stl_algobase.h:71, + from /usr/include/c++/10/algorithm:61, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistl.hpp:180, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objects/general/Object_id_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objects/general/Object_id.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/feattable_edit.cpp:35: +/usr/include/c++/10/bits/predefined_ops.h: In function 'constexpr bool __gnu_cxx::__ops::_Iter_comp_iter<_Compare>::operator()(_Iterator1, _Iterator2) [with _Iterator1 = __gnu_cxx::__normal_iterator >; _Iterator2 = __gnu_cxx::__normal_iterator >; _Compare = bool (*)(const ncbi::objects::CSeq_id_Handle&, ncbi::objects::CSeq_id_Handle)]': +/usr/include/c++/10/bits/predefined_ops.h:155:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 155 | operator()(_Iterator1 __it1, _Iterator2 __it2) + | ^~~~~~~~ +/usr/include/c++/10/bits/predefined_ops.h:155:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +In file included from /usr/include/c++/10/vector:72, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objects/general/Object_id_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objects/general/Object_id.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/feattable_edit.cpp:35: +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const ncbi::objects::CSeq_id_Handle&}; _Tp = ncbi::objects::CSeq_id_Handle; _Alloc = std::allocator]': +/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 426 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 +In file included from /usr/include/c++/10/algorithm:62, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistl.hpp:180, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objects/general/Object_id_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objects/general/Object_id.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/feattable_edit.cpp:35: +/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]': +/usr/include/c++/10/bits/stl_algo.h:1819:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1819 | __unguarded_linear_insert(_RandomAccessIterator __last, + | ^~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': +/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1839 | __insertion_sort(_RandomAccessIterator __first, + | ^~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': +/usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 79 | __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, + | ^~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h:84:14: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 84 | if (__comp(__b, __c)) + | ~~~~~~^~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:86:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 86 | else if (__comp(__a, __c)) + | ~~~~~~^~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:91:22: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 91 | else if (__comp(__a, __c)) + | ~~~~~~^~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:93:22: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 93 | else if (__comp(__b, __c)) + | ~~~~~~^~~~~~~~~~ +In file included from /usr/include/c++/10/bits/stl_algo.h:61, + from /usr/include/c++/10/algorithm:62, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistl.hpp:180, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objects/general/Object_id_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objects/general/Object_id.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/feattable_edit.cpp:35: +/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = ncbi::objects::CSeq_id_Handle; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': +/usr/include/c++/10/bits/stl_heap.h:134:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 134 | __push_heap(_RandomAccessIterator __first, + | ^~~~~~~~~~~ +/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = ncbi::objects::CSeq_id_Handle; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': +/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, + | ^~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': +/usr/include/c++/10/bits/stl_heap.h:339:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 339 | __make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last, + | ^~~~~~~~~~~ +/usr/include/c++/10/bits/stl_heap.h:339:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +In file included from /usr/include/c++/10/algorithm:62, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistl.hpp:180, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objects/general/Object_id_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objects/general/Object_id.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/feattable_edit.cpp:35: +/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': +/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1945 | __introsort_loop(_RandomAccessIterator __first, + | ^~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h:1924:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1924 | std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 1925 | __comp); + | ~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:1924:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:1666:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1666 | std::__make_heap(__first, __middle, __comp); + | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h: In member function 'void ncbi::objects::edit::CFeatTableEdit::GenerateLocusTags()': +/usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1974 | std::__introsort_loop(__first, __last, + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ + 1975 | std::__lg(__last - __first) * 2, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 1976 | __comp); + | ~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1891 | std::__insertion_sort(__first, __last, __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/vector:67, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objects/general/Object_id_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objects/general/Object_id.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/feattable_edit.cpp:35: +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1198 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +producible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/link_cds_mrna.cpp -o link_cds_mrna.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/cds_fix.cpp -o cds_fix.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/loc_edit.cpp -o loc_edit.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/mail_report.cpp -o mail_report.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/feattable_edit.cpp -o feattable_edit.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/gaps_edit.cpp -o gaps_edit.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/source_edit.cpp -o source_edit.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDIn file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, + from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, + from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, + from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, + from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, + from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, + from /usr/include/boost/shared_ptr.hpp:17, + from /usr/include/boost/test/tools/assertion_result.hpp:21, + from /usr/include/boost/test/tools/old/impl.hpp:20, + from /usr/include/boost/test/test_tools.hpp:46, + from /usr/include/boost/test/unit_test.hpp:18, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp:51: +/usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' + 14 | BOOST_HEADER_DEPRECATED( "" ) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/rna_edit.cpp: In member function 'bool ncbi::objects::edit::CFindITSParser::IsLengthTooLarge(const string&, int, int, const std::vector&, const std::vector&, const std::vector&, int)': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/rna_edit.cpp:261:31: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] + 261 | for (int j = i + 1; j < spans.size(); j++) + | ~~^~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/parse_text_options.cpp: In function 'ncbi::SIZE_TYPE ncbi::objects::edit::FindWithOptions(const string&, const string&, ncbi::SIZE_TYPE, bool, bool)': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/parse_text_options.cpp:47:73: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] + 47 | pos = NStr::Find(str, pattern, pos, NPOS, NStr::eFirst, str_case); + | ^ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/edit/parse_text_options.hpp:34, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/parse_text_options.cpp:33: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:5308:11: note: declared here + 5308 | SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, + | ^~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp: In member function 'void seqdb::CSeqDBIsam_32bit_GI::test_method()': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp:4227:45: warning: integer overflow in expression of type 'long int' results in '-1073741824' [-Woverflow] + 4227 | const Uint4 big_gi = 3L * 1024L * 1024L * 1024L; // 3 "billion" + | ~~~~~~~~~~~~~~~~~~~^~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=seqdb_lmdb_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_lmdb_unit_test.cpp -o seqdb_lmdb_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie seqdb_lmdb_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -ltest_boost -lseqdb -lwritedb -lxobjutil -lblastdb -lxobjread -lvariation -lsubmit -lxlogging -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -llmdb -lpthread -ldl -ldl -lm -lpthread -o seqdb_lmdb_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_lmdb_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin +/bin/ln -f seqdb_lmdb_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/seqdb_lmdb_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' +cd app/dustmasker/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=dustmasker LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/dustmasker' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/dustmasker' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/alnmgr/alnvecprint.cpp: In member function 'void ncbi::objects::CAlnVecPrinter::PopsetStyle(int, ncbi::objects::CAlnVecPrinter::EAlgorithm)': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/alnmgr/alnvecprint.cpp:136:64: warning: suggest parentheses around '&&' within '||' [-Wparentheses] + 136 | if (left_seg < 0 || seg > right_seg && right_seg > 0) { + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/dustmasker' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/dustmasker' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/dustmasker' +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/alnmgr/alnvecprint.cpp: In member function 'void ncbi::objects::CAlnVecPrinter::ClustalStyle(int, ncbi::objects::CAlnVecPrinter::EAlgorithm)': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/alnmgr/alnvecprint.cpp:300:64: warning: suggest parentheses around '&&' within '||' [-Wparentheses] + 300 | if (left_seg < 0 || seg > right_seg && right_seg > 0) { + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/dustmasker TMPL=dustmasker -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/dbindex/makeindex/mkindex_app.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/dbindex/makeindex/main.cpp:47: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/dustmasker/dust_mask_app.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/dustmasker/main.cpp:34: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -29945,14 +30059,14 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/dbindex/makeindex/mkindex_app.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/dbindex/makeindex/main.cpp:47: +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/dustmasker/dust_mask_app.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/dustmasker/main.cpp:34: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/dbindex/makeindex/mkindex_app.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/dbindex/makeindex/main.cpp:47: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/dustmasker/dust_mask_app.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/dustmasker/main.cpp:34: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -29968,59 +30082,9 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/alnmgr/alnmap.cpp -o alnmap.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/alnmgr/alnmapprint.cpp -o alnmapprint.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/alnmgr/alnmatch.cpp -o alnmatch.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/alnmgr/alnmerger.cpp -o alnmerger.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/alnmgr/alnmix.cpp -o alnmix.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/alnmgr/alnpos_ci.cpp -o alnpos_ci.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/alnmgr/make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp -o bdbloader_rmt.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.cpp -o remote_blastdb_adapter.o -/bin/rm -f libncbi_xloader_blastdb_rmt.so .libncbi_xloader_blastdb_rmt.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libncbi_xloader_blastdb_rmt.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC bdbloader_rmt.o remote_blastdb_adapter.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lncbi_xloader_blastdb -lblast_services -lxobjmgr -lseq -lxncbi -ldl -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_blastdb_rmt.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -/bin/ln -f libncbi_xloader_blastdb_rmt.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libncbi_xloader_blastdb_rmt.so -/bin/ln -f .ncbi_xloader_blastdb_rmt.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.ncbi_xloader_blastdb_rmt.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' -cd objtools/simple/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xobjsimple UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/simple' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/simple' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/simple' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/simple' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/simple' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/simple TMPL=xobjsimple -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/alnmgr/alnsegments.cpp: In member function 'void ncbi::objects::CAlnMixSegments::FillUnalignedRegions()': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/alnmgr/alnsegments.cpp:311:27: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - 311 | if (plus && prev_start_plus_len < start || - | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/dbindex/makeindex' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -DNCBI_APP_BUILT_AS=makembindex /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/dbindex/makeindex/main.cpp -o main.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -DNCBI_APP_BUILT_AS=makembindex /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp -o mkindex_app.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie main.o mkindex_app.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lxalgoblastdbindex -lblast -lcomposition_adjustment -lseqdb -lblastdb -lxobjread -lvariation -lsubmit -lxlogging -lxobjutil -ltables -lxconnect -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -ldl -ldl -lm -lpthread -o makembindex -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f makembindex /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin -/bin/ln -f makembindex /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/makembindex -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/dbindex/makeindex' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/dbindex/makeindex' -cd algo/blast/unit_tests/seqdb_reader/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=seqdb_lmdb_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/seqdb_reader TMPL=seqdb_lmdb_unit_test -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_lmdb_unit_test.cpp:38: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/dustmasker/dust_mask_app.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/dustmasker/dust_mask_app.cpp:35: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -30111,14 +30175,14 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_lmdb_unit_test.cpp:38: +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/dustmasker/dust_mask_app.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/dustmasker/dust_mask_app.cpp:35: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_lmdb_unit_test.cpp:38: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/dustmasker/dust_mask_app.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/dustmasker/dust_mask_app.cpp:35: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -30134,38 +30198,31 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/simple' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/simple/simple_om.cpp -o simple_om.o -/bin/rm -f libxobjsimple.so .libxobjsimple.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libxobjsimple.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC simple_om.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lncbi_xloader_genbank -lxobjmgr -lseq -lxncbi -ldl -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjsimple.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -/bin/ln -f libxobjsimple.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libxobjsimple.so -/bin/ln -f .xobjsimple.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.xobjsimple.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/simple' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/simple' -cd algo/blast/unit_tests/seqdb_reader/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=seqdb_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/seqdb_reader TMPL=seqdb_unit_test -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp:51: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/remote_updater.cpp: In member function 'void ncbi::objects::edit::CRemoteUpdater::UpdateOrgFromTaxon(ncbi::objects::edit::CRemoteUpdater::FLogger, ncbi::objects::CSeq_entry_EditHandle&)': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/remote_updater.cpp:608:59: warning: 'void ncbi::objects::edit::CRemoteUpdater::UpdateOrgFromTaxon(ncbi::objects::edit::CRemoteUpdater::FLogger, ncbi::objects::CSeqdesc&)' is deprecated [-Wdeprecated-declarations] + 608 | UpdateOrgFromTaxon(logger, (CSeqdesc&)*desc_it); + | ^ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/remote_updater.cpp:298:6: note: declared here + 298 | void CRemoteUpdater::UpdateOrgFromTaxon(FLogger logger, CSeqdesc& obj) + | ^~~~~~~~~~~~~~ +alnsegments.cpp -o alnsegments.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/alnmgr/alnseq.cpp -o alnseq.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/alnmgr/alnvec.cpp -o alnvec.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/alnmgr/alnvec_iterator.cpp -o alnvec_iterator.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/alnmgr/alnvecprint.cpp -o alnvecprint.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/alnmgr/pairwise_aln.cpp -o pairwise_aln.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/alnmgr/sparse_aln.cpp -o sparse_aln.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LIn file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/external_annots.cpp:36: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -30181,9 +30238,9 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -30199,9 +30256,9 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -30217,9 +30274,9 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -30235,9 +30292,9 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -30247,20 +30304,18 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp:51: +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/external_annots.cpp:36: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp:51: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/external_annots.cpp:36: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -30270,82 +30325,65 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, - from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, - from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, - from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, - from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, - from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, - from /usr/include/boost/shared_ptr.hpp:17, - from /usr/include/boost/test/tools/assertion_result.hpp:21, - from /usr/include/boost/test/tools/old/impl.hpp:20, - from /usr/include/boost/test/test_tools.hpp:46, - from /usr/include/boost/test/unit_test.hpp:18, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_lmdb_unit_test.cpp:38: -/usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' - 14 | BOOST_HEADER_DEPRECATED( "" ) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/alnmgr/alnvecprint.cpp: In member function 'void ncbi::objects::CAlnVecPrinter::PopsetStyle(int, ncbi::objects::CAlnVecPrinter::EAlgorithm)': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/alnmgr/alnvecprint.cpp:136:64: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - 136 | if (left_seg < 0 || seg > right_seg && right_seg > 0) { - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/alnmgr/alnvecprint.cpp: In member function 'void ncbi::objects::CAlnVecPrinter::ClustalStyle(int, ncbi::objects::CAlnVecPrinter::EAlgorithm)': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/alnmgr/alnvecprint.cpp:300:64: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - 300 | if (left_seg < 0 || seg > right_seg && right_seg > 0) { - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ -In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, - from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, - from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, - from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, - from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, - from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, - from /usr/include/boost/shared_ptr.hpp:17, - from /usr/include/boost/test/tools/assertion_result.hpp:21, - from /usr/include/boost/test/tools/old/impl.hpp:20, - from /usr/include/boost/test/test_tools.hpp:46, - from /usr/include/boost/test/unit_test.hpp:18, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp:51: -/usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' - 14 | BOOST_HEADER_DEPRECATED( "" ) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp: In member function 'void seqdb::CSeqDBIsam_32bit_GI::test_method()': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp:4227:45: warning: integer overflow in expression of type 'long int' results in '-1073741824' [-Woverflow] - 4227 | const Uint4 big_gi = 3L * 1024L * 1024L * 1024L; // 3 "billion" - | ~~~~~~~~~~~~~~~~~~~^~~~~~~ -alnsegments.cpp -o alnsegments.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/alnmgr/alnseq.cpp -o alnseq.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/alnmgr/alnvec.cpp -o alnvec.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/alnmgr/alnvec_iterator.cpp -o alnvec_iterator.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/alnmgr/alnvecprint.cpp -o alnvecprint.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/alnmgr/pairwise_aln.cpp -o pairwise_aln.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/alnmgr/sparse_aln.cpp -o sparse_aln.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_Lmake[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=seqdb_lmdb_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_lmdb_unit_test.cpp -o seqdb_lmdb_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie seqdb_lmdb_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -ltest_boost -lseqdb -lwritedb -lxobjutil -lblastdb -lxobjread -lvariation -lsubmit -lxlogging -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -llmdb -lpthread -ldl -ldl -lm -lpthread -o seqdb_lmdb_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_lmdb_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin -/bin/ln -f seqdb_lmdb_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/seqdb_lmdb_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -cd app/dustmasker/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=dustmasker LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/dustmasker' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/dustmasker' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/dustmasker' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/dustmasker' -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/alnmgr/sparse_aln.cpp: In member function 'std::string& ncbi::CSparseAln::GetAlnSeqString(ncbi::IAlnExplorer::TNumrow, std::string&, const TSignedRange&, bool) const': +EBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/rna_edit.cpp -o rna_edit.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/remote_updater.cpp -o remote_updater.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/parse_text_options.cpp -o parse_text_options.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/publication_edit.cpp -o publication_edit.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/gap_trim.cpp -o gap_trim.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/external_annots.cpp -o external_annots.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/obj/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/alnmgr/sparse_aln.cpp: In member function 'std::string& ncbi::CSparseAln::GetAlnSeqString(ncbi::IAlnExplorer::TNumrow, std::string&, const TSignedRange&, bool) const': /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/alnmgr/sparse_aln.cpp:702:46: warning: comparison of integer expressions of different signedness: 'ncbi::COpenRange::position_type' {aka 'int'} and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 702 | if (translate && aln_range.GetLength() >= trim_from + trim_to) { | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/dustmasker/dust_mask_app.cpp:58: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] + 94 | objects::CFastaReader::fAllSeqIds | + | ^~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/dustmasker/dust_mask_app.cpp:41: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here + 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) + | ^~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/dustmasker/dust_mask_app.cpp:58: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] + 94 | objects::CFastaReader::fAllSeqIds | + | ^~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/dustmasker/dust_mask_app.cpp:41: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here + 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/feature_propagate.cpp: In member function 'ncbi::TSignedSeqPos ncbi::objects::edit::CFeaturePropagator::SeqPosToAlignPos(ncbi::TSignedSeqPos, ncbi::objects::CDense_seg_Base::TDim, bool, bool&, bool&)': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/feature_propagate.cpp:274:19: warning: unused variable 'length' [-Wunused-variable] + 274 | TSignedSeqPos length = bsh.GetBioseqLength(); + | ^~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/feature_propagate.cpp: In member function 'ncbi::TSignedSeqPos ncbi::objects::edit::CFeaturePropagator::AlignPosToSeqPos(ncbi::TSignedSeqPos, ncbi::objects::CDense_seg_Base::TDim, bool, bool&, bool&)': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/feature_propagate.cpp:373:31: warning: unused variable 'len' [-Wunused-variable] + 373 | TSignedSeqPos len = denseg.GetLens()[seg]; + | ^~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/feature_propagate.cpp:330:19: warning: unused variable 'length' [-Wunused-variable] + 330 | TSignedSeqPos length = bsh.GetBioseqLength(); + | ^~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/dustmasker' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -DNCBI_APP_BUILT_AS=dustmasker /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/dustmasker/main.cpp -o main.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -DNCBI_APP_BUILT_AS=dustmasker /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/dustmasker/dust_mask_app.cpp -o dust_mask_app.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie main.o dust_mask_app.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lxalgodustmask -lseqmasks_io -lxobjread -lvariation -lsubmit -lxlogging -lxobjutil -lseqdb -lblastdb -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -ldl -ldl -lm -lpthread -o dustmasker +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f dustmasker /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin +/bin/ln -f dustmasker /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/dustmasker make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/dustmasker' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/dustmasker TMPL=dustmasker -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/dustmasker' +cd objtools/blast/blastdb_format/unit_test/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=blastdb_format_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/blastdb_format/unit_test TMPL=blastdb_format_unit_test -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/dustmasker/dust_mask_app.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/dustmasker/dust_mask_app.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_formatter_unit_test.cpp:39: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -30436,14 +30474,14 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/dustmasker/dust_mask_app.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/dustmasker/dust_mask_app.cpp:35: +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_formatter_unit_test.cpp:39: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/dustmasker/dust_mask_app.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/dustmasker/dust_mask_app.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_formatter_unit_test.cpp:39: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -30460,8 +30498,8 @@ 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/dustmasker/dust_mask_app.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/dustmasker/main.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:39: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -30552,14 +30590,14 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/dustmasker/dust_mask_app.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/dustmasker/main.cpp:34: +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:39: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/dustmasker/dust_mask_app.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/dustmasker/main.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:39: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -30575,44 +30613,33 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/dustmasker/dust_mask_app.cpp:58: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] - 94 | objects::CFastaReader::fAllSeqIds | - | ^~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/dustmasker/dust_mask_app.cpp:41: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here - 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) - | ^~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/dustmasker/dust_mask_app.cpp:58: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] - 94 | objects::CFastaReader::fAllSeqIds | - | ^~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/dustmasker/dust_mask_app.cpp:41: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here - 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) - | ^~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/dustmasker' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -DNCBI_APP_BUILT_AS=dustmasker /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/dustmasker/main.cpp -o main.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -DNCBI_APP_BUILT_AS=dustmasker /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/dustmasker/dust_mask_app.cpp -o dust_mask_app.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie main.o dust_mask_app.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lxalgodustmask -lseqmasks_io -lxobjread -lvariation -lsubmit -lxlogging -lxobjutil -lseqdb -lblastdb -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -ldl -ldl -lm -lpthread -o dustmasker -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f dustmasker /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin -/bin/ln -f dustmasker /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/dustmasker -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/dustmasker' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/dustmasker' -cd objtools/blast/blastdb_format/unit_test/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=blastdb_format_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/blastdb_format/unit_test TMPL=blastdb_format_unit_test -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/text_object_description.cpp:336:15: warning: 'std::string ncbi::objects::edit::GetTextObjectDescription(const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&, const string&)' defined but not used [-Wunused-function] + 336 | static string GetTextObjectDescription(const CSeq_feat& seq_feat, CScope& scope, const string& product) + | ^~~~~~~~~~~~~~~~~~~~~~~~ +tools/edit/feature_propagate.cpp -o feature_propagate.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/text_object_description.cpp -o text_object_description.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/edit/seq_edit.cpp -o seq_edit.o +/bin/rm -f libxobjedit.so .libxobjedit.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libxobjedit.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC gene_utils.o seq_entry_edit.o promote.o autodef_with_tax.o field_handler.o apply_object.o string_constraint.o seqid_guesser.o dblink_field.o struc_comm_field.o text_desc_field.o gb_block_field.o link_cds_mrna.o cds_fix.o loc_edit.o mail_report.o feattable_edit.o gaps_edit.o source_edit.o rna_edit.o remote_updater.o parse_text_options.o publication_edit.o gap_trim.o external_annots.o feature_propagate.o text_object_description.o seq_edit.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lxobjutil -ltaxon3 -lvalid -lmlacli -lxlogging -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -ldl -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjedit.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib +/bin/ln -f libxobjedit.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libxobjedit.so +/bin/ln -f .xobjedit.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.xobjedit.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/edit' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/edit' +cd objtools/blast/seqdb_writer/unit_test/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=writedb_lmdb_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test TMPL=writedb_lmdb_unit_test -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_formatter_unit_test.cpp:39: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_lmdb_unit_test.cpp:36: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -30704,13 +30731,13 @@ 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_formatter_unit_test.cpp:39: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_lmdb_unit_test.cpp:36: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_formatter_unit_test.cpp:39: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_lmdb_unit_test.cpp:36: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -30726,9 +30753,74 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, + from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, + from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, + from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, + from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, + from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, + from /usr/include/boost/shared_ptr.hpp:17, + from /usr/include/boost/test/tools/assertion_result.hpp:21, + from /usr/include/boost/test/tools/old/impl.hpp:20, + from /usr/include/boost/test/test_tools.hpp:46, + from /usr/include/boost/test/unit_test.hpp:18, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_formatter_unit_test.cpp:39: +/usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' + 14 | BOOST_HEADER_DEPRECATED( "" ) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/boost/test/auto_unit_test.hpp:17:1: note: '#pragma message: This header is deprecated. Use instead.' + 17 | BOOST_HEADER_DEPRECATED( "" ) + | ^~~~~~~~~~~~~~~~~~~~~~~ +ARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/alnmgr/sparse_ci.cpp -o sparse_ci.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/alnmgr/alntext.cpp -o alntext.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/alnmgr/score_builder_base.cpp -o score_builder_base.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/alnmgr/aln_container.cpp -o aln_container.o +/bin/rm -f libxalnmgr.so .libxalnmgr.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libxalnmgr.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC aln_builders.o aln_converters.o aln_generators.o aln_seqid.o aln_serial.o alndiag.o alnmap.o alnmapprint.o alnmatch.o alnmerger.o alnmix.o alnpos_ci.o alnsegments.o alnseq.o alnvec.o alnvec_iterator.o alnvecprint.o pairwise_aln.o sparse_aln.o sparse_ci.o alntext.o score_builder_base.o aln_container.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lxobjutil -lxobjmgr -lseqset -lseq -lxser -ltables -lxncbi -ldl -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalnmgr.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib +/bin/ln -f libxalnmgr.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libxalnmgr.so +/bin/ln -f .xalnmgr.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.xalnmgr.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/alnmgr' +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:35: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:85:69: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] + 85 | CSeqFormatterConfig config = CSeqFormatterConfig()); + | ^ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here + 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:96:85: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] + 96 | void DumpAll(CSeqDB& blastdb, CSeqFormatterConfig config = CSeqFormatterConfig()); + | ^ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here + 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:85:68: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] + 85 | CSeqFormatterConfig config = CSeqFormatterConfig()); + | ^ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here + 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:96:84: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] + 96 | void DumpAll(CSeqDB& blastdb, CSeqFormatterConfig config = CSeqFormatterConfig()); + | ^ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here + 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { + | ^~~~~~~~~~~~~~~~~~~ +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/alnmgr' +cd objtools/blast/seqdb_writer/unit_test/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=writedb_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test TMPL=writedb_unit_test -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:39: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/criteria_unit_test.cpp:37: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -30819,14 +30911,12 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:39: +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/criteria_unit_test.cpp:37: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:39: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/criteria_unit_test.cpp:37: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -30842,40 +30932,34 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -ARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/alnmgr/sparse_ci.cpp -o sparse_ci.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/alnmgr/alntext.cpp -o alntext.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/alnmgr/score_builder_base.cpp -o score_builder_base.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/alnmgr/aln_container.cpp -o aln_container.o -/bin/rm -f libxalnmgr.so .libxalnmgr.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libxalnmgr.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC aln_builders.o aln_converters.o aln_generators.o aln_seqid.o aln_serial.o alndiag.o alnmap.o alnmapprint.o alnmatch.o alnmerger.o alnmix.o alnpos_ci.o alnsegments.o alnseq.o alnvec.o alnvec_iterator.o alnvecprint.o pairwise_aln.o sparse_aln.o sparse_ci.o alntext.o score_builder_base.o aln_container.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lxobjutil -lxobjmgr -lseqset -lseq -lxser -ltables -lxncbi -ldl -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalnmgr.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -/bin/ln -f libxalnmgr.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libxalnmgr.so -/bin/ln -f .xalnmgr.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.xalnmgr.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/alnmgr' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/alnmgr' -cd objtools/blast/seqdb_writer/unit_test/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=writedb_lmdb_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test TMPL=writedb_lmdb_unit_test -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, + from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, + from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, + from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, + from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, + from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, + from /usr/include/boost/shared_ptr.hpp:17, + from /usr/include/boost/test/tools/assertion_result.hpp:21, + from /usr/include/boost/test/tools/old/impl.hpp:20, + from /usr/include/boost/test/test_tools.hpp:46, + from /usr/include/boost/test/unit_test.hpp:18, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:39: +/usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' + 14 | BOOST_HEADER_DEPRECATED( "" ) + | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_lmdb_unit_test.cpp:36: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:46: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -30891,9 +30975,9 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -30909,9 +30993,9 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -30927,9 +31011,9 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -30945,9 +31029,9 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -30958,19 +31042,19 @@ 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_lmdb_unit_test.cpp:36: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:46: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_lmdb_unit_test.cpp:36: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:46: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -30980,66 +31064,6 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:35: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:85:69: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] - 85 | CSeqFormatterConfig config = CSeqFormatterConfig()); - | ^ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here - 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:96:85: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] - 96 | void DumpAll(CSeqDB& blastdb, CSeqFormatterConfig config = CSeqFormatterConfig()); - | ^ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here - 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:85:68: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] - 85 | CSeqFormatterConfig config = CSeqFormatterConfig()); - | ^ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here - 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:96:84: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] - 96 | void DumpAll(CSeqDB& blastdb, CSeqFormatterConfig config = CSeqFormatterConfig()); - | ^ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here - 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { - | ^~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, - from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, - from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, - from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, - from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, - from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, - from /usr/include/boost/shared_ptr.hpp:17, - from /usr/include/boost/test/tools/assertion_result.hpp:21, - from /usr/include/boost/test/tools/old/impl.hpp:20, - from /usr/include/boost/test/test_tools.hpp:46, - from /usr/include/boost/test/unit_test.hpp:18, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_formatter_unit_test.cpp:39: -/usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' - 14 | BOOST_HEADER_DEPRECATED( "" ) - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, - from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, - from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, - from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, - from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, - from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, - from /usr/include/boost/shared_ptr.hpp:17, - from /usr/include/boost/test/tools/assertion_result.hpp:21, - from /usr/include/boost/test/tools/old/impl.hpp:20, - from /usr/include/boost/test/test_tools.hpp:46, - from /usr/include/boost/test/unit_test.hpp:18, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:39: -/usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' - 14 | BOOST_HEADER_DEPRECATED( "" ) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/boost/test/auto_unit_test.hpp:17:1: note: '#pragma message: This header is deprecated. Use instead.' - 17 | BOOST_HEADER_DEPRECATED( "" ) - | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/test/auto_unit_test.hpp:17:1: note: '#pragma message: This header is deprecated. Use instead.' 17 | BOOST_HEADER_DEPRECATED( "" ) | ^~~~~~~~~~~~~~~~~~~~~~~ @@ -31204,10 +31228,106 @@ from /usr/include/boost/test/test_tools.hpp:46, from /usr/include/boost/test/unit_test.hpp:18, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/criteria_unit_test.cpp:41: +/usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' + 14 | BOOST_HEADER_DEPRECATED( "" ) + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, + from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, + from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, + from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, + from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, + from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, + from /usr/include/boost/shared_ptr.hpp:17, + from /usr/include/boost/test/tools/assertion_result.hpp:21, + from /usr/include/boost/test/tools/old/impl.hpp:20, + from /usr/include/boost/test/test_tools.hpp:46, + from /usr/include/boost/test/unit_test.hpp:18, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_lmdb_unit_test.cpp:36: /usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' 14 | BOOST_HEADER_DEPRECATED( "" ) | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, + from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, + from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, + from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, + from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, + from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, + from /usr/include/boost/shared_ptr.hpp:17, + from /usr/include/boost/test/tools/assertion_result.hpp:21, + from /usr/include/boost/test/tools/old/impl.hpp:20, + from /usr/include/boost/test/test_tools.hpp:46, + from /usr/include/boost/test/unit_test.hpp:18, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:46: +/usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' + 14 | BOOST_HEADER_DEPRECATED( "" ) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp: In function 'ncbi::CRef s_FastaStringToBioseq(const string&, bool)': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:598:44: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] + 598 | TFlags flags = (TFlags) (CFastaReader::fAllSeqIds | + | ^~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:39: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here + 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:598:44: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] + 598 | TFlags flags = (TFlags) (CFastaReader::fAllSeqIds | + | ^~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:39: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here + 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp: In member function 'void writedb::CWriteDB_SetTaxonomy::test_method()': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:2545:50: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] + 2545 | CFastaReader::fAssumeNuc | CFastaReader::fAllSeqIds; + | ^~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:39: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here + 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:2545:50: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] + 2545 | CFastaReader::fAssumeNuc | CFastaReader::fAllSeqIds; + | ^~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:39: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here + 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp: In member function 'void writedb::CWriteDB_SetTaxonomyFromMap::test_method()': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:2581:50: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] + 2581 | CFastaReader::fAssumeNuc | CFastaReader::fAllSeqIds; + | ^~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:39: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here + 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:2581:50: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] + 2581 | CFastaReader::fAssumeNuc | CFastaReader::fAllSeqIds; + | ^~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:39: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here + 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp: In member function 'void writedb::CWriteDB_SetTaxonomyFromMapLclIds::test_method()': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:2619:51: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] + 2619 | CFastaReader::fAssumeProt | CFastaReader::fAllSeqIds; + | ^~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:39: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here + 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:2619:51: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] + 2619 | CFastaReader::fAssumeProt | CFastaReader::fAllSeqIds; + | ^~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:39: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here + 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp: In member function 'void writedb::CSeqDBIsam_32bit_GI::test_method()': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:2853:45: warning: integer overflow in expression of type 'long int' results in '-1073741824' [-Woverflow] + 2853 | const Uint4 big_gi = 3L * 1024L * 1024L * 1024L; // 3 "billion" + | ~~~~~~~~~~~~~~~~~~~^~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blastdb_format_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp -o seq_writer_unit_test.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blastdb_format_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_formatter_unit_test.cpp -o seq_formatter_unit_test.o @@ -31216,37 +31336,22 @@ /bin/ln -f blastdb_format_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/blastdb_format_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' -cd objtools/blast/seqdb_writer/unit_test/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=writedb_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test TMPL=writedb_unit_test -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=writedb_lmdb_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_lmdb_unit_test.cpp -o writedb_lmdb_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie writedb_lmdb_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -ltest_boost -lwritedb -lseqdb -lxobjread -lvariation -lsubmit -lxlogging -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -ldl -ldl -lm -lpthread -o writedb_lmdb_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f writedb_lmdb_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin -/bin/ln -f writedb_lmdb_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/writedb_lmdb_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' -cd algo/winmask/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xalgowinmask UNIX_PROJ="" sources= configurables=configurables.null +cd algo/winmask/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xalgowinmask UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/winmask' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/winmask' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/winmask' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/winmask' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/winmask' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask TMPL=xalgowinmask -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/criteria_unit_test.cpp:37: +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask TMPL=xalgowinmask -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker_score.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker_score_min.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/seq_masker_score_min.cpp:37: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -31337,32 +31442,11 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/criteria_unit_test.cpp:37: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/criteria_unit_test.cpp:37: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:42, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker_score.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker_score_mean.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/seq_masker.cpp:41: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker_score_mean_glob.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp:34: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -31453,18 +31537,43 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:46: +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker_score.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker_score_mean.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/seq_masker_score_mean.cpp:35: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker_score.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker_score_mean.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/seq_masker.cpp:41: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -31477,12 +31586,15 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -31492,91 +31604,42 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:46: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:46: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker_score.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker_score_mean_glob.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp:34: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -31589,12 +31652,15 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -31607,12 +31673,9 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -31625,12 +31688,15 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -31643,12 +31709,9 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ + | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -31664,20 +31727,38 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker_score.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker_score_mean.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/seq_masker_score_mean.cpp:35: +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=writedb_lmdb_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_lmdb_unit_test.cpp -o writedb_lmdb_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie writedb_lmdb_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -ltest_boost -lwritedb -lseqdb -lxobjread -lvariation -lsubmit -lxlogging -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -ldl -ldl -lm -lpthread -o writedb_lmdb_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f writedb_lmdb_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin +/bin/ln -f writedb_lmdb_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/writedb_lmdb_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' +cd objtools/align_format/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=align_format UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/align_format' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/align_format' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/align_format' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/align_format' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/align_format' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format TMPL=align_format -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/showdefline.cpp:55: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -31693,9 +31774,9 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -31711,9 +31792,9 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -31729,9 +31810,9 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -31747,9 +31828,9 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -31759,35 +31840,37 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, - from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, - from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, - from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, - from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, - from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, - from /usr/include/boost/shared_ptr.hpp:17, - from /usr/include/boost/test/tools/assertion_result.hpp:21, - from /usr/include/boost/test/tools/old/impl.hpp:20, - from /usr/include/boost/test/test_tools.hpp:46, - from /usr/include/boost/test/unit_test.hpp:18, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/criteria_unit_test.cpp:41: -/usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' - 14 | BOOST_HEADER_DEPRECATED( "" ) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/seq_masker.cpp: In member function 'double ncbi::CSeqMasker::MergeAvg(std::__cxx11::list::iterator, const iterator&, Uint4) const': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/seq_masker.cpp:404:8: note: parameter passing for argument of type 'std::__cxx11::list::iterator' changed in GCC 7.1 - 404 | double CSeqMasker::MergeAvg( TMList::iterator mi, - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/seq_masker.cpp: In member function 'void ncbi::CSeqMasker::Merge(ncbi::CSeqMasker::TMList&, std::__cxx11::list::iterator, ncbi::CSeqMasker::TMList&, std::__cxx11::list::iterator&) const': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/seq_masker.cpp:418:6: note: parameter passing for argument of type 'std::__cxx11::list::iterator' changed in GCC 7.1 - 418 | void CSeqMasker::Merge( TMList & m, TMList::iterator mi, - | ^~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker_score.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker_score_min.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/seq_masker_score_min.cpp:37: +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/showdefline.cpp:55: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/showdefline.cpp:55: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/align_format_util.cpp:46: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -31878,134 +31961,16 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/seq_masker.cpp: In member function 'ncbi::CSeqMasker::TMaskList* ncbi::CSeqMasker::DoMask(const ncbi::objects::CSeqVector&, ncbi::TSeqPos, ncbi::TSeqPos) const': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/seq_masker.cpp:305:32: note: parameter passing for argument of type 'std::__cxx11::list::iterator' changed in GCC 7.1 - 305 | lavg = MergeAvg( k, tmp, unit_size ); - | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/seq_masker.cpp:311:32: note: parameter passing for argument of type 'std::__cxx11::list::iterator' changed in GCC 7.1 - 311 | ravg = MergeAvg( ii, j, unit_size ); - | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/seq_masker.cpp:328:42: note: parameter passing for argument of type 'std::__cxx11::list::iterator' changed in GCC 7.1 - 328 | k->avg = MergeAvg( k, --j, unit_size ); - | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/seq_masker.cpp:354:34: note: parameter passing for argument of type 'std::__cxx11::list::iterator' changed in GCC 7.1 - 354 | k->avg = MergeAvg( k, --j, unit_size ); - | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/seq_masker.cpp:386:34: note: parameter passing for argument of type 'std::__cxx11::list::iterator' changed in GCC 7.1 - 386 | k->avg = MergeAvg( k, j, unit_size ); - | ~~~~~~~~^~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, - from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, - from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, - from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, - from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, - from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, - from /usr/include/boost/shared_ptr.hpp:17, - from /usr/include/boost/test/tools/assertion_result.hpp:21, - from /usr/include/boost/test/tools/old/impl.hpp:20, - from /usr/include/boost/test/test_tools.hpp:46, - from /usr/include/boost/test/unit_test.hpp:18, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:46: -/usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' - 14 | BOOST_HEADER_DEPRECATED( "" ) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp: In function 'ncbi::CRef s_FastaStringToBioseq(const string&, bool)': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:598:44: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] - 598 | TFlags flags = (TFlags) (CFastaReader::fAllSeqIds | - | ^~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:39: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here - 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:598:44: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] - 598 | TFlags flags = (TFlags) (CFastaReader::fAllSeqIds | - | ^~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:39: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here - 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp: In member function 'void writedb::CWriteDB_SetTaxonomy::test_method()': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:2545:50: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] - 2545 | CFastaReader::fAssumeNuc | CFastaReader::fAllSeqIds; - | ^~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:39: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here - 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:2545:50: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] - 2545 | CFastaReader::fAssumeNuc | CFastaReader::fAllSeqIds; - | ^~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:39: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here - 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp: In member function 'void writedb::CWriteDB_SetTaxonomyFromMap::test_method()': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:2581:50: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] - 2581 | CFastaReader::fAssumeNuc | CFastaReader::fAllSeqIds; - | ^~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:39: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here - 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:2581:50: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] - 2581 | CFastaReader::fAssumeNuc | CFastaReader::fAllSeqIds; - | ^~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:39: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here - 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp: In member function 'void writedb::CWriteDB_SetTaxonomyFromMapLclIds::test_method()': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:2619:51: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] - 2619 | CFastaReader::fAssumeProt | CFastaReader::fAllSeqIds; - | ^~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:39: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here - 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:2619:51: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] - 2619 | CFastaReader::fAssumeProt | CFastaReader::fAllSeqIds; - | ^~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:39: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here - 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp: In member function 'void writedb::CSeqDBIsam_32bit_GI::test_method()': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:2853:45: warning: integer overflow in expression of type 'long int' results in '-1073741824' [-Woverflow] - 2853 | const Uint4 big_gi = 3L * 1024L * 1024L * 1024L; // 3 "billion" - | ~~~~~~~~~~~~~~~~~~~^~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/winmask' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/seq_masker.cpp -o seq_masker.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/seq_masker_score_mean.cpp -o seq_masker_score_mean.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp -o seq_masker_score_mean_glob.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/seq_masker_score_min.cpp -o seq_masker_score_min.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/seq_masker_util.cpp -o seq_masker_util.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/seq_masker_window.cpp -o seq_masker_window.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/shIn file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker_ostat.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker_ostat_ascii.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/seq_masker_ostat_factory.cpp:36: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/align_format_util.cpp:46: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/align_format_util.cpp:46: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -32018,48 +31983,44 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/showdefline.cpp:55: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/showdefline.cpp:55: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/align_format_util.cpp:46: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/align_format_util.cpp:46: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -32072,21 +32033,22 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker_ostat.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/seq_masker_ostat.cpp:35: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/showalign.cpp:77: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -32102,9 +32064,9 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -32120,9 +32082,9 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -32138,9 +32100,9 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -32156,9 +32118,9 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -32168,19 +32130,69 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker_ostat.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker_ostat_ascii.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/seq_masker_ostat_ascii.cpp:37: +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/showalign.cpp:77: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/showalign.cpp:77: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/showalign.cpp:77: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/showalign.cpp:77: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/tabular.cpp:39: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -32196,9 +32208,9 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -32214,9 +32226,9 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -32232,9 +32244,9 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -32250,9 +32262,9 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -32262,13 +32274,106 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ -are/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/seq_masker_window_ambig.cpp -o seq_masker_window_ambig.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/seq_masker_window_pattern.cpp -o seq_masker_window_pattern.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp -o seq_masker_window_pattern_ambig.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/seq_masker_ostat_factory.cpp -o seq_masker_ostat_factory.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/seq_masker_ostat.cpp -o seq_masker_ostat.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/seq_masker_ostat_ascii.cpp -o seq_masker_ostat_ascii.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2In file included from /usr/include/c++/10/vector:72, +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/tabular.cpp:39: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/tabular.cpp:39: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/tabular.cpp:39: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/tabular.cpp:39: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/winmask' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/seq_masker.cpp -o seq_masker.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/seq_masker_score_mean.cpp -o seq_masker_score_mean.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp -o seq_masker_score_mean_glob.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/seq_masker_score_min.cpp -o seq_masker_score_min.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/seq_masker_util.cpp -o seq_masker_util.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/seq_masker_window.cpp -o seq_masker_window.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/sh/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/seq_masker.cpp: In member function 'double ncbi::CSeqMasker::MergeAvg(std::__cxx11::list::iterator, const iterator&, Uint4) const': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/seq_masker.cpp:404:8: note: parameter passing for argument of type 'std::__cxx11::list::iterator' changed in GCC 7.1 + 404 | double CSeqMasker::MergeAvg( TMList::iterator mi, + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/seq_masker.cpp: In member function 'void ncbi::CSeqMasker::Merge(ncbi::CSeqMasker::TMList&, std::__cxx11::list::iterator, ncbi::CSeqMasker::TMList&, std::__cxx11::list::iterator&) const': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/seq_masker.cpp:418:6: note: parameter passing for argument of type 'std::__cxx11::list::iterator' changed in GCC 7.1 + 418 | void CSeqMasker::Merge( TMList & m, TMList::iterator mi, + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/seq_masker.cpp: In member function 'ncbi::CSeqMasker::TMaskList* ncbi::CSeqMasker::DoMask(const ncbi::objects::CSeqVector&, ncbi::TSeqPos, ncbi::TSeqPos) const': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/seq_masker.cpp:305:32: note: parameter passing for argument of type 'std::__cxx11::list::iterator' changed in GCC 7.1 + 305 | lavg = MergeAvg( k, tmp, unit_size ); + | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/seq_masker.cpp:311:32: note: parameter passing for argument of type 'std::__cxx11::list::iterator' changed in GCC 7.1 + 311 | ravg = MergeAvg( ii, j, unit_size ); + | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/seq_masker.cpp:328:42: note: parameter passing for argument of type 'std::__cxx11::list::iterator' changed in GCC 7.1 + 328 | k->avg = MergeAvg( k, --j, unit_size ); + | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/seq_masker.cpp:354:34: note: parameter passing for argument of type 'std::__cxx11::list::iterator' changed in GCC 7.1 + 354 | k->avg = MergeAvg( k, --j, unit_size ); + | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/seq_masker.cpp:386:34: note: parameter passing for argument of type 'std::__cxx11::list::iterator' changed in GCC 7.1 + 386 | k->avg = MergeAvg( k, j, unit_size ); + | ~~~~~~~~^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/showalign.cpp: In member function 'virtual void ncbi::align_format::CDisplaySeqalign::x_DisplayRowData(ncbi::align_format::CDisplaySeqalign::SAlnRowInfo*, ncbi::CNcbiOstream&)': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/showalign.cpp:1451:69: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] + 1451 | if(m_QueryAnchoredSetIndex != -1 && m_QueryAnchoredSetIndex != rowSetsCount) { + | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/showalign.cpp: In member function 'void ncbi::align_format::CDisplaySeqalign::DisplaySeqalign(ncbi::CNcbiOstream&)': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/showalign.cpp:2104:33: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] + 2104 | } catch (CException e){ + | ^ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/showalign.cpp: In function 'void ncbi::align_format::s_MakeDomainString(int, int, const string&, std::string&)': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/showalign.cpp:4446:49: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'unsigned int'} [-Wsign-compare] + 4446 | for (int i = actual_first_pos, j = 0; i < domain_string.size() - 1 && j < domain_name.size(); i ++, j ++){ + | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/showalign.cpp:4446:81: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'unsigned int'} [-Wsign-compare] + 4446 | for (int i = actual_first_pos, j = 0; i < domain_string.size() - 1 && j < domain_name.size(); i ++, j ++){ + | ~~^~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/vector:72, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, @@ -32287,9 +32392,9 @@ 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker_istat_ascii.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/seq_masker_istat_ascii.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker_ostat.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker_ostat_ascii.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/seq_masker_ostat_factory.cpp:36: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -32381,9 +32486,8 @@ 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker_istat_ascii.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/seq_masker_istat_factory.cpp:36: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker_ostat.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/seq_masker_ostat.cpp:35: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -32474,31 +32578,10 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:67, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:35: -/usr/include/c++/10/bits/stl_vector.h: In member function 'void writedb::BinaryListBuilder::test_method()': -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1198 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1198 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker_ostat.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker_ostat_bin.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/seq_masker_ostat_bin.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker_ostat_ascii.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/seq_masker_ostat_ascii.cpp:37: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -32589,10 +32672,16 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, +are/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/seq_masker_window_ambig.cpp -o seq_masker_window_ambig.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/seq_masker_window_pattern.cpp -o seq_masker_window_pattern.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp -o seq_masker_window_pattern_ambig.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/seq_masker_ostat_factory.cpp -o seq_masker_ostat_factory.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/seq_masker_ostat.cpp -o seq_masker_ostat.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/seq_masker_ostat_ascii.cpp -o seq_masker_ostat_ascii.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker_istat_bin.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/seq_masker_istat_bin.cpp:37: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker_istat_ascii.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/seq_masker_istat_ascii.cpp:35: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -32683,16 +32772,31 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ - -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/seq_masker_istat_ascii.cpp -o seq_masker_istat_ascii.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/seq_masker_uset_simple.cpp -o seq_masker_uset_simple.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/seq_masker_istat_factory.cpp -o seq_masker_istat_factory.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/seq_masker_ostat_bin.cpp -o seq_masker_ostat_bin.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/seq_masker_uset_array.cpp -o seq_masker_uset_array.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/seq_masker_istat_bin.cpp -o seq_masker_istat_bin.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmasIn file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker_ostat.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker_ostat_opt.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/seq_masker_ostat_opt.cpp:42: +In file included from /usr/include/c++/10/vector:67, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:35: +/usr/include/c++/10/bits/stl_vector.h: In member function 'void writedb::BinaryListBuilder::test_method()': +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1198 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1198 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker_istat_ascii.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/seq_masker_istat_factory.cpp:36: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -32783,17 +32887,10 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=seqdb_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp -o seqdb_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie seqdb_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -ltest_boost -lseqdb -lwritedb -lxobjutil -lblastdb -lxobjread -lvariation -lsubmit -lxlogging -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -llmdb -lpthread -ldl -ldl -lm -lpthread -o seqdb_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin -/bin/ln -f seqdb_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/seqdb_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker_ostat.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker_ostat_opt.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker_ostat_opt_ascii.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/seq_masker_ostat_opt_ascii.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker_ostat_bin.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/seq_masker_ostat_bin.cpp:35: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -32884,22 +32981,51 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -cd objtools/align_format/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=align_format UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/align_format' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/align_format' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/align_format' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/align_format' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/align_format' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format TMPL=align_format -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/align_format_util.cpp:46: +In file included from /usr/include/c++/10/vector:72, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbithr_conf.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimtx.hpp:62, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbireg.hpp:49, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/align_format/align_format_util.hpp:32, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/align_format_util.cpp:36: +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const ncbi::align_format::CAlignFormatUtil::SDbInfo&}; _Tp = ncbi::align_format::CAlignFormatUtil::SDbInfo; _Alloc = std::allocator]': +/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 426 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/vector:67, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbithr_conf.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimtx.hpp:62, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbireg.hpp:49, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/align_format/align_format_util.hpp:32, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/align_format_util.cpp:36: +/usr/include/c++/10/bits/stl_vector.h: In static member function 'static void ncbi::align_format::CAlignFormatUtil::FillScanModeBlastDbInfo(std::vector&, bool, int, Int8, std::string&)': +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1198 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_vector.h: In static member function 'static void ncbi::align_format::CAlignFormatUtil::GetBlastDbInfo(std::vector&, const string&, bool, int, bool)': +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1198 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1198 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker_istat_bin.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/seq_masker_istat_bin.cpp:37: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -32990,69 +33116,25 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/align_format_util.cpp:46: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/align_format_util.cpp:46: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/align_format_util.cpp:46: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/align_format_util.cpp:46: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/showdefline.cpp:55: + -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/seq_masker_istat_ascii.cpp -o seq_masker_istat_ascii.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/seq_masker_uset_simple.cpp -o seq_masker_uset_simple.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/seq_masker_istat_factory.cpp -o seq_masker_istat_factory.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/seq_masker_ostat_bin.cpp -o seq_masker_ostat_bin.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/seq_masker_uset_array.cpp -o seq_masker_uset_array.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/seq_masker_istat_bin.cpp -o seq_masker_istat_bin.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmasIn file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker_ostat.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker_ostat_opt.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/seq_masker_ostat_opt.cpp:42: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -33068,9 +33150,9 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -33086,9 +33168,9 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -33104,9 +33186,9 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -33122,9 +33204,9 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -33134,72 +33216,20 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/showdefline.cpp:55: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/showdefline.cpp:55: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/showdefline.cpp:55: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/showdefline.cpp:55: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/showalign.cpp:77: +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker_ostat.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker_ostat_opt.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker_ostat_opt_ascii.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/seq_masker_ostat_opt_ascii.cpp:35: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -33215,9 +33245,9 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -33233,9 +33263,9 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -33251,9 +33281,9 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -33269,9 +33299,9 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -33281,55 +33311,6 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/showalign.cpp:77: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/showalign.cpp:77: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/showalign.cpp:77: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/showalign.cpp:77: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:42, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker_istat_oascii.hpp:40, @@ -33807,66 +33788,17 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/showalign.cpp: In member function 'virtual void ncbi::align_format::CDisplaySeqalign::x_DisplayRowData(ncbi::align_format::CDisplaySeqalign::SAlnRowInfo*, ncbi::CNcbiOstream&)': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/showalign.cpp:1451:69: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] - 1451 | if(m_QueryAnchoredSetIndex != -1 && m_QueryAnchoredSetIndex != rowSetsCount) { - | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/showalign.cpp: In member function 'void ncbi::align_format::CDisplaySeqalign::DisplaySeqalign(ncbi::CNcbiOstream&)': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/showalign.cpp:2104:33: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] - 2104 | } catch (CException e){ - | ^ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/showalign.cpp: In function 'void ncbi::align_format::s_MakeDomainString(int, int, const string&, std::string&)': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/showalign.cpp:4446:49: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'unsigned int'} [-Wsign-compare] - 4446 | for (int i = actual_first_pos, j = 0; i < domain_string.size() - 1 && j < domain_name.size(); i ++, j ++){ - | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/showalign.cpp:4446:81: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'unsigned int'} [-Wsign-compare] - 4446 | for (int i = actual_first_pos, j = 0; i < domain_string.size() - 1 && j < domain_name.size(); i ++, j ++){ - | ~~^~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:72, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbithr_conf.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimtx.hpp:62, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbireg.hpp:49, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/align_format/align_format_util.hpp:32, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/align_format_util.cpp:36: -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const ncbi::align_format::CAlignFormatUtil::SDbInfo&}; _Tp = ncbi::align_format::CAlignFormatUtil::SDbInfo; _Alloc = std::allocator]': -/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 426 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:67, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbithr_conf.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimtx.hpp:62, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbireg.hpp:49, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/align_format/align_format_util.hpp:32, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/align_format_util.cpp:36: -/usr/include/c++/10/bits/stl_vector.h: In static member function 'static void ncbi::align_format::CAlignFormatUtil::FillScanModeBlastDbInfo(std::vector&, bool, int, Int8, std::string&)': -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1198 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_vector.h: In static member function 'static void ncbi::align_format::CAlignFormatUtil::GetBlastDbInfo(std::vector&, const string&, bool, int, bool)': -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1198 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1198 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker_ostat.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/win_mask_gen_counts.hpp:50, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/win_mask_gen_counts.cpp:53: +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/align_format' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/format_flags.cpp -o format_flags.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/align_format_util.cpp -o align_format_util.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/showdefline.cpp -o showdefline.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/showalign.cpp -o showalign.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/tabular.cpp -o tabular.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/vectorscreen.cpp -o vectorscreen.o +/usr/bin/g++ -std=gnu+In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/taxFormat.cpp:51: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -33957,14 +33889,16 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/taxFormat.cpp:51: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:37, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/tabular.cpp:39: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/taxFormat.cpp:51: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -33977,12 +33911,18 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/taxFormat.cpp:51: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/taxFormat.cpp:51: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -33995,12 +33935,16 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker_ostat.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/win_mask_gen_counts.hpp:50, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/win_mask_gen_counts.cpp:53: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -34013,12 +33957,12 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -34031,12 +33975,12 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -34049,21 +33993,12 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/tabular.cpp:39: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/tabular.cpp:39: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -34076,20 +34011,12 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/tabular.cpp:39: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/tabular.cpp:39: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -34102,9 +34029,27 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=seqdb_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp -o seqdb_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie seqdb_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -ltest_boost -lseqdb -lwritedb -lxobjutil -lblastdb -lxobjread -lvariation -lsubmit -lxlogging -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -llmdb -lpthread -ldl -ldl -lm -lpthread -o seqdb_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin +/bin/ln -f seqdb_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/seqdb_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' +cd objtools/cleanup/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=cleanup UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/cleanup' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/cleanup' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/cleanup' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/cleanup' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/cleanup' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/cleanup TMPL=cleanup -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/win_mask_gen_counts.hpp:47, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/win_mask_gen_counts.cpp:53: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] @@ -34153,6 +34098,10 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objmgr/util/sequence.hpp:289:8: note: declared here 289 | string GetTitle(const CBioseq_Handle& hnd, TGetTitleFlags flags = 0); | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/cleanup/cleanup.cpp: In static member function 'static bool ncbi::objects::CCleanup::x_HasShortIntron(const ncbi::objects::CSeq_loc&, size_t)': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/cleanup/cleanup.cpp:2889:68: warning: comparison of integer expressions of different signedness: 'long int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] + 2889 | if (abs((long int)this_start - (long int)prev_end) < min_len) { + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:42, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/seq_masker_istat.cpp:32: @@ -34246,14 +34195,45 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/align_format' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/format_flags.cpp -o format_flags.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/align_format_util.cpp -o align_format_util.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/showdefline.cpp -o showdefline.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/showalign.cpp -o showalign.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/tabular.cpp -o tabular.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/vectorscreen.cpp -o vectorscreen.o -/usr/bin/g++ -std=gnu+make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/cleanup/cleanup.cpp: In static member function 'static bool ncbi::objects::CCleanup::DecodeXMLMarkChanged(std::string&)': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/cleanup/cleanup.cpp:4168:21: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] + 4168 | idx < sizeof(transformations)/sizeof(transformations[0]); + | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/cleanup/cleanup.cpp: In static member function 'static bool ncbi::objects::CCleanup::ParseCodeBreak(const ncbi::objects::CSeq_feat&, ncbi::objects::CCdregion&, const ncbi::CTempString&, ncbi::objects::CScope&, ncbi::objects::IObjtoolsListener*)': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/cleanup/cleanup.cpp:4512:77: warning: 'static ncbi::CTempString ncbi::NStr::TruncateSpaces(ncbi::CTempString, ncbi::NStr::ETrunc)' is deprecated [-Wdeprecated-declarations] + 4512 | string pos = NStr::TruncateSpaces(str.substr(loc_pos, end_pos - loc_pos)); + | ^ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/cleanup/cleanup.cpp:33: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:2269:24: note: declared here + 2269 | static CTempString TruncateSpaces(const CTempString str, + | ^~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/win_mask_config.cpp:38: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] + 94 | objects::CFastaReader::fAllSeqIds | + | ^~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/win_mask_config.cpp:38: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here + 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) + | ^~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/win_mask_config.cpp:38: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] + 94 | objects::CFastaReader::fAllSeqIds | + | ^~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/win_mask_config.cpp:38: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here + 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/win_mask_config.cpp: In static member function 'static void ncbi::CWinMaskConfig::AddWinMaskArgs(ncbi::CArgDescriptions&, ncbi::CWinMaskConfig::EAppType, bool)': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/win_mask_config.cpp:181:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] + 181 | if(type == eAny || type >= eGenerateMasksWithDuster) + | ^~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/win_mask_config.cpp:185:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' + 185 | arg_desc.AddDefaultKey( "dust_level", "dust_level", + | ^~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=writedb_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp -o writedb_unit_test.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=writedb_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/criteria_unit_test.cpp -o criteria_unit_test.o /usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie writedb_unit_test.o criteria_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -ltest_boost -lwritedb -lseqdb -lxobjread -lvariation -lsubmit -lxlogging -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -ldl -ldl -lm -lpthread -o writedb_unit_test @@ -34261,30 +34241,29 @@ /bin/ln -f writedb_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/writedb_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' -cd objtools/cleanup/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=cleanup UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/cleanup' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/cleanup' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/cleanup' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/cleanup' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/cleanup' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/cleanup TMPL=cleanup -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +cd algo/blast/dbindex/makeindex/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=makeindex LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/dbindex/makeindex' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/dbindex/makeindex' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/dbindex/makeindex' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/dbindex/makeindex' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/dbindex/makeindex' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/dbindex/makeindex TMPL=makeindex -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/taxFormat.cpp:51: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/dbindex/makeindex/mkindex_app.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp:35: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -34300,9 +34279,9 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -34318,9 +34297,9 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -34336,9 +34315,9 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -34354,9 +34333,9 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -34366,22 +34345,20 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/taxFormat.cpp:51: +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/dbindex/makeindex/mkindex_app.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp:35: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/taxFormat.cpp:51: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/dbindex/makeindex/mkindex_app.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp:35: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -34391,72 +34368,129 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/taxFormat.cpp:51: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/taxFormat.cpp:51: +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/cleanup' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/cleanup/autogenerated_cleanup.cpp -o autogenerated_cleanup.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp -o autogenerated_extended_cleanup.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/cleanup/cleanup.cpp -o cleanup.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/cleanup/cleanup_utils.cpp -o cleanup_utils.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/cleanup/gene_qual_normalization.cpp -o gene_qual_normalization.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/cleanup/cleanup_user_object.cpp -o cleanup_user_object.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncIn file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/dbindex/makeindex/mkindex_app.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/dbindex/makeindex/main.cpp:47: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/win_mask_config.cpp:38: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] - 94 | objects::CFastaReader::fAllSeqIds | - | ^~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/win_mask_config.cpp:38: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here - 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) - | ^~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/win_mask_config.cpp:38: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] - 94 | objects::CFastaReader::fAllSeqIds | - | ^~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/win_mask_config.cpp:38: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here - 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/win_mask_config.cpp: In static member function 'static void ncbi::CWinMaskConfig::AddWinMaskArgs(ncbi::CArgDescriptions&, ncbi::CWinMaskConfig::EAppType, bool)': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/win_mask_config.cpp:181:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] - 181 | if(type == eAny || type >= eGenerateMasksWithDuster) - | ^~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/win_mask_config.cpp:185:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' - 185 | arg_desc.AddDefaultKey( "dust_level", "dust_level", - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/cleanup/cleanup.cpp: In static member function 'static bool ncbi::objects::CCleanup::x_HasShortIntron(const ncbi::objects::CSeq_loc&, size_t)': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/cleanup/cleanup.cpp:2889:68: warning: comparison of integer expressions of different signedness: 'long int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] - 2889 | if (abs((long int)this_start - (long int)prev_end) < min_len) { - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/cleanup/cleanup.cpp: In static member function 'static bool ncbi::objects::CCleanup::DecodeXMLMarkChanged(std::string&)': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/cleanup/cleanup.cpp:4168:21: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] - 4168 | idx < sizeof(transformations)/sizeof(transformations[0]); - | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/cleanup/cleanup.cpp: In static member function 'static bool ncbi::objects::CCleanup::ParseCodeBreak(const ncbi::objects::CSeq_feat&, ncbi::objects::CCdregion&, const ncbi::CTempString&, ncbi::objects::CScope&, ncbi::objects::IObjtoolsListener*)': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/cleanup/cleanup.cpp:4512:77: warning: 'static ncbi::CTempString ncbi::NStr::TruncateSpaces(ncbi::CTempString, ncbi::NStr::ETrunc)' is deprecated [-Wdeprecated-declarations] - 4512 | string pos = NStr::TruncateSpaces(str.substr(loc_pos, end_pos - loc_pos)); +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/dbindex/makeindex/mkindex_app.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/dbindex/makeindex/main.cpp:47: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/cleanup/cleanup.cpp:33: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:2269:24: note: declared here - 2269 | static CTempString TruncateSpaces(const CTempString str, - | ^~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/dbindex/makeindex/mkindex_app.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/dbindex/makeindex/main.cpp:47: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ =/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/win_mask_counts_converter.cpp -o win_mask_counts_converter.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/win_mask_dup_table.cpp -o win_mask_dup_table.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/winmask/win_mask_gen_counts.cpp -o win_mask_gen_counts.o @@ -34470,24 +34504,30 @@ /bin/ln -f .xalgowinmask.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.xalgowinmask.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/winmask' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/winmask' -cd algo/blast/api/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xblast UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xblast UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/api' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api TMPL=xblast -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/blast_options_local_priv.cpp: In member function 'bool ncbi::blast::CBlastOptionsLocal::Validate() const': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/blast_options_local_priv.cpp:387:5: warning: this 'else' clause does not guard... [-Wmisleading-indentation] - 387 | else - | ^~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/blast_options_local_priv.cpp:396:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' - 396 | return true; - | ^~~~~~ +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api TMPL=xblast -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/cleanup/cleanup_user_object.cpp: In static member function 'static bool ncbi::objects::CCleanup::s_AddNumToUserField(ncbi::objects::CUser_field&)': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/cleanup/cleanup_user_object.cpp:369:53: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CUser_field_Base::TNum' {aka 'int'} and 'std::vector >::size_type' {aka 'unsigned int'} [-Wsign-compare] + 369 | if (!field.IsSetNum() || field.GetNum() != field.GetData().GetStrs().size()) { + | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/cleanup/cleanup_user_object.cpp:375:53: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CUser_field_Base::TNum' {aka 'int'} and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] + 375 | if (!field.IsSetNum() || field.GetNum() != field.GetData().GetInts().size()) { + | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/cleanup/cleanup_user_object.cpp:381:53: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CUser_field_Base::TNum' {aka 'int'} and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] + 381 | if (!field.IsSetNum() || field.GetNum() != field.GetData().GetReals().size()) { + | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/cleanup/cleanup_user_object.cpp:387:53: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CUser_field_Base::TNum' {aka 'int'} and 'std::vector*>::size_type' {aka 'unsigned int'} [-Wsign-compare] + 387 | if (!field.IsSetNum() || field.GetNum() != field.GetData().GetOss().size()) { + | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/seqalignfilter.cpp -o seqalignfilter.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/taxFormat.cpp -o taxFormat.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/aln_printer.cpp -o aln_printer.o @@ -34498,17 +34538,17 @@ /bin/ln -f .align_format.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.align_format.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/align_format' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/align_format' -cd app/winmasker/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=winmasker LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd app/winmasker/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=winmasker LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/winmasker' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/winmasker' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/winmasker' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/winmasker' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/winmasker' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/winmasker TMPL=winmasker -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/winmasker TMPL=winmasker -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/winmasker/win_mask_app.hpp:36, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/winmasker/main.cpp:34: @@ -34838,6 +34878,13 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/blast_options_local_priv.cpp: In member function 'bool ncbi::blast::CBlastOptionsLocal::Validate() const': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/blast_options_local_priv.cpp:387:5: warning: this 'else' clause does not guard... [-Wmisleading-indentation] + 387 | else + | ^~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/blast_options_local_priv.cpp:396:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' + 396 | return true; + | ^~~~~~ In file included from /usr/include/c++/10/vector:72, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, @@ -34977,99 +35024,37 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/cleanup' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/cleanup/autogenerated_cleanup.cpp -o autogenerated_cleanup.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp -o autogenerated_extended_cleanup.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/cleanup/cleanup.cpp -o cleanup.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/cleanup/cleanup_utils.cpp -o cleanup_utils.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/cleanup/gene_qual_normalization.cpp -o gene_qual_normalization.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/cleanup/cleanup_user_object.cpp -o cleanup_user_object.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/nc/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/cleanup/cleanup_user_object.cpp: In static member function 'static bool ncbi::objects::CCleanup::s_AddNumToUserField(ncbi::objects::CUser_field&)': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/cleanup/cleanup_user_object.cpp:369:53: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CUser_field_Base::TNum' {aka 'int'} and 'std::vector >::size_type' {aka 'unsigned int'} [-Wsign-compare] - 369 | if (!field.IsSetNum() || field.GetNum() != field.GetData().GetStrs().size()) { - | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/cleanup/cleanup_user_object.cpp:375:53: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CUser_field_Base::TNum' {aka 'int'} and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] - 375 | if (!field.IsSetNum() || field.GetNum() != field.GetData().GetInts().size()) { - | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/cleanup/cleanup_user_object.cpp:381:53: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CUser_field_Base::TNum' {aka 'int'} and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] - 381 | if (!field.IsSetNum() || field.GetNum() != field.GetData().GetReals().size()) { - | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/cleanup/cleanup_user_object.cpp:387:53: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CUser_field_Base::TNum' {aka 'int'} and 'std::vector*>::size_type' {aka 'unsigned int'} [-Wsign-compare] - 387 | if (!field.IsSetNum() || field.GetNum() != field.GetData().GetOss().size()) { - | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/winmasker/win_mask_app.cpp:52: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] - 94 | objects::CFastaReader::fAllSeqIds | - | ^~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/winmasker/win_mask_app.cpp:35: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here - 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) - | ^~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/winmasker/win_mask_app.cpp:52: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] - 94 | objects::CFastaReader::fAllSeqIds | - | ^~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/winmasker/win_mask_app.cpp:35: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here - 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) - | ^~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/blast_aux.cpp -o blast_aux.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/blast_options_cxx.cpp -o blast_options_cxx.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/blast_options_local_priv.cpp -o blast_options_local_priv.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/blast_options_builder.cpp -o blast_options_builder.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/blast_setup_cxx.cpp -o blast_setup_cxx.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/blast_seqalign.cpp -o blast_seqalign.o -/usr/bin/g++ -std=gnu++14 -c -Wall -W/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/blast_options_handle.cpp: In member function 'char* ncbi::blast::CBlastOptionsHandle::GetFilterString() const': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/blast_options_handle.cpp:100:36: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations] - 100 | return m_Opts->GetFilterString(); /* NCBI_FAKE_WARNING */ - | ^ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/blast/api/blast_options_handle.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/blast_options_handle.cpp:36: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/blast/api/blast_options.hpp:178:27: note: declared here - 178 | NCBI_DEPRECATED char* GetFilterString() const; - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/blast_options_handle.cpp: In member function 'void ncbi::blast::CBlastOptionsHandle::SetFilterString(const char*, bool)': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/blast_options_handle.cpp:106:37: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated [-Wdeprecated-declarations] - 106 | m_Opts->SetFilterString(f, clear); /* NCBI_FAKE_WARNING */ - | ^ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/blast/api/blast_options_handle.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/blast_options_handle.cpp:36: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/blast/api/blast_options.hpp:180:26: note: declared here - 180 | NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); - | ^~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/winmasker' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -DNCBI_APP_BUILT_AS=windowmasker /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/winmasker/main.cpp -o main.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -DNCBI_APP_BUILT_AS=windowmasker /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/winmasker/win_mask_app.cpp -o win_mask_app.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -DNCBI_APP_BUILT_AS=windowmasker /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/winmasker/win_mask_sdust_masker.cpp -o win_mask_sdust_masker.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie main.o win_mask_app.o win_mask_sdust_masker.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lxalgowinmask -lxalgodustmask -lblast -lcomposition_adjustment -lseqmasks_io -lseqdb -lblastdb -ltables -lxobjread -lvariation -lsubmit -lxlogging -lxobjutil -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -ldl -ldl -lm -lpthread -o windowmasker -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f windowmasker /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin -/bin/ln -f windowmasker /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/windowmasker -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/winmasker' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/winmasker' -cd objtools/align_format/unit_test/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=align_format_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/dbindex/makeindex' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -DNCBI_APP_BUILT_AS=makembindex /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/dbindex/makeindex/main.cpp -o main.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -DNCBI_APP_BUILT_AS=makembindex /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp -o mkindex_app.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie main.o mkindex_app.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lxalgoblastdbindex -lblast -lcomposition_adjustment -lseqdb -lblastdb -lxobjread -lvariation -lsubmit -lxlogging -lxobjutil -ltables -lxconnect -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -ldl -ldl -lm -lpthread -o makembindex +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f makembindex /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin +/bin/ln -f makembindex /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/makembindex +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/dbindex/makeindex' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/dbindex/makeindex' +cd objtools/align_format/unit_test/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=align_format_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/align_format/unit_test' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/align_format/unit_test' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/align_format/unit_test' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/align_format/unit_test' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/align_format/unit_test' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/unit_test TMPL=align_format_unit_test -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/unit_test TMPL=align_format_unit_test -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/unit_test/showalign_unit_test.cpp:48: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/unit_test/vectorscreen_unit_test.cpp:35: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -35085,9 +35070,9 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -35103,9 +35088,9 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -35121,9 +35106,9 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -35139,9 +35124,9 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -35152,19 +35137,19 @@ 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/unit_test/showalign_unit_test.cpp:48: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/unit_test/vectorscreen_unit_test.cpp:35: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/unit_test/showalign_unit_test.cpp:48: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/unit_test/vectorscreen_unit_test.cpp:35: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -35324,7 +35309,7 @@ | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/unit_test/blast_test_util.cpp:60: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/unit_test/showalign_unit_test.cpp:48: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -35416,13 +35401,13 @@ 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/unit_test/blast_test_util.cpp:60: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/unit_test/showalign_unit_test.cpp:48: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/unit_test/blast_test_util.cpp:60: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/unit_test/showalign_unit_test.cpp:48: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -35438,95 +35423,18 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/cleanup/capitalization_string.cpp: In function 'void ncbi::objects::CapitalizeAfterApostrophe(std::string&)': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/cleanup/capitalization_string.cpp:912:25: warning: comparison of integer expressions of different signedness: 'const int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] - 912 | if (rslt[0] != start) - | ~~~~~~~~^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/cleanup/capitalization_string.cpp: In function 'void ncbi::objects::FixAffiliationShortWordsInElement(std::string&)': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/cleanup/capitalization_string.cpp:951:29: warning: comparison of integer expressions of different signedness: 'const int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] - 951 | if (rslt[0] != start) - | ~~~~~~~~^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/cleanup/capitalization_string.cpp: In function 'void ncbi::objects::FixOrdinalNumbers(std::string&)': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/cleanup/capitalization_string.cpp:978:29: warning: comparison of integer expressions of different signedness: 'const int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] - 978 | if (rslt[0] != start) - | ~~~~~~~~^~~~~~~~ -In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, - from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, - from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, - from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, - from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, - from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, - from /usr/include/boost/shared_ptr.hpp:17, - from /usr/include/boost/test/tools/assertion_result.hpp:21, - from /usr/include/boost/test/tools/old/impl.hpp:20, - from /usr/include/boost/test/test_tools.hpp:46, - from /usr/include/boost/test/unit_test.hpp:18, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/unit_test/showalign_unit_test.cpp:48: -/usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' - 14 | BOOST_HEADER_DEPRECATED( "" ) - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, - from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, - from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, - from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, - from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, - from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, - from /usr/include/boost/shared_ptr.hpp:17, - from /usr/include/boost/test/tools/assertion_result.hpp:21, - from /usr/include/boost/test/tools/old/impl.hpp:20, - from /usr/include/boost/test/test_tools.hpp:46, - from /usr/include/boost/test/unit_test.hpp:18, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/unit_test/blast_test_util.cpp:60: -/usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' - 14 | BOOST_HEADER_DEPRECATED( "" ) - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, - from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, - from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, - from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, - from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, - from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, - from /usr/include/boost/shared_ptr.hpp:17, - from /usr/include/boost/test/tools/assertion_result.hpp:21, - from /usr/include/boost/test/tools/old/impl.hpp:20, - from /usr/include/boost/test/test_tools.hpp:46, - from /usr/include/boost/test/unit_test.hpp:18, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/unit_test/showdefline_unit_test.cpp:48: -/usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' - 14 | BOOST_HEADER_DEPRECATED( "" ) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/boost/test/auto_unit_test.hpp:17:1: note: '#pragma message: This header is deprecated. Use instead.' - 17 | BOOST_HEADER_DEPRECATED( "" ) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' - 14 | BOOST_HEADER_DEPRECATED( "" ) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/cleanup/newcleanupp.cpp: In member function 'void ncbi::objects::CNewCleanup_imp::x_RemoveFlankingQuotes(std::string&)': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/cleanup/newcleanupp.cpp:5850:22: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] - 5850 | for( ; first_pos <= last_pos ; ++first_pos, --last_pos ) { - | ~~~~~~~~~~^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/cleanup/newcleanupp.cpp:5864:19: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] - 5864 | if( first_pos > last_pos ) { - | ~~~~~~~~~~^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/cleanup/newcleanupp.cpp: In member function 'void ncbi::objects::CNewCleanup_imp::RnarefGenBC(ncbi::objects::CRNA_ref&)': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/cleanup/newcleanupp.cpp:7113:10: warning: unused variable 'changed' [-Wunused-variable] - 7113 | bool changed = false; - | ^~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/unit_test/vectorscreen_unit_test.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/unit_test/blast_test_util.cpp:60: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -35542,9 +35450,9 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -35560,9 +35468,9 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -35578,9 +35486,9 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -35596,9 +35504,9 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -35609,19 +35517,19 @@ 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/unit_test/vectorscreen_unit_test.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/unit_test/blast_test_util.cpp:60: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/unit_test/vectorscreen_unit_test.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/unit_test/blast_test_util.cpp:60: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -35631,13 +35539,156 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/align_format/unit_test' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=align_format_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/unit_test/showdefline_unit_test.cpp -o showdefline_unit_test.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=align_format_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/unit_test/showalign_unit_test.cpp -o showalign_unit_test.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=align_format_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/unit_test/blast_test_util.cpp -o blast_test_util.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=align_format_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/unit_test/vectorscreen_unit_test.cpp -o vectorscreen_unit_test.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=align_format_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/unit_test/tabularinof_unit_test.cpp -o tabularinof_unit_test.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOUIn file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/winmasker/win_mask_app.cpp:52: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] + 94 | objects::CFastaReader::fAllSeqIds | + | ^~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/winmasker/win_mask_app.cpp:35: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here + 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) + | ^~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/winmasker/win_mask_app.cpp:52: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] + 94 | objects::CFastaReader::fAllSeqIds | + | ^~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/winmasker/win_mask_app.cpp:35: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here + 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/cleanup/capitalization_string.cpp: In function 'void ncbi::objects::CapitalizeAfterApostrophe(std::string&)': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/cleanup/capitalization_string.cpp:912:25: warning: comparison of integer expressions of different signedness: 'const int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] + 912 | if (rslt[0] != start) + | ~~~~~~~~^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/cleanup/capitalization_string.cpp: In function 'void ncbi::objects::FixAffiliationShortWordsInElement(std::string&)': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/cleanup/capitalization_string.cpp:951:29: warning: comparison of integer expressions of different signedness: 'const int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] + 951 | if (rslt[0] != start) + | ~~~~~~~~^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/cleanup/capitalization_string.cpp: In function 'void ncbi::objects::FixOrdinalNumbers(std::string&)': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/cleanup/capitalization_string.cpp:978:29: warning: comparison of integer expressions of different signedness: 'const int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] + 978 | if (rslt[0] != start) + | ~~~~~~~~^~~~~~~~ +In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, + from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, + from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, + from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, + from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, + from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, + from /usr/include/boost/shared_ptr.hpp:17, + from /usr/include/boost/test/tools/assertion_result.hpp:21, + from /usr/include/boost/test/tools/old/impl.hpp:20, + from /usr/include/boost/test/test_tools.hpp:46, + from /usr/include/boost/test/unit_test.hpp:18, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/unit_test/vectorscreen_unit_test.cpp:35: +/usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' + 14 | BOOST_HEADER_DEPRECATED( "" ) + | ^~~~~~~~~~~~~~~~~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/blast_aux.cpp -o blast_aux.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/blast_options_cxx.cpp -o blast_options_cxx.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/blast_options_local_priv.cpp -o blast_options_local_priv.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/blast_options_builder.cpp -o blast_options_builder.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/blast_setup_cxx.cpp -o blast_setup_cxx.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/blast_seqalign.cpp -o blast_seqalign.o +/usr/bin/g++ -std=gnu++14 -c -Wall -W/usr/include/boost/test/auto_unit_test.hpp:17:1: note: '#pragma message: This header is deprecated. Use instead.' + 17 | BOOST_HEADER_DEPRECATED( "" ) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' + 14 | BOOST_HEADER_DEPRECATED( "" ) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/cleanup/newcleanupp.cpp: In member function 'void ncbi::objects::CNewCleanup_imp::x_RemoveFlankingQuotes(std::string&)': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/cleanup/newcleanupp.cpp:5850:22: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] + 5850 | for( ; first_pos <= last_pos ; ++first_pos, --last_pos ) { + | ~~~~~~~~~~^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/cleanup/newcleanupp.cpp:5864:19: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] + 5864 | if( first_pos > last_pos ) { + | ~~~~~~~~~~^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/cleanup/newcleanupp.cpp: In member function 'void ncbi::objects::CNewCleanup_imp::RnarefGenBC(ncbi::objects::CRNA_ref&)': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/cleanup/newcleanupp.cpp:7113:10: warning: unused variable 'changed' [-Wunused-variable] + 7113 | bool changed = false; + | ^~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/winmasker' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -DNCBI_APP_BUILT_AS=windowmasker /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/winmasker/main.cpp -o main.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -DNCBI_APP_BUILT_AS=windowmasker /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/winmasker/win_mask_app.cpp -o win_mask_app.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -DNCBI_APP_BUILT_AS=windowmasker /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/winmasker/win_mask_sdust_masker.cpp -o win_mask_sdust_masker.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie main.o win_mask_app.o win_mask_sdust_masker.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lxalgowinmask -lxalgodustmask -lblast -lcomposition_adjustment -lseqmasks_io -lseqdb -lblastdb -ltables -lxobjread -lvariation -lsubmit -lxlogging -lxobjutil -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -ldl -ldl -lm -lpthread -o windowmasker +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f windowmasker /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin +/bin/ln -f windowmasker /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/windowmasker +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/winmasker' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/winmasker' +In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, + from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, + from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, + from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, + from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, + from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, + from /usr/include/boost/shared_ptr.hpp:17, + from /usr/include/boost/test/tools/assertion_result.hpp:21, + from /usr/include/boost/test/tools/old/impl.hpp:20, + from /usr/include/boost/test/test_tools.hpp:46, + from /usr/include/boost/test/unit_test.hpp:18, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/unit_test/showalign_unit_test.cpp:48: +/usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' + 14 | BOOST_HEADER_DEPRECATED( "" ) + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, + from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, + from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, + from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, + from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, + from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, + from /usr/include/boost/shared_ptr.hpp:17, + from /usr/include/boost/test/tools/assertion_result.hpp:21, + from /usr/include/boost/test/tools/old/impl.hpp:20, + from /usr/include/boost/test/test_tools.hpp:46, + from /usr/include/boost/test/unit_test.hpp:18, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/unit_test/showdefline_unit_test.cpp:48: +/usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' + 14 | BOOST_HEADER_DEPRECATED( "" ) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/boost/test/auto_unit_test.hpp:17:1: note: '#pragma message: This header is deprecated. Use instead.' + 17 | BOOST_HEADER_DEPRECATED( "" ) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' + 14 | BOOST_HEADER_DEPRECATED( "" ) + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, + from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, + from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, + from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, + from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, + from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, + from /usr/include/boost/shared_ptr.hpp:17, + from /usr/include/boost/test/tools/assertion_result.hpp:21, + from /usr/include/boost/test/tools/old/impl.hpp:20, + from /usr/include/boost/test/test_tools.hpp:46, + from /usr/include/boost/test/unit_test.hpp:18, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/unit_test/blast_test_util.cpp:60: +/usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' + 14 | BOOST_HEADER_DEPRECATED( "" ) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/blast_options_handle.cpp: In member function 'char* ncbi::blast::CBlastOptionsHandle::GetFilterString() const': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/blast_options_handle.cpp:100:36: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations] + 100 | return m_Opts->GetFilterString(); /* NCBI_FAKE_WARNING */ + | ^ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/blast/api/blast_options_handle.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/blast_options_handle.cpp:36: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/blast/api/blast_options.hpp:178:27: note: declared here + 178 | NCBI_DEPRECATED char* GetFilterString() const; + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/blast_options_handle.cpp: In member function 'void ncbi::blast::CBlastOptionsHandle::SetFilterString(const char*, bool)': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/blast_options_handle.cpp:106:37: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated [-Wdeprecated-declarations] + 106 | m_Opts->SetFilterString(f, clear); /* NCBI_FAKE_WARNING */ + | ^ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/blast/api/blast_options_handle.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/blast_options_handle.cpp:36: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/blast/api/blast_options.hpp:180:26: note: declared here + 180 | NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); + | ^~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/unit_test/tabularinof_unit_test.cpp:35: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -35753,7 +35804,13 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/align_format/unit_test' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=align_format_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/unit_test/showdefline_unit_test.cpp -o showdefline_unit_test.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=align_format_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/unit_test/showalign_unit_test.cpp -o showalign_unit_test.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=align_format_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/unit_test/blast_test_util.cpp -o blast_test_util.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=align_format_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/unit_test/vectorscreen_unit_test.cpp -o vectorscreen_unit_test.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=align_format_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/unit_test/tabularinof_unit_test.cpp -o tabularinof_unit_test.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOUIn file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/unit_test/aln_printer_unit_test.cpp:51: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -35881,7 +35938,7 @@ from /usr/include/boost/test/test_tools.hpp:46, from /usr/include/boost/test/unit_test.hpp:18, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/unit_test/vectorscreen_unit_test.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/unit_test/tabularinof_unit_test.cpp:35: /usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' 14 | BOOST_HEADER_DEPRECATED( "" ) | ^~~~~~~~~~~~~~~~~~~~~~~ @@ -35909,28 +35966,6 @@ from /usr/include/boost/test/test_tools.hpp:46, from /usr/include/boost/test/unit_test.hpp:18, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/unit_test/tabularinof_unit_test.cpp:35: -/usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' - 14 | BOOST_HEADER_DEPRECATED( "" ) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/boost/test/auto_unit_test.hpp:17:1: note: '#pragma message: This header is deprecated. Use instead.' - 17 | BOOST_HEADER_DEPRECATED( "" ) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' - 14 | BOOST_HEADER_DEPRECATED( "" ) - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, - from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, - from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, - from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, - from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, - from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, - from /usr/include/boost/shared_ptr.hpp:17, - from /usr/include/boost/test/tools/assertion_result.hpp:21, - from /usr/include/boost/test/tools/old/impl.hpp:20, - from /usr/include/boost/test/test_tools.hpp:46, - from /usr/include/boost/test/unit_test.hpp:18, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/align_format/unit_test/aln_printer_unit_test.cpp:51: /usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' 14 | BOOST_HEADER_DEPRECATED( "" ) @@ -35966,17 +36001,17 @@ /bin/ln -f .xcleanup.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.xcleanup.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/cleanup' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/cleanup' -cd objtools/format/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xformat UNIX_PROJ="" sources= configurables=configurables.null +cd objtools/format/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xformat UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/format' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/format' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/format' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/format' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/format' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/format TMPL=xformat -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/format TMPL=xformat -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. d/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/seqsrc_multiseq.cpp -o seqsrc_multiseq.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/seqsrc_seqdb.cpp -o seqsrc_seqdb.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/seqsrc_query_factory.cpp -o seqsrc_query_factory.o @@ -36001,14 +36036,18 @@ /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/psiblast_impl.cpp -o psiblast_impl.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/psiblast_iteration.cpp -o psiblast_iteration.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/psi_pssm_input.cpp -o psi_pssm_input.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/format/feature_item.cpp: In member function 'void ncbi::objects::CFeatureItem::x_AddQualExceptions(ncbi::objects::CBioseqContext&)': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/format/feature_item.cpp:1412:28: warning: unused variable 'cfg' [-Wunused-variable] - 1412 | const CFlatFileConfig& cfg = ctx.Config(); - | ^~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/format/feature_item.cpp: In function 'const string& ncbi::objects::s_AaName(int)': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/format/feature_item.cpp:2108:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'unsigned int'} [-Wsign-compare] - 2108 | if ( idx > 0 && idx < ArraySize(s_TrnaList) ) { - | ~~~~^~~~~~~~~~~~~~~~~~~~~~~ +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/msa_pssm_input.cpp: In member function 'void ncbi::blast::CPsiBlastInputClustalW::x_ReadAsciiMsa(ncbi::CNcbiIstream&)': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/msa_pssm_input.cpp:125:32: warning: 'void ncbi::CAlnReader::Read(bool, bool, ncbi::objects::ILineErrorListener*)' is deprecated [-Wdeprecated-declarations] + 125 | reader.Read(false, true); + | ^ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/msa_pssm_input.cpp:42: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/readers/aln_reader.hpp:215:10: note: declared here + 215 | void Read( + | ^~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/msa_pssm_input.cpp: In member function 'void ncbi::blast::CPsiBlastInputClustalW::x_ExtractAlignmentData()': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/msa_pssm_input.cpp:376:22: warning: comparison of integer expressions of different signedness: 'int' and 'Uint4' {aka 'unsigned int'} [-Wsign-compare] + 376 | while (k < m_Msa->dimensions->query_length && + | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, @@ -36022,18 +36061,6 @@ /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/msa_pssm_input.cpp: In member function 'void ncbi::blast::CPsiBlastInputClustalW::x_ReadAsciiMsa(ncbi::CNcbiIstream&)': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/msa_pssm_input.cpp:125:32: warning: 'void ncbi::CAlnReader::Read(bool, bool, ncbi::objects::ILineErrorListener*)' is deprecated [-Wdeprecated-declarations] - 125 | reader.Read(false, true); - | ^ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/msa_pssm_input.cpp:42: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/readers/aln_reader.hpp:215:10: note: declared here - 215 | void Read( - | ^~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/msa_pssm_input.cpp: In member function 'void ncbi::blast::CPsiBlastInputClustalW::x_ExtractAlignmentData()': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/msa_pssm_input.cpp:376:22: warning: comparison of integer expressions of different signedness: 'int' and 'Uint4' {aka 'unsigned int'} [-Wsign-compare] - 376 | while (k < m_Msa->dimensions->query_length && - | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, @@ -36047,6 +36074,14 @@ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/format/feature_item.cpp: In member function 'void ncbi::objects::CFeatureItem::x_AddQualExceptions(ncbi::objects::CBioseqContext&)': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/format/feature_item.cpp:1412:28: warning: unused variable 'cfg' [-Wunused-variable] + 1412 | const CFlatFileConfig& cfg = ctx.Config(); + | ^~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/format/feature_item.cpp: In function 'const string& ncbi::objects::s_AaName(int)': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/format/feature_item.cpp:2108:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'unsigned int'} [-Wsign-compare] + 2108 | if ( idx > 0 && idx < ArraySize(s_TrnaList) ) { + | ~~~~^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/list:64, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbi_stack.hpp:36, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:42, @@ -36148,7 +36183,13 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/psiblast_aux_priv.cpp:459:46: note: parameter passing for argument of type 'std::__cxx11::list::const_iterator' changed in GCC 7.1 459 | freq_ratios.insert(itr, diff, 0.0); | ^ --protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/msa_pssm_input.cpp -o msa_pssm_input.o +ong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/format/defline_item.cpp -o defline_item.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/format/feature_item.cpp -o feature_item.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/format/genome_item.cpp -o genome_item.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/format/ctrl_items.cpp -o ctrl_items.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/format/keywords_item.cpp -o keywords_item.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/format/locus_item.cpp -o locus_item.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/msa_pssm_input.cpp -o msa_pssm_input.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/psiblast_aux_priv.cpp -o psiblast_aux_priv.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/blast_aux_priv.cpp -o blast_aux_priv.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/blast_advprot_options.cpp -o blast_advprot_options.o @@ -36158,13 +36199,7 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/format/keywords_item.cpp:324:18: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] 324 | } catch (CException) { | ^~~~~~~~~~ -ong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/format/defline_item.cpp -o defline_item.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/format/feature_item.cpp -o feature_item.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/format/genome_item.cpp -o genome_item.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/format/ctrl_items.cpp -o ctrl_items.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/format/keywords_item.cpp -o keywords_item.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/format/locus_item.cpp -o locus_item.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducibleIn file included from /usr/include/c++/10/vector:72, +In file included from /usr/include/c++/10/vector:72, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, @@ -36203,24 +36238,16 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/format/primary_item.cpp:221:28: warning: comparison of integer expressions of different signedness: 'ncbi::TSeqPos' {aka 'unsigned int'} and 'int' [-Wsign-compare] 221 | if (this_start < (15 + last_stop) ) { | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/format/reference_item.cpp: In member function 'virtual void ncbi::objects::CReferenceItem::x_GatherInfo(ncbi::objects::CBioseqContext&)': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/format/reference_item.cpp:693:41: warning: unused variable 'muid' [-Wunused-variable] - 693 | const TEntrezId muid = pub.GetMuid(); - | ^~~~ time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/dust_filter.cpp -o dust_filter.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/rps_aux.cpp -o rps_aux.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/search_strategy.cpp -o search_strategy.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/setup_factory.cpp -o setup_factory.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/prelim_stage.cpp -o prelim_stage.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/traceback_stage.cpp -o traceback_stage.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproduci/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/format/source_item.cpp: In member function 'void ncbi::objects::CSourceItem::x_GatherInfoIdx(ncbi::objects::CBioseqContext&)': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/format/source_item.cpp:182:23: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] - 182 | for (int i = 0; i < sizeof (legal_organelles) / sizeof (const char*); i++) { - | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/format/source_item.cpp: In member function 'void ncbi::objects::CSourceItem::x_SetSource(const ncbi::objects::CBioSource&, const ncbi::CSerialObject&)': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/format/source_item.cpp:387:21: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CBioSource_Base::TGenome' {aka 'int'} and 'const unsigned int' [-Wsign-compare] - 387 | if ( genome >= s_organelle_prefix_size ) { - | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproduci/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/format/reference_item.cpp: In member function 'virtual void ncbi::objects::CReferenceItem::x_GatherInfo(ncbi::objects::CBioseqContext&)': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/format/reference_item.cpp:693:41: warning: unused variable 'muid' [-Wunused-variable] + 693 | const TEntrezId muid = pub.GetMuid(); + | ^~~~ -path/ncbi-blast+-2.11.0+ds/c++/src/objtools/format/primary_item.cpp -o primary_item.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/format/reference_item.cpp -o reference_item.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/format/segment_item.cpp -o segment_item.o @@ -36228,7 +36255,15 @@ /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/format/source_item.cpp -o source_item.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/format/version_item.cpp -o version_item.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/format/wgs_item.cpp -o wgs_item.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=formatble-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/uniform_search.cpp -o uniform_search.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/format/source_item.cpp: In member function 'void ncbi::objects::CSourceItem::x_GatherInfoIdx(ncbi::objects::CBioseqContext&)': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/format/source_item.cpp:182:23: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] + 182 | for (int i = 0; i < sizeof (legal_organelles) / sizeof (const char*); i++) { + | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/format/source_item.cpp: In member function 'void ncbi::objects::CSourceItem::x_SetSource(const ncbi::objects::CBioSource&, const ncbi::CSerialObject&)': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/format/source_item.cpp:387:21: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CBioSource_Base::TGenome' {aka 'int'} and 'const unsigned int' [-Wsign-compare] + 387 | if ( genome >= s_organelle_prefix_size ) { + | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ +ble-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/uniform_search.cpp -o uniform_search.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/local_search.cpp -o local_search.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/blast_results.cpp -o blast_results.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/remote_search.cpp -o remote_search.o @@ -36271,13 +36306,7 @@ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ --security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/format/tsa_item.cpp -o tsa_item.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/format/flat_seqloc.cpp -o flat_seqloc.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/format/qualifiers.cpp -o qualifiers.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/format/context.cpp -o context.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/format/gather_items.cpp -o gather_items.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/format/embl_gather.cpp -o embl_gather.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools//build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/format/gather_items.cpp:965:13: warning: 'bool ncbi::objects::s_NsAreGaps(const ncbi::objects::CBioseq_Handle&, ncbi::objects::CBioseqContext&)' defined but not used [-Wunused-function] +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/format/gather_items.cpp:965:13: warning: 'bool ncbi::objects::s_NsAreGaps(const ncbi::objects::CBioseq_Handle&, ncbi::objects::CBioseqContext&)' defined but not used [-Wunused-function] 965 | static bool s_NsAreGaps(const CBioseq_Handle& seq, CBioseqContext& ctx) | ^~~~~~~~~~~ debug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp -o bioseq_extract_data_priv.o @@ -36286,25 +36315,13 @@ /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/blast_dbindex.cpp -o blast_dbindex.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/split_query_cxx.cpp -o split_query_cxx.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/split_query_aux_priv.cpp -o split_query_aux_priv.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protecIn file included from /usr/include/c++/10/vector:72, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/blast/api/effsearchspace_calc.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/split_query_aux_priv.cpp:34: -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]': -/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 426 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/vector.tcc: In function 'void ncbi::blast::SplitQuery_SetEffectiveSearchSpace(ncbi::CRef, ncbi::CRef, ncbi::CRef)': -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protec-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/format/tsa_item.cpp -o tsa_item.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/format/flat_seqloc.cpp -o flat_seqloc.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/format/qualifiers.cpp -o qualifiers.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/format/context.cpp -o context.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/format/gather_items.cpp -o gather_items.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/format/embl_gather.cpp -o embl_gather.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:42, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/winmask/seq_masker.hpp:41, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/winmask_filter.cpp:61: @@ -36398,6 +36415,24 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/vector:72, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/blast/api/effsearchspace_calc.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/split_query_aux_priv.cpp:34: +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]': +/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 426 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/vector.tcc: In function 'void ncbi::blast::SplitQuery_SetEffectiveSearchSpace(ncbi::CRef, ncbi::CRef, ncbi::CRef)': +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/rpsblast_local.cpp:35: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -36511,7 +36546,13 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:72, +tor-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/split_query_blk.cpp -o split_query_blk.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/winmask_filter.cpp -o winmask_filter.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/subj_ranges_set.cpp -o subj_ranges_set.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/rpsblast_local.cpp -o rpsblast_local.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/seedtop.cpp -o seedtop.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/cdd_pssm_input.cpp -o cdd_pssm_input.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -DIn file included from /usr/include/c++/10/vector:72, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, @@ -36622,19 +36663,6 @@ /usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator, long long int>*, std::vector, long long int> > >' changed in GCC 7.1 1891 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -tor-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/split_query_blk.cpp -o split_query_blk.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/winmask_filter.cpp -o winmask_filter.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/subj_ranges_set.cpp -o subj_ranges_set.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/rpsblast_local.cpp -o rpsblast_local.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/seedtop.cpp -o seedtop.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/cdd_pssm_input.cpp -o cdd_pssm_input.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/format/genbank_formatter.cpp: In member function 'virtual void ncbi::objects::CGenbankFormatter::FormatSequence(const ncbi::objects::CSequenceItem&, ncbi::objects::IFlatTextOStream&)': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/format/genbank_formatter.cpp:2047:18: warning: catching polymorphic type 'class ncbi::objects::CSeqVectorException' by value [-Wcatch-value=] - 2047 | } catch (CSeqVectorException) { - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/format/genbank_formatter.cpp:2088:26: warning: catching polymorphic type 'class ncbi::objects::CSeqVectorException' by value [-Wcatch-value=] - 2088 | } catch (CSeqVectorException) { - | ^~~~~~~~~~~~~~~~~~~ format/genbank_gather.cpp -o genbank_gather.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/format/flat_file_generator.cpp -o flat_file_generator.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/format/item_formatter.cpp -o item_formatter.o @@ -36642,11 +36670,7 @@ /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/format/genbank_formatter.cpp -o genbank_formatter.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/format/format_item_ostream.cpp -o format_item_ostream.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/format/item_ostream.cpp -o item_ostream.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werr/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/format/genbank_formatter.cpp: At global scope: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/format/genbank_formatter.cpp:281:15: warning: 'std::string ncbi::objects::s_get_anchor_html(const string&, ncbi::TGi)' defined but not used [-Wunused-function] - 281 | static string s_get_anchor_html(const string & sAnchorName, TGi iGi ) - | ^~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:72, +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -WerrIn file included from /usr/include/c++/10/vector:72, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, @@ -36678,6 +36702,13 @@ /usr/include/c++/10/bits/stl_vector.h:960:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 960 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/format/genbank_formatter.cpp: In member function 'virtual void ncbi::objects::CGenbankFormatter::FormatSequence(const ncbi::objects::CSequenceItem&, ncbi::objects::IFlatTextOStream&)': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/format/genbank_formatter.cpp:2047:18: warning: catching polymorphic type 'class ncbi::objects::CSeqVectorException' by value [-Wcatch-value=] + 2047 | } catch (CSeqVectorException) { + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/format/genbank_formatter.cpp:2088:26: warning: catching polymorphic type 'class ncbi::objects::CSeqVectorException' by value [-Wcatch-value=] + 2088 | } catch (CSeqVectorException) { + | ^~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/blast_node.cpp:35: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -36791,172 +36822,51 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/deltablast_options.cpp -o deltablast_options.o +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/format/genbank_formatter.cpp: At global scope: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/format/genbank_formatter.cpp:281:15: warning: 'std::string ncbi::objects::s_get_anchor_html(const string&, ncbi::TGi)' defined but not used [-Wunused-function] + 281 | static string s_get_anchor_html(const string & sAnchorName, TGi iGi ) + | ^~~~~~~~~~~~~~~~~ +or=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/format/ostream_text_ostream.cpp -o ostream_text_ostream.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/format/origin_item.cpp -o origin_item.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/format/ftable_gather.cpp -o ftable_gather.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/format/ftable_formatter.cpp -o ftable_formatter.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/format/gbseq_formatter.cpp -o gbseq_formatter.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/format/flat_file_config.cpp -o flat_file_config.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/deltablast_options.cpp -o deltablast_options.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/deltablast.cpp -o deltablast.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/magicblast_options.cpp -o magicblast_options.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/magicblast.cpp -o magicblast.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/blast_node.cpp -o blast_node.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/api/blast_usage_report.cpp -o blast_usage_report.o /bin/rm -f libxblast.so .libxblast.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libxblast.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC blast_aux.o blast_options_cxx.o blast_options_local_priv.o blast_options_builder.o blast_setup_cxx.o blast_seqalign.o blast_options_handle.o blast_nucl_options.o disc_nucl_options.o blast_prot_options.o psiblast_options.o blast_rps_options.o blastx_options.o tblastx_options.o tblor=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/format/ostream_text_ostream.cpp -o ostream_text_ostream.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/format/origin_item.cpp -o origin_item.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/format/ftable_gather.cpp -o ftable_gather.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/format/ftable_formatter.cpp -o ftable_formatter.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/format/gbseq_formatter.cpp -o gbseq_formatter.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/format/flat_file_config.cpp -o flat_file_config.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/astn_options.o rpstblastn_options.o phiblast_nucl_options.o phiblast_prot_options.o pssm_engine.o local_blast.o remote_blast.o seqinfosrc_seqvec.o seqinfosrc_seqdb.o seqinfosrc_bioseq.o seqsrc_multiseq.o seqsrc_seqdb.o seqsrc_query_factory.o bl2seq.o blast_objmgr_tools.o repeats_filter_cxx.o blast_mtlock.o psibl2seq.o local_db_adapter.o psiblast.o psiblast_impl.o psiblast_iteration.o psi_pssm_input.o msa_pssm_input.o psiblast_aux_priv.o blast_aux_priv.o blast_advprot_options.o blastp_kmer_options.o version.o dust_filter.o rps_aux.o search_strategy.o setup_factory.o prelim_stage.o traceback_stage.o uniform_search.o local_search.o blast_results.o remote_search.o query_data.o objmgr_query_data.o objmgrfree_query_data.o bioseq_extract_data_priv.o effsearchspace_calc.o blast_seqinfosrc_aux.o blast_dbindex.o split_query_cxx.o split_query_aux_priv.o split_query_blk.o winmask_filter.o subj_ranges_set.o rpsblast_local.o seedtop.o cdd_pssm_input.o deltablast_options.o deltablast.o magicblast_options.o magicblast.o blast_node.o blast_usage_report.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lblast -lseqdb -lseqset -lseq -lgeneral -lxser -lxconnect -lsequtil -ltables -lxutil -lxncbi -llmdb -lpthread -ldl -lm -lpthread +/usr/bin/g++ -std=gnu++14 -shared -o libxblast.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC blast_aux.o blast_options_cxx.o blast_options_local_priv.o blast_options_builder.o blast_setup_cxx.o blast_seqalign.o blast_options_handle.o blast_nucl_options.o disc_nucl_options.o blast_prot_options.o psiblast_options.o blast_rps_options.o blastx_options.o tblastx_options.o tblastn_options.o rpstblastn_options.o phiblast_nucl_options.o phiblast_prot_options.o pssm_engine.o local_blast.o remote_blast.o seqinfosrc_seqvec.o seqinfosrc_seqdb.o seqinfosrc_bioseq.o seqsrc_multiseq.o seqsrc_seqdb.o seqsrc_query_factory.o bl2seq.o blast_objmgr_tools.o repeats_filter_cxx.o blast_mtlock.o psibl2seq.o local_db_adapter.o psiblast.o psiblast_impl.o psiblast_iteration.o psi_pssm_input.o msa_pssm_input.o psiblast_aux_priv.o blast_aux_priv.o blast_advprot_options.o blastp_kmer_options.o version.o dust_filter.o rps_aux.o search_strategy.o setup_factory.o prelim_stage.o traceback_stage.o uniform_search.o local_search.o blast_results.o remote_search.o query_data.o objmgr_query_data.o objmgrfree_query_data.o bioseq_extract_data_priv.o effsearchspace_calc.o blast_seqinfosrc_aux.o blast_dbindex.o split_query_cxx.o split_query_aux_priv.o split_query_blk.o winmask_filter.o subj_ranges_set.o rpsblast_local.o seedtop.o cdd_pssm_input.o deltablast_options.o deltablast.o magicblast_options.o magicblast.o blast_node.o blast_usage_report.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lblast -lseqdb -lseqset -lseq -lgeneral -lxser -lxconnect -lsequtil -ltables -lxutil -lxncbi -llmdb -lpthread -ldl -lm -lpthread /bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxblast.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib /bin/ln -f libxblast.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libxblast.so /bin/ln -f .xblast.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.xblast.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/api' -cd algo/blast/blastinput/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=blastinput UNIX_PROJ="" sources= configurables=configurables.null -cd algo/blast/proteinkmer/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=proteinkmer UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/blastinput/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=blastinput UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/proteinkmer/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=proteinkmer UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/blastinput' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/proteinkmer' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/blastinput' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/blastinput' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/blastinput' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/blastinput' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/proteinkmer' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/blastinput' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/proteinkmer' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/blastinput' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/proteinkmer' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/proteinkmer' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/blastinput TMPL=blastinput -w -j3 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/proteinkmer TMPL=proteinkmer -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -In file included from /usr/include/c++/10/vector:72, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/util/sequtil/sequtil_convert.hpp:34, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/proteinkmer/blastkmer.cpp:34: -/usr/include/c++/10/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::iterator) [with _Tp = std::pair; _Alloc = std::allocator >]': -/usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 - 184 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 -In file included from /usr/include/c++/10/algorithm:62, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistl.hpp:180, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/util/sequtil/sequtil_convert.hpp:34, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/proteinkmer/blastkmer.cpp:34: -/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const std::pair&)>]': -/usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - 79 | __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, - | ^~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const std::pair&)>]': -/usr/include/c++/10/bits/stl_algo.h:1819:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - 1819 | __unguarded_linear_insert(_RandomAccessIterator __last, - | ^~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const std::pair&)>]': -/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - 1839 | __insertion_sort(_RandomAccessIterator __first, - | ^~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 -In file included from /usr/include/c++/10/bits/stl_algo.h:61, - from /usr/include/c++/10/algorithm:62, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistl.hpp:180, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/util/sequtil/sequtil_convert.hpp:34, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/proteinkmer/blastkmer.cpp:34: -/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const std::pair&)>]': -/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, - | ^~~~~~~~~~~~~ -In file included from /usr/include/c++/10/algorithm:62, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistl.hpp:180, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/util/sequtil/sequtil_convert.hpp:34, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/proteinkmer/blastkmer.cpp:34: -/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const std::pair&)>]': -/usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - 1662 | __heap_select(_RandomAccessIterator __first, - | ^~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const std::pair&)>]': -/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - 1945 | __introsort_loop(_RandomAccessIterator __first, - | ^~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h:1924:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - 1924 | std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 1925 | __comp); - | ~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:1924:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - 1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:1937:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - 1937 | std::__heap_select(__first, __middle, __last, __comp); - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h: In member function 'ncbi::CRef ncbi::blast::CBlastKmer::x_SearchMultipleQueries(int, int, const ncbi::SBlastKmerParameters&, uint32_t*, uint32_t*, std::vector >&, std::vector)': -/usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - 1974 | std::__introsort_loop(__first, __last, - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ - 1975 | std::__lg(__last - __first) * 2, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 1976 | __comp); - | ~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - 1891 | std::__insertion_sort(__first, __last, __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:67, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/util/sequtil/sequtil_convert.hpp:34, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/proteinkmer/blastkmer.cpp:34: -/usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); - | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); - | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); - | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/blastinput' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/blastinput' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/proteinkmer TMPL=proteinkmer -w -j4 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/blastinput TMPL=blastinput -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp:34: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -37073,6 +36983,10 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp:447: warning: ignoring '#pragma ivdep ' [-Wunknown-pragmas] 447 | #pragma ivdep | +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp: In function 'void ncbi::neighbor_query(const std::vector >&, const uint64_t*, std::vector >&, ncbi::blast::CMinHashFile&, int, int, double, ncbi::TBlastKmerPrelimScoreVector&, ncbi::BlastKmerStats&, int)': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp:807:17: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] + 807 | if (last_oid == *i) + | ~~~~~~~~~^~~~~ In file included from /usr/include/c++/10/vector:72, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, @@ -37102,13 +37016,69 @@ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator, double>*, std::vector, double> > >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +In file included from /usr/include/c++/10/vector:72, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/util/sequtil/sequtil_convert.hpp:34, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/proteinkmer/blastkmer.cpp:34: +/usr/include/c++/10/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::iterator) [with _Tp = std::pair; _Alloc = std::allocator >]': +/usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 + 184 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/proteinkmer' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/proteinkmer/blastkmer.cpp -o blastkmer.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/proteinkmer/blastkmerindex.cpp -o blastkmerindex.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/proteinkmer/blastkmeroptions.cpp -o blastkmeroptions.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/proteinkmer/blastkmerresults.cpp -o blastkmerresults.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp -o blastkmerutils.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/proteinkmer/mhfile.cpp -o mhfile/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/proteinkmer/mhfile.cpp:84: warning: ignoring '#pragma ivdep ' [-Wunknown-pragmas] +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/proteinkmer/mhfile.cpp -o mhfileIn file included from /usr/include/c++/10/algorithm:62, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistl.hpp:180, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/util/sequtil/sequtil_convert.hpp:34, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/proteinkmer/blastkmer.cpp:34: +/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const std::pair&)>]': +/usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + 79 | __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, + | ^~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const std::pair&)>]': +/usr/include/c++/10/bits/stl_algo.h:1819:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + 1819 | __unguarded_linear_insert(_RandomAccessIterator __last, + | ^~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const std::pair&)>]': +/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + 1839 | __insertion_sort(_RandomAccessIterator __first, + | ^~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 +In file included from /usr/include/c++/10/bits/stl_algo.h:61, + from /usr/include/c++/10/algorithm:62, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistl.hpp:180, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/util/sequtil/sequtil_convert.hpp:34, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/proteinkmer/blastkmer.cpp:34: +/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const std::pair&)>]': +/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/proteinkmer/mhfile.cpp:84: warning: ignoring '#pragma ivdep ' [-Wunknown-pragmas] 84 | #pragma ivdep | /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/proteinkmer/mhfile.cpp:91: warning: ignoring '#pragma ivdep ' [-Wunknown-pragmas] @@ -37117,14 +37087,157 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/proteinkmer/mhfile.cpp:98: warning: ignoring '#pragma ivdep ' [-Wunknown-pragmas] 98 | #pragma ivdep | -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp: In function 'void ncbi::neighbor_query(const std::vector >&, const uint64_t*, std::vector >&, ncbi::blast::CMinHashFile&, int, int, double, ncbi::TBlastKmerPrelimScoreVector&, ncbi::BlastKmerStats&, int)': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp:807:17: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] - 807 | if (last_oid == *i) - | ~~~~~~~~~^~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/proteinkmer/mhfile.cpp: In member function 'void ncbi::blast::CMinHashFile::GetMinHits(int, int&, std::vector&) const': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/proteinkmer/mhfile.cpp:77:18: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare] - 77 | if (hits.size() < numHashes) - | ~~~~~~~~~~~~^~~~~~~~~~~ +In file included from /usr/include/c++/10/algorithm:62, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistl.hpp:180, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/util/sequtil/sequtil_convert.hpp:34, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/proteinkmer/blastkmer.cpp:34: +/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const std::pair&)>]': +/usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + 1662 | __heap_select(_RandomAccessIterator __first, + | ^~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const std::pair&)>]': +/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + 1945 | __introsort_loop(_RandomAccessIterator __first, + | ^~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h:1924:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + 1924 | std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 1925 | __comp); + | ~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:1924:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + 1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:1937:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + 1937 | std::__heap_select(__first, __middle, __last, __comp); + | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h: In member function 'ncbi::CRef ncbi::blast::CBlastKmer::x_SearchMultipleQueries(int, int, const ncbi::SBlastKmerParameters&, uint32_t*, uint32_t*, std::vector >&, std::vector)': +/usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + 1974 | std::__introsort_loop(__first, __last, + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ + 1975 | std::__lg(__last - __first) * 2, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 1976 | __comp); + | ~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + 1891 | std::__insertion_sort(__first, __last, __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/vector:67, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/util/sequtil/sequtil_convert.hpp:34, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/proteinkmer/blastkmer.cpp:34: +/usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); + | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); + | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); + | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/map:60, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiargs.hpp:84, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp:34: +/usr/include/c++/10/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]': +/usr/include/c++/10/bits/stl_tree.h:2458:7: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 + 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/vector:72, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiargs.hpp:84, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp:34: +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': +/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 + 426 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/map:61, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiargs.hpp:84, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp:34: +/usr/include/c++/10/bits/stl_map.h: In function 'void ncbi::neighbor_query(const std::vector >&, const uint64_t*, std::vector >&, ncbi::blast::CMinHashFile&, int, int, double, ncbi::TBlastKmerPrelimScoreVector&, ncbi::BlastKmerStats&, int)': +/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 + 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 502 | std::tuple(__k), + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 503 | std::tuple<>()); + | ~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 + 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 502 | std::tuple(__k), + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 503 | std::tuple<>()); + | ~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/vector:72, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiargs.hpp:84, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp:34: +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/proteinkmer/kblastapi.cpp:34: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -37238,6 +37351,10 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/proteinkmer/mhfile.cpp: In member function 'void ncbi::blast::CMinHashFile::GetMinHits(int, int&, std::vector&) const': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/proteinkmer/mhfile.cpp:77:18: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare] + 77 | if (hits.size() < numHashes) + | ~~~~~~~~~~~~^~~~~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/blastinput' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/blastinput/blast_input.cpp -o blast_input.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/blastinput/blast_fasta_input.cpp -o blast_fasta_input.o @@ -37245,89 +37362,7 @@ /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/blastinput/blast_args.cpp -o blast_args.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/blastinput/cmdline_flags.cpp -o cmdline_flags.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/blastinput/blast_input_aux.cpp -o blast_input_aux.o -/usr/bin/g++ -std=gnu++14 -c -WaIn file included from /usr/include/c++/10/map:60, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiargs.hpp:84, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp:34: -/usr/include/c++/10/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]': -/usr/include/c++/10/bits/stl_tree.h:2458:7: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 - 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:72, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiargs.hpp:84, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp:34: -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': -/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 - 426 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/map:61, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiargs.hpp:84, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp:34: -/usr/include/c++/10/bits/stl_map.h: In function 'void ncbi::neighbor_query(const std::vector >&, const uint64_t*, std::vector >&, ncbi::blast::CMinHashFile&, int, int, double, ncbi::TBlastKmerPrelimScoreVector&, ncbi::BlastKmerStats&, int)': -/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 - 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 502 | std::tuple(__k), - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 503 | std::tuple<>()); - | ~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 - 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 502 | std::tuple(__k), - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 503 | std::tuple<>()); - | ~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:72, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiargs.hpp:84, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp:34: -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/format/alignment_item.cpp -o alignment_item.o +/usr/bin/g++ -std=gnu++14 -c -Wainclude /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/format/alignment_item.cpp -o alignment_item.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/format/gap_item.cpp -o gap_item.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/format/genome_project_item.cpp -o genome_project_item.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/objtools/format/sam_formatter.cpp -o sam_formatter.o @@ -37363,41 +37398,28 @@ /bin/ln -f .proteinkmer.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.proteinkmer.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/proteinkmer' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/proteinkmer' -cd algo/blast/igblast/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=igblast UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/igblast/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=igblast UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/proteinkmer/unit_test/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=proteinkmer_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/igblast' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/igblast' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/igblast' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/igblast' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/igblast' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/igblast TMPL=igblast -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/igblast/igblast.cpp: In member function 'void ncbi::blast::CIgBlast::x_FindDJAln(ncbi::CRef&, ncbi::CRef&, std::string, bool, ncbi::objects::ENa_strand, int, int, bool)': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/igblast/igblast.cpp:994:43: warning: comparison of integer expressions of different signedness: 'ncbi::TSeqPos' {aka 'unsigned int'} and 'int' [-Wsign-compare] - 994 | if ((*it)->GetSeqStart(1) > max_allowed_j_deletion) keep = false; - | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/igblast' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/igblast/igblast.cpp -o igblast.o -/bin/rm -f libigblast.so .libigblast.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libigblast.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC igblast.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxconnect -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -llmdb -lpthread -ldl -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libigblast.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -/bin/ln -f libigblast.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libigblast.so -/bin/ln -f .igblast.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.igblast.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/igblast' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/igblast' -cd algo/blast/proteinkmer/unit_test/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=proteinkmer_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/proteinkmer/unit_test' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/proteinkmer/unit_test' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/proteinkmer/unit_test' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/igblast' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/igblast' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/proteinkmer/unit_test' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/igblast' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/proteinkmer/unit_test' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/proteinkmer/unit_test TMPL=proteinkmer_unit_test -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/igblast' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/igblast TMPL=igblast -w -j4 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/proteinkmer/unit_test TMPL=proteinkmer_unit_test -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/proteinkmer/unit_test/proteinkmer_unit_test.cpp:39: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -37521,17 +37543,17 @@ /bin/ln -f .xformat.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.xformat.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/format' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/format' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=aalookup_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=aalookup_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=aalookup_unit_test -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=aalookup_unit_test -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/aalookup_unit_test.cpp:34: @@ -37648,6 +37670,16 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ +ll -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/blastinput/blastp_args.cpp -o blastp_args.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/blastinput/blastn_args.cpp -o blastn_args.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/blastinput/rmblastn_args.cpp -o rmblastn_args.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/blastinput/blastx_args.cpp -o blastx_args.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/blastinput/tblastn_args.cpp -o tblastn_args.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/blastinput/tblastx_args.cpp -o tblastx_args.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-prote/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/igblast/igblast.cpp: In member function 'void ncbi::blast::CIgBlast::x_FindDJAln(ncbi::CRef&, ncbi::CRef&, std::string, bool, ncbi::objects::ENa_strand, int, int, bool)': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/igblast/igblast.cpp:994:43: warning: comparison of integer expressions of different signedness: 'ncbi::TSeqPos' {aka 'unsigned int'} and 'int' [-Wsign-compare] + 994 | if ((*it)->GetSeqStart(1) > max_allowed_j_deletion) keep = false; + | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, @@ -37664,13 +37696,7 @@ /usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' 14 | BOOST_HEADER_DEPRECATED( "" ) | ^~~~~~~~~~~~~~~~~~~~~~~ -ll -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/blastinput/blastp_args.cpp -o blastp_args.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/blastinput/blastn_args.cpp -o blastn_args.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/blastinput/rmblastn_args.cpp -o rmblastn_args.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/blastinput/blastx_args.cpp -o blastx_args.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/blastinput/tblastn_args.cpp -o tblastn_args.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/blastinput/tblastx_args.cpp -o tblastx_args.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-proteIn file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, +In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, @@ -37708,17 +37734,17 @@ /bin/ln -f aalookup_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/aalookup_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=aascan_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=aascan_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=aascan_unit_test -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=aascan_unit_test -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp:34: @@ -37835,6 +37861,148 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ +ctor-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/blastinput/psiblast_args.cpp -o psiblast_args.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/blastinput/rpsblast_args.cpp -o rpsblast_args.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/blastinput/rpstblastn_args.cpp -o rpstblastn_args.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/blastinput/igblastn_args.cpp -o igblastn_args.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/blastinput/igblastp_args.cpp -o igblastp_args.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/blastinput/deltablast_args.cpp -o deltablast_args.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCEmake[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/igblast' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/igblast/igblast.cpp -o igblast.o +/bin/rm -f libigblast.so .libigblast.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libigblast.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC igblast.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxconnect -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -llmdb -lpthread -ldl -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libigblast.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib +/bin/ln -f libigblast.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libigblast.so +/bin/ln -f .igblast.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.igblast.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/igblast' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/igblast' +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=blastdiag_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=blastdiag_unit_test -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/blastdiag_unit_test.cpp:34: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/blastdiag_unit_test.cpp:34: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/blastdiag_unit_test.cpp:34: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, @@ -37855,6 +38023,22 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/blastinput/igblastp_args.cpp:67:16: warning: unused variable 'kFilterByDefault' [-Wunused-variable] 67 | const bool kFilterByDefault = false; | ^~~~~~~~~~~~~~~~ +In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, + from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, + from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, + from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, + from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, + from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, + from /usr/include/boost/shared_ptr.hpp:17, + from /usr/include/boost/test/tools/assertion_result.hpp:21, + from /usr/include/boost/test/tools/old/impl.hpp:20, + from /usr/include/boost/test/test_tools.hpp:46, + from /usr/include/boost/test/unit_test.hpp:18, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/blastdiag_unit_test.cpp:34: +/usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' + 14 | BOOST_HEADER_DEPRECATED( "" ) + | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, @@ -37877,40 +38061,48 @@ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -ctor-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/blastinput/psiblast_args.cpp -o psiblast_args.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/blastinput/rpsblast_args.cpp -o rpsblast_args.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/blastinput/rpstblastn_args.cpp -o rpstblastn_args.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/blastinput/igblastn_args.cpp -o igblastn_args.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/blastinput/igblastp_args.cpp -o igblastp_args.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/blastinput/deltablast_args.cpp -o deltablast_args.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE/usr/include/c++/10/bits/stl_vector.h: In member function 'void proteinkmers::KmerResultsSet::test_method()': +/usr/include/c++/10/bits/stl_vector.h: In member function 'void proteinkmers::KmerResultsSet::test_method()': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/proteinkmer/unit_test' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=proteinkmer_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/proteinkmer/unit_test/proteinkmer_unit_test.cpp -o proteinkmer_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie proteinkmer_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -ltest_boost -lproteinkmer -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -ldl -ldl -lm -lpthread -o proteinkmer_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f proteinkmer_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin -/bin/ln -f proteinkmer_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/proteinkmer_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/proteinkmer/unit_test' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/proteinkmer/unit_test' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=blastdiag_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/blastinput/magicblast_args.cpp: In member function 'virtual void ncbi::blast::CMapperMTArgs::ExtractAlgorithmOptions(const ncbi::CArgs&, ncbi::blast::CBlastOptions&)': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/blastinput/magicblast_args.cpp:205:60: warning: 'unsigned int ncbi::GetCpuCount()' is deprecated [-Wdeprecated-declarations] + 205 | const int kMaxValue = static_cast(GetCpuCount()); + | ^ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbifile.hpp:53, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/blast/api/blast_aux.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/blast/api/uniform_search.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/blast/blastinput/magicblast_args.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/blastinput/magicblast_args.cpp:35: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbi_system.hpp:479:14: note: declared here + 479 | unsigned int GetCpuCount(void) + | ^~~~~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blastdiag_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/blastdiag_unit_test.cpp -o blastdiag_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie blastdiag_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -ldl -llmdb -lpthread -ldl -lm -lpthread -o blastdiag_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdiag_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin +/bin/ln -f blastdiag_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/blastdiag_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=blastengine_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=blastdiag_unit_test -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=blastengine_unit_test -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/blastdiag_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp:34: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -38002,13 +38194,13 @@ 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/blastdiag_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp:34: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/blastdiag_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp:34: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -38024,41 +38216,43 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/blastinput/magicblast_args.cpp: In member function 'virtual void ncbi::blast::CMapperMTArgs::ExtractAlgorithmOptions(const ncbi::CArgs&, ncbi::blast::CBlastOptions&)': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/blastinput/magicblast_args.cpp:205:60: warning: 'unsigned int ncbi::GetCpuCount()' is deprecated [-Wdeprecated-declarations] - 205 | const int kMaxValue = static_cast(GetCpuCount()); - | ^ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbifile.hpp:53, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/blast/api/blast_aux.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/blast/api/uniform_search.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/blast/blastinput/magicblast_args.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/blastinput/magicblast_args.cpp:35: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbi_system.hpp:479:14: note: declared here - 479 | unsigned int GetCpuCount(void) - | ^~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=aascan_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp -o aascan_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie aascan_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -ldl -ldl -lm -lpthread -o aascan_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f aascan_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin -/bin/ln -f aascan_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/aascan_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=blastengine_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, + from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, + from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, + from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, + from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, + from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, + from /usr/include/boost/shared_ptr.hpp:17, + from /usr/include/boost/test/tools/assertion_result.hpp:21, + from /usr/include/boost/test/tools/old/impl.hpp:20, + from /usr/include/boost/test/test_tools.hpp:46, + from /usr/include/boost/test/unit_test.hpp:18, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp:34: +/usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' + 14 | BOOST_HEADER_DEPRECATED( "" ) + | ^~~~~~~~~~~~~~~~~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/proteinkmer/unit_test' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=proteinkmer_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/proteinkmer/unit_test/proteinkmer_unit_test.cpp -o proteinkmer_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie proteinkmer_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -ltest_boost -lproteinkmer -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -ldl -ldl -lm -lpthread -o proteinkmer_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f proteinkmer_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin +/bin/ln -f proteinkmer_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/proteinkmer_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/proteinkmer/unit_test' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/proteinkmer/unit_test' +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=blastextend_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=blastengine_unit_test -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=blastextend_unit_test -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp:34: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -38150,13 +38344,13 @@ 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp:34: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp:34: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -38172,6 +38366,24 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=aascan_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp -o aascan_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie aascan_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -ldl -ldl -lm -lpthread -o aascan_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f aascan_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin +/bin/ln -f aascan_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/aascan_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=blastfilter_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=blastfilter_unit_test -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, @@ -38184,63 +38396,13 @@ from /usr/include/boost/test/test_tools.hpp:46, from /usr/include/boost/test/unit_test.hpp:18, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/blastdiag_unit_test.cpp:34: -/usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' - 14 | BOOST_HEADER_DEPRECATED( "" ) - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, - from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, - from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, - from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, - from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, - from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, - from /usr/include/boost/shared_ptr.hpp:17, - from /usr/include/boost/test/tools/assertion_result.hpp:21, - from /usr/include/boost/test/tools/old/impl.hpp:20, - from /usr/include/boost/test/test_tools.hpp:46, - from /usr/include/boost/test/unit_test.hpp:18, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp:34: /usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' 14 | BOOST_HEADER_DEPRECATED( "" ) | ^~~~~~~~~~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blastdiag_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/blastdiag_unit_test.cpp -o blastdiag_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie blastdiag_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -ldl -llmdb -lpthread -ldl -lm -lpthread -o blastdiag_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdiag_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin -/bin/ln -f blastdiag_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/blastdiag_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=blastextend_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=blastextend_unit_test -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. - -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/blastinput/magicblast_args.cpp -o magicblast_args.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/blastinput/kblastp_args.cpp -o kblastp_args.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/blastinput/blast_asn1_input.cpp -o blast_asn1_input.o -/bin/rm -f libblastinput.so .libblastinput.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libblastinput.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC blast_input.o blast_fasta_input.o blast_scope_src.o blast_args.o cmdline_flags.o blast_input_aux.o blastp_args.o blastn_args.o rmblastn_args.o blastx_args.o tblastn_args.o tblastx_args.o psiblast_args.o rpsblast_args.o rpstblastn_args.o igblastn_args.o igblastp_args.o deltablast_args.o magicblast_args.o kblastp_args.o blast_asn1_input.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lxblast -lalign_format -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lseqdb -lxobjread -lxobjread -lvariation -lsubmit -lxlogging -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lxutil -lncbi_xloader_genbank -lncbi_xreader_id2 -lncbi_xreader -lscoremat -lseqset -lseq -lxser -lxutil -lxncbi -llmdb -lpthread -ldl -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastinput.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -/bin/ln -f libblastinput.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libblastinput.so -/bin/ln -f .blastinput.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.blastinput.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/blastinput' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/blastinput' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=blastfilter_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:35: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -38332,13 +38494,13 @@ 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:35: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:35: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -38354,14 +38516,40 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp: In member function 'void blastengine::testBlastpPrelimSearch::test_method()': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp:452:33: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated [-Wdeprecated-declarations] + 452 | options->SetFilterString("L"); /* NCBI_FAKE_WARNING */ + | ^ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/blast/api/blast_options_handle.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/blast/api/blast_nucl_options.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp:53: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/blast/api/blast_options.hpp:180:26: note: declared here + 180 | NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); + | ^~~~~~~~~~~~~~~ + -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/blastinput/magicblast_args.cpp -o magicblast_args.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/blastinput/kblastp_args.cpp -o kblastp_args.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/blastinput/blast_asn1_input.cpp -o blast_asn1_input.o +/bin/rm -f libblastinput.so .libblastinput.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libblastinput.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC blast_input.o blast_fasta_input.o blast_scope_src.o blast_args.o cmdline_flags.o blast_input_aux.o blastp_args.o blastn_args.o rmblastn_args.o blastx_args.o tblastn_args.o tblastx_args.o psiblast_args.o rpsblast_args.o rpstblastn_args.o igblastn_args.o igblastp_args.o deltablast_args.o magicblast_args.o kblastp_args.o blast_asn1_input.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lxblast -lalign_format -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lseqdb -lxobjread -lxobjread -lvariation -lsubmit -lxlogging -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lxutil -lncbi_xloader_genbank -lncbi_xreader_id2 -lncbi_xreader -lscoremat -lseqset -lseq -lxser -lxutil -lxncbi -llmdb -lpthread -ldl -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastinput.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib +/bin/ln -f libblastinput.so /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib/libblastinput.so +/bin/ln -f .blastinput.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.blastinput.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/blastinput' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/blastinput' +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=blasthits_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=blastfilter_unit_test -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=blasthits_unit_test -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/blasthits_unit_test.cpp:34: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -38453,13 +38641,13 @@ 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/blasthits_unit_test.cpp:34: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/blasthits_unit_test.cpp:34: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -38487,7 +38675,7 @@ from /usr/include/boost/test/test_tools.hpp:46, from /usr/include/boost/test/unit_test.hpp:18, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:35: /usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' 14 | BOOST_HEADER_DEPRECATED( "" ) | ^~~~~~~~~~~~~~~~~~~~~~~ @@ -38503,20 +38691,10 @@ from /usr/include/boost/test/test_tools.hpp:46, from /usr/include/boost/test/unit_test.hpp:18, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/blasthits_unit_test.cpp:34: /usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' 14 | BOOST_HEADER_DEPRECATED( "" ) | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp: In member function 'void blastengine::testBlastpPrelimSearch::test_method()': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp:452:33: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated [-Wdeprecated-declarations] - 452 | options->SetFilterString("L"); /* NCBI_FAKE_WARNING */ - | ^ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/blast/api/blast_options_handle.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/blast/api/blast_nucl_options.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp:53: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/blast/api/blast_options.hpp:180:26: note: declared here - 180 | NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); - | ^~~~~~~~~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=blastengine_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp -o blastengine_unit_test.o /usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie blastengine_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -ldl -ldl -lm -lpthread -o blastengine_unit_test @@ -38524,20 +38702,20 @@ /bin/ln -f blastengine_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/blastengine_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=blasthits_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=blastoptions_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=blasthits_unit_test -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=blastoptions_unit_test -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/blasthits_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:35: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -38629,13 +38807,13 @@ 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/blasthits_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:35: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/blasthits_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:35: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -38658,20 +38836,20 @@ /bin/ln -f blastextend_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/blastextend_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=blastoptions_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=blastsetup_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=blastoptions_unit_test -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=blastsetup_unit_test -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:35: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -38763,13 +38941,13 @@ 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:35: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:35: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -38797,7 +38975,7 @@ from /usr/include/boost/test/test_tools.hpp:46, from /usr/include/boost/test/unit_test.hpp:18, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/blasthits_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:35: /usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' 14 | BOOST_HEADER_DEPRECATED( "" ) | ^~~~~~~~~~~~~~~~~~~~~~~ @@ -38813,7 +38991,7 @@ from /usr/include/boost/test/test_tools.hpp:46, from /usr/include/boost/test/unit_test.hpp:18, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:35: /usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' 14 | BOOST_HEADER_DEPRECATED( "" ) | ^~~~~~~~~~~~~~~~~~~~~~~ @@ -38943,20 +39121,20 @@ /bin/ln -f blasthits_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/blasthits_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=blastsetup_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=gapinfo_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=blastsetup_unit_test -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=gapinfo_unit_test -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/gapinfo_unit_test.cpp:34: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -39048,13 +39226,13 @@ 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/gapinfo_unit_test.cpp:34: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/gapinfo_unit_test.cpp:34: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -39082,38 +39260,31 @@ from /usr/include/boost/test/test_tools.hpp:46, from /usr/include/boost/test/unit_test.hpp:18, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/gapinfo_unit_test.cpp:34: /usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' 14 | BOOST_HEADER_DEPRECATED( "" ) | ^~~~~~~~~~~~~~~~~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=blastoptions_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp -o blastoptions_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie blastoptions_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -ldl -ldl -lm -lpthread -o blastoptions_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastoptions_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin -/bin/ln -f blastoptions_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/blastoptions_unit_test +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=gapinfo_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/gapinfo_unit_test.cpp -o gapinfo_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie gapinfo_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxconnect -lxncbi -llmdb -lpthread -ldl -lm -lpthread -o gapinfo_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f gapinfo_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin +/bin/ln -f gapinfo_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/gapinfo_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=gapinfo_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=gencode_singleton_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=gapinfo_unit_test -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=blastfilter_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp -o blastfilter_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie blastfilter_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -ldl -ldl -lm -lpthread -o blastfilter_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastfilter_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin -/bin/ln -f blastfilter_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/blastfilter_unit_test +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=gencode_singleton_unit_test -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/gapinfo_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/gencode_singleton_unit_test.cpp:39: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -39159,8 +39330,7 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) | ^~~~~~~~~~~~~~~ -/build/reproducibcd algo/blast/unit_tests/api/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=gencode_singleton_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -le-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' @@ -39206,13 +39376,13 @@ 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/gapinfo_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/gencode_singleton_unit_test.cpp:39: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/gapinfo_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/gencode_singleton_unit_test.cpp:39: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -39228,19 +39398,43 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, + from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, + from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, + from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, + from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, + from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, + from /usr/include/boost/shared_ptr.hpp:17, + from /usr/include/boost/test/tools/assertion_result.hpp:21, + from /usr/include/boost/test/tools/old/impl.hpp:20, + from /usr/include/boost/test/test_tools.hpp:46, + from /usr/include/boost/test/unit_test.hpp:18, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/gencode_singleton_unit_test.cpp:39: +/usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' + 14 | BOOST_HEADER_DEPRECATED( "" ) + | ^~~~~~~~~~~~~~~~~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=blastoptions_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp -o blastoptions_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie blastoptions_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -ldl -ldl -lm -lpthread -o blastoptions_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastoptions_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin +/bin/ln -f blastoptions_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/blastoptions_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=hspfilter_besthit_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=gencode_singleton_unit_test -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=hspfilter_besthit_unit_test -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/gencode_singleton_unit_test.cpp:39: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/hspfilter_besthit_unit_test.cpp:37: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -39332,13 +39526,13 @@ 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/gencode_singleton_unit_test.cpp:39: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/hspfilter_besthit_unit_test.cpp:37: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/gencode_singleton_unit_test.cpp:39: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/hspfilter_besthit_unit_test.cpp:37: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -39354,43 +39548,27 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, - from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, - from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, - from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, - from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, - from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, - from /usr/include/boost/shared_ptr.hpp:17, - from /usr/include/boost/test/tools/assertion_result.hpp:21, - from /usr/include/boost/test/tools/old/impl.hpp:20, - from /usr/include/boost/test/test_tools.hpp:46, - from /usr/include/boost/test/unit_test.hpp:18, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/gapinfo_unit_test.cpp:34: -/usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' - 14 | BOOST_HEADER_DEPRECATED( "" ) - | ^~~~~~~~~~~~~~~~~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=gapinfo_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/gapinfo_unit_test.cpp -o gapinfo_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie gapinfo_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxconnect -lxncbi -llmdb -lpthread -ldl -lm -lpthread -o gapinfo_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f gapinfo_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin -/bin/ln -f gapinfo_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/gapinfo_unit_test +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=gencode_singleton_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/gencode_singleton_unit_test.cpp -o gencode_singleton_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie gencode_singleton_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -ldl -llmdb -lpthread -ldl -lm -lpthread -o gencode_singleton_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f gencode_singleton_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin +/bin/ln -f gencode_singleton_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/gencode_singleton_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=hspfilter_besthit_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=hspfilter_culling_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=hspfilter_besthit_unit_test -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=hspfilter_culling_unit_test -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/hspfilter_besthit_unit_test.cpp:37: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/hspfilter_culling_unit_test.cpp:37: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -39482,13 +39660,13 @@ 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/hspfilter_besthit_unit_test.cpp:37: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/hspfilter_culling_unit_test.cpp:37: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/hspfilter_besthit_unit_test.cpp:37: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/hspfilter_culling_unit_test.cpp:37: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -39516,7 +39694,7 @@ from /usr/include/boost/test/test_tools.hpp:46, from /usr/include/boost/test/unit_test.hpp:18, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/gencode_singleton_unit_test.cpp:39: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/hspfilter_besthit_unit_test.cpp:37: /usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' 14 | BOOST_HEADER_DEPRECATED( "" ) | ^~~~~~~~~~~~~~~~~~~~~~~ @@ -39532,31 +39710,31 @@ from /usr/include/boost/test/test_tools.hpp:46, from /usr/include/boost/test/unit_test.hpp:18, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/hspfilter_besthit_unit_test.cpp:37: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/hspfilter_culling_unit_test.cpp:37: /usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' 14 | BOOST_HEADER_DEPRECATED( "" ) | ^~~~~~~~~~~~~~~~~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=gencode_singleton_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/gencode_singleton_unit_test.cpp -o gencode_singleton_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie gencode_singleton_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -ldl -llmdb -lpthread -ldl -lm -lpthread -o gencode_singleton_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f gencode_singleton_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin -/bin/ln -f gencode_singleton_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/gencode_singleton_unit_test +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=blastfilter_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp -o blastfilter_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie blastfilter_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -ldl -ldl -lm -lpthread -o blastfilter_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastfilter_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin +/bin/ln -f blastfilter_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/blastfilter_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=hspfilter_culling_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=hspstream_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=hspfilter_culling_unit_test -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=hspstream_unit_test -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/hspfilter_culling_unit_test.cpp:37: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/hspstream_unit_test.cpp:37: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -39648,13 +39826,13 @@ 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/hspfilter_culling_unit_test.cpp:37: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/hspstream_unit_test.cpp:37: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/hspfilter_culling_unit_test.cpp:37: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/hspstream_unit_test.cpp:37: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -39677,20 +39855,20 @@ /bin/ln -f hspfilter_besthit_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/hspfilter_besthit_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=hspstream_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=linkhsp_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=hspstream_unit_test -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=linkhsp_unit_test -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/hspstream_unit_test.cpp:37: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp:34: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -39782,13 +39960,13 @@ 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/hspstream_unit_test.cpp:37: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp:34: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/hspstream_unit_test.cpp:37: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp:34: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -39804,38 +39982,6 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, - from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, - from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, - from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, - from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, - from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, - from /usr/include/boost/shared_ptr.hpp:17, - from /usr/include/boost/test/tools/assertion_result.hpp:21, - from /usr/include/boost/test/tools/old/impl.hpp:20, - from /usr/include/boost/test/test_tools.hpp:46, - from /usr/include/boost/test/unit_test.hpp:18, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/hspfilter_culling_unit_test.cpp:37: -/usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' - 14 | BOOST_HEADER_DEPRECATED( "" ) - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, - from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, - from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, - from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, - from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, - from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, - from /usr/include/boost/shared_ptr.hpp:17, - from /usr/include/boost/test/tools/assertion_result.hpp:21, - from /usr/include/boost/test/tools/old/impl.hpp:20, - from /usr/include/boost/test/test_tools.hpp:46, - from /usr/include/boost/test/unit_test.hpp:18, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/hspstream_unit_test.cpp:37: -/usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' - 14 | BOOST_HEADER_DEPRECATED( "" ) - | ^~~~~~~~~~~~~~~~~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=hspfilter_culling_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/hspfilter_culling_unit_test.cpp -o hspfilter_culling_unit_test.o /usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie hspfilter_culling_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -ldl -llmdb -lpthread -ldl -lm -lpthread -o hspfilter_culling_unit_test @@ -39843,20 +39989,20 @@ /bin/ln -f hspfilter_culling_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/hspfilter_culling_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=linkhsp_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=msa2pssm_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=linkhsp_unit_test -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=msa2pssm_unit_test -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/msa2pssm_unit_test.cpp:37: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -39948,13 +40094,13 @@ 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/msa2pssm_unit_test.cpp:37: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/msa2pssm_unit_test.cpp:37: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -39982,163 +40128,44 @@ from /usr/include/boost/test/test_tools.hpp:46, from /usr/include/boost/test/unit_test.hpp:18, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/hspstream_unit_test.cpp:37: +/usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' + 14 | BOOST_HEADER_DEPRECATED( "" ) + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, + from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, + from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, + from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, + from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, + from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, + from /usr/include/boost/shared_ptr.hpp:17, + from /usr/include/boost/test/tools/assertion_result.hpp:21, + from /usr/include/boost/test/tools/old/impl.hpp:20, + from /usr/include/boost/test/test_tools.hpp:46, + from /usr/include/boost/test/unit_test.hpp:18, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp:34: /usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' 14 | BOOST_HEADER_DEPRECATED( "" ) | ^~~~~~~~~~~~~~~~~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=hspstream_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/hspstream_unit_test.cpp -o hspstream_unit_test.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=hspstream_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/hspstream_test_util.cpp -o hspstream_test_util.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie hspstream_unit_test.o hspstream_test_util.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -ldl -llmdb -lpthread -ldl -lm -lpthread -o hspstream_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f hspstream_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin -/bin/ln -f hspstream_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/hspstream_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=msa2pssm_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=msa2pssm_unit_test -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/msa2pssm_unit_test.cpp:37: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/msa2pssm_unit_test.cpp:37: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/msa2pssm_unit_test.cpp:37: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=blastsetup_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp -o blastsetup_unit_test.o /usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie blastsetup_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -ldl -ldl -lm -lpthread -o blastsetup_unit_test /bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastsetup_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin /bin/ln -f blastsetup_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/blastsetup_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=ntlookup_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=ntlookup_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=ntlookup_unit_test -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=ntlookup_unit_test -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/ntlookup_unit_test.cpp:34: @@ -40267,7 +40294,7 @@ from /usr/include/boost/test/test_tools.hpp:46, from /usr/include/boost/test/unit_test.hpp:18, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/ntlookup_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/msa2pssm_unit_test.cpp:37: /usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' 14 | BOOST_HEADER_DEPRECATED( "" ) | ^~~~~~~~~~~~~~~~~~~~~~~ @@ -40283,28 +40310,29 @@ from /usr/include/boost/test/test_tools.hpp:46, from /usr/include/boost/test/unit_test.hpp:18, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/msa2pssm_unit_test.cpp:37: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/ntlookup_unit_test.cpp:34: /usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' 14 | BOOST_HEADER_DEPRECATED( "" ) | ^~~~~~~~~~~~~~~~~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=linkhsp_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp -o linkhsp_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie linkhsp_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -ldl -ldl -lm -lpthread -o linkhsp_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f linkhsp_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin -/bin/ln -f linkhsp_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/linkhsp_unit_test +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=hspstream_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/hspstream_unit_test.cpp -o hspstream_unit_test.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=hspstream_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/hspstream_test_util.cpp -o hspstream_test_util.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie hspstream_unit_test.o hspstream_test_util.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -ldl -llmdb -lpthread -ldl -lm -lpthread -o hspstream_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f hspstream_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin +/bin/ln -f hspstream_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/hspstream_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=ntscan_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=ntscan_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=ntscan_unit_test -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=ntscan_unit_test -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/ntscan_unit_test.cpp:34: @@ -40428,17 +40456,17 @@ /bin/ln -f msa2pssm_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/msa2pssm_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=optionshandle_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=optionshandle_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=optionshandle_unit_test -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=optionshandle_unit_test -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/optionshandle_unit_test.cpp:34: @@ -40588,23 +40616,23 @@ 14 | BOOST_HEADER_DEPRECATED( "" ) | ^~~~~~~~~~~~~~~~~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=ntlookup_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/ntlookup_unit_test.cpp -o ntlookup_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie ntlookup_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -ldl -ldl -lm -lpthread -o ntlookup_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f ntlookup_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin -/bin/ln -f ntlookup_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/ntlookup_unit_test +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=linkhsp_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp -o linkhsp_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie linkhsp_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -ldl -ldl -lm -lpthread -o linkhsp_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f linkhsp_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin +/bin/ln -f linkhsp_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/linkhsp_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=phiblast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=phiblast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=phiblast_unit_test -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=phiblast_unit_test -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/phiblast_unit_test.cpp:34: @@ -40738,23 +40766,23 @@ 14 | BOOST_HEADER_DEPRECATED( "" ) | ^~~~~~~~~~~~~~~~~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=ntscan_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/ntscan_unit_test.cpp -o ntscan_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie ntscan_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -ldl -ldl -lm -lpthread -o ntscan_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f ntscan_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin -/bin/ln -f ntscan_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/ntscan_unit_test +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=ntlookup_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/ntlookup_unit_test.cpp -o ntlookup_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie ntlookup_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -ldl -ldl -lm -lpthread -o ntlookup_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f ntlookup_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin +/bin/ln -f ntlookup_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/ntlookup_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=prelimsearch_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=prelimsearch_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=prelimsearch_unit_test -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=prelimsearch_unit_test -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/prelimsearch_unit_test.cpp:34: @@ -40871,24 +40899,6 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=phiblast_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/phiblast_unit_test.cpp -o phiblast_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie phiblast_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -ldl -llmdb -lpthread -ldl -lm -lpthread -o phiblast_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f phiblast_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin -/bin/ln -f phiblast_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/phiblast_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=psibl2seq_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=psibl2seq_unit_test -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, @@ -40905,6 +40915,24 @@ /usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' 14 | BOOST_HEADER_DEPRECATED( "" ) | ^~~~~~~~~~~~~~~~~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=phiblast_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/phiblast_unit_test.cpp -o phiblast_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie phiblast_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -ldl -llmdb -lpthread -ldl -lm -lpthread -o phiblast_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f phiblast_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin +/bin/ln -f phiblast_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/phiblast_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=psibl2seq_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=psibl2seq_unit_test -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/psibl2seq_unit_test.cpp:34: @@ -41038,23 +41066,23 @@ 14 | BOOST_HEADER_DEPRECATED( "" ) | ^~~~~~~~~~~~~~~~~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=optionshandle_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/optionshandle_unit_test.cpp -o optionshandle_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie optionshandle_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -ldl -llmdb -lpthread -ldl -lm -lpthread -o optionshandle_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f optionshandle_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin -/bin/ln -f optionshandle_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/optionshandle_unit_test +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=ntscan_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/ntscan_unit_test.cpp -o ntscan_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie ntscan_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -ldl -ldl -lm -lpthread -o ntscan_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f ntscan_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin +/bin/ln -f ntscan_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/ntscan_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=psiblast_iteration_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=psiblast_iteration_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=psiblast_iteration_unit_test -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=psiblast_iteration_unit_test -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/psiblast_iteration_unit_test.cpp:34: @@ -41188,26 +41216,26 @@ 14 | BOOST_HEADER_DEPRECATED( "" ) | ^~~~~~~~~~~~~~~~~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=psiblast_iteration_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/psiblast_iteration_unit_test.cpp -o psiblast_iteration_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie psiblast_iteration_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -ldl -llmdb -lpthread -ldl -lm -lpthread -o psiblast_iteration_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f psiblast_iteration_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin -/bin/ln -f psiblast_iteration_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/psiblast_iteration_unit_test +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=prelimsearch_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/prelimsearch_unit_test.cpp -o prelimsearch_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie prelimsearch_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -ldl -ldl -lm -lpthread -o prelimsearch_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f prelimsearch_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin +/bin/ln -f prelimsearch_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/prelimsearch_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=pssmcreate_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=pssmcreate_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=pssmcreate_unit_test -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=pssmcreate_unit_test -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp:35: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -41299,13 +41327,13 @@ 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp:35: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp:35: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -41323,7 +41351,7 @@ | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/pssm_test_util.cpp:36: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:34: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -41415,13 +41443,13 @@ 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/pssm_test_util.cpp:36: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:34: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/pssm_test_util.cpp:36: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:34: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -41439,7 +41467,7 @@ | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/pssm_test_util.cpp:36: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -41531,13 +41559,13 @@ 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/pssm_test_util.cpp:36: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/pssm_test_util.cpp:36: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -41554,23 +41582,23 @@ 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=prelimsearch_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/prelimsearch_unit_test.cpp -o prelimsearch_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie prelimsearch_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -ldl -ldl -lm -lpthread -o prelimsearch_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f prelimsearch_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin -/bin/ln -f prelimsearch_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/prelimsearch_unit_test +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=optionshandle_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/optionshandle_unit_test.cpp -o optionshandle_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie optionshandle_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -ldl -llmdb -lpthread -ldl -lm -lpthread -o optionshandle_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f optionshandle_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin +/bin/ln -f optionshandle_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/optionshandle_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=pssmenginefreqratios_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=pssmenginefreqratios_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=pssmenginefreqratios_unit_test -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=pssmenginefreqratios_unit_test -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/pssmenginefreqratios_unit_test.cpp:34: @@ -41699,23 +41727,7 @@ from /usr/include/boost/test/test_tools.hpp:46, from /usr/include/boost/test/unit_test.hpp:18, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp:35: -/usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' - 14 | BOOST_HEADER_DEPRECATED( "" ) - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, - from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, - from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, - from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, - from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, - from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, - from /usr/include/boost/shared_ptr.hpp:17, - from /usr/include/boost/test/tools/assertion_result.hpp:21, - from /usr/include/boost/test/tools/old/impl.hpp:20, - from /usr/include/boost/test/test_tools.hpp:46, - from /usr/include/boost/test/unit_test.hpp:18, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/pssm_test_util.cpp:36: /usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' 14 | BOOST_HEADER_DEPRECATED( "" ) | ^~~~~~~~~~~~~~~~~~~~~~~ @@ -41731,7 +41743,7 @@ from /usr/include/boost/test/test_tools.hpp:46, from /usr/include/boost/test/unit_test.hpp:18, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/pssm_test_util.cpp:36: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp:35: /usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' 14 | BOOST_HEADER_DEPRECATED( "" ) | ^~~~~~~~~~~~~~~~~~~~~~~ @@ -41747,28 +41759,28 @@ from /usr/include/boost/test/test_tools.hpp:46, from /usr/include/boost/test/unit_test.hpp:18, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/pssmenginefreqratios_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:34: /usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' 14 | BOOST_HEADER_DEPRECATED( "" ) | ^~~~~~~~~~~~~~~~~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=psibl2seq_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/psibl2seq_unit_test.cpp -o psibl2seq_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie psibl2seq_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -ldl -ldl -lm -lpthread -o psibl2seq_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f psibl2seq_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin -/bin/ln -f psibl2seq_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/psibl2seq_unit_test +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=psiblast_iteration_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/psiblast_iteration_unit_test.cpp -o psiblast_iteration_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie psiblast_iteration_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -ldl -llmdb -lpthread -ldl -lm -lpthread -o psiblast_iteration_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f psiblast_iteration_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin +/bin/ln -f psiblast_iteration_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/psiblast_iteration_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=querydata_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=querydata_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=querydata_unit_test -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=querydata_unit_test -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:34: @@ -41897,88 +41909,28 @@ from /usr/include/boost/test/test_tools.hpp:46, from /usr/include/boost/test/unit_test.hpp:18, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/pssmenginefreqratios_unit_test.cpp:34: /usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' 14 | BOOST_HEADER_DEPRECATED( "" ) | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:72, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/expr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/pssmenginefreqratios_unit_test.cpp:34: -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/10/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 509 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:67, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/expr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/pssmenginefreqratios_unit_test.cpp:34: -/usr/include/c++/10/bits/stl_vector.h: In member function 'void PssmEngineFreqRatios::AllZerosFreqRatios::test_method()': -/usr/include/c++/10/bits/stl_vector.h:960:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 960 | _M_fill_insert(end(), __new_size - size(), __x); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:72, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/expr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp:35: -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = PSICdMsaCellData; _Alloc = std::allocator]': -/usr/include/c++/10/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 509 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:67, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/expr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp:35: -/usr/include/c++/10/bits/stl_vector.h: In constructor 'CPssmInputWithSingleCD::CPssmInputWithSingleCD()': -/usr/include/c++/10/bits/stl_vector.h:960:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 960 | _M_fill_insert(end(), __new_size - size(), __x); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=pssmenginefreqratios_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/pssmenginefreqratios_unit_test.cpp -o pssmenginefreqratios_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie pssmenginefreqratios_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -ldl -ldl -lm -lpthread -o pssmenginefreqratios_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f pssmenginefreqratios_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin -/bin/ln -f pssmenginefreqratios_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/pssmenginefreqratios_unit_test +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=psibl2seq_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/psibl2seq_unit_test.cpp -o psibl2seq_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie psibl2seq_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -ldl -ldl -lm -lpthread -o psibl2seq_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f psibl2seq_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin +/bin/ln -f psibl2seq_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/psibl2seq_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=queryinfo_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=queryinfo_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=queryinfo_unit_test -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=queryinfo_unit_test -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp:34: @@ -42107,30 +42059,104 @@ from /usr/include/boost/test/test_tools.hpp:46, from /usr/include/boost/test/unit_test.hpp:18, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:34: +/usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' + 14 | BOOST_HEADER_DEPRECATED( "" ) + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, + from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, + from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, + from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, + from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, + from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, + from /usr/include/boost/shared_ptr.hpp:17, + from /usr/include/boost/test/tools/assertion_result.hpp:21, + from /usr/include/boost/test/tools/old/impl.hpp:20, + from /usr/include/boost/test/test_tools.hpp:46, + from /usr/include/boost/test/unit_test.hpp:18, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp:34: /usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' 14 | BOOST_HEADER_DEPRECATED( "" ) | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/vector:72, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/expr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/pssmenginefreqratios_unit_test.cpp:34: +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/10/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 509 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/vector:67, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/expr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/pssmenginefreqratios_unit_test.cpp:34: +/usr/include/c++/10/bits/stl_vector.h: In member function 'void PssmEngineFreqRatios::AllZerosFreqRatios::test_method()': +/usr/include/c++/10/bits/stl_vector.h:960:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 960 | _M_fill_insert(end(), __new_size - size(), __x); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/vector:72, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/expr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp:35: +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = PSICdMsaCellData; _Alloc = std::allocator]': +/usr/include/c++/10/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 509 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/vector:67, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/expr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp:35: +/usr/include/c++/10/bits/stl_vector.h: In constructor 'CPssmInputWithSingleCD::CPssmInputWithSingleCD()': +/usr/include/c++/10/bits/stl_vector.h:960:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 960 | _M_fill_insert(end(), __new_size - size(), __x); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/../../api -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/../../core -DNCBI_APP_BUILT_AS=pssmcreate_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp -o pssmcreate_unit_test.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/../../api -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/../../core -DNCBI_APP_BUILT_AS=pssmcreate_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/pssm_test_util.cpp -o pssm_test_util.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/../../api -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/../../core -DNCBI_APP_BUILT_AS=pssmcreate_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp -o pssmcreate_cdd_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie pssmcreate_unit_test.o pssm_test_util.o pssmcreate_cdd_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -ldl -ldl -lm -lpthread -o pssmcreate_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f pssmcreate_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin -/bin/ln -f pssmcreate_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/pssmcreate_unit_test +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=pssmenginefreqratios_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/pssmenginefreqratios_unit_test.cpp -o pssmenginefreqratios_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie pssmenginefreqratios_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -ldl -ldl -lm -lpthread -o pssmenginefreqratios_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f pssmenginefreqratios_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin +/bin/ln -f pssmenginefreqratios_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/pssmenginefreqratios_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=remote_blast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=remote_blast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=remote_blast_unit_test -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=remote_blast_unit_test -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp:35: @@ -42247,24 +42273,40 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, + from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, + from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, + from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, + from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, + from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, + from /usr/include/boost/shared_ptr.hpp:17, + from /usr/include/boost/test/tools/assertion_result.hpp:21, + from /usr/include/boost/test/tools/old/impl.hpp:20, + from /usr/include/boost/test/test_tools.hpp:46, + from /usr/include/boost/test/unit_test.hpp:18, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp:35: +/usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' + 14 | BOOST_HEADER_DEPRECATED( "" ) + | ^~~~~~~~~~~~~~~~~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=querydata_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp -o querydata_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie querydata_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -ldl -ldl -lm -lpthread -o querydata_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f querydata_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin -/bin/ln -f querydata_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/querydata_unit_test +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=queryinfo_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp -o queryinfo_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie queryinfo_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -ldl -ldl -lm -lpthread -o queryinfo_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f queryinfo_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin +/bin/ln -f queryinfo_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/queryinfo_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=rmblast_blasthits_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=rmblast_blasthits_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=rmblast_blasthits_unit_test -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=rmblast_blasthits_unit_test -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/rmblast_blasthits_unit_test.cpp:34: @@ -42381,56 +42423,26 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, - from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, - from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, - from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, - from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, - from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, - from /usr/include/boost/shared_ptr.hpp:17, - from /usr/include/boost/test/tools/assertion_result.hpp:21, - from /usr/include/boost/test/tools/old/impl.hpp:20, - from /usr/include/boost/test/test_tools.hpp:46, - from /usr/include/boost/test/unit_test.hpp:18, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp:35: -/usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' - 14 | BOOST_HEADER_DEPRECATED( "" ) - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, - from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, - from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, - from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, - from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, - from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, - from /usr/include/boost/shared_ptr.hpp:17, - from /usr/include/boost/test/tools/assertion_result.hpp:21, - from /usr/include/boost/test/tools/old/impl.hpp:20, - from /usr/include/boost/test/test_tools.hpp:46, - from /usr/include/boost/test/unit_test.hpp:18, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/rmblast_blasthits_unit_test.cpp:34: -/usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' - 14 | BOOST_HEADER_DEPRECATED( "" ) - | ^~~~~~~~~~~~~~~~~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=queryinfo_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp -o queryinfo_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie queryinfo_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -ldl -ldl -lm -lpthread -o queryinfo_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f queryinfo_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin -/bin/ln -f queryinfo_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/queryinfo_unit_test +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/../../api -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/../../core -DNCBI_APP_BUILT_AS=pssmcreate_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp -o pssmcreate_unit_test.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/../../api -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/../../core -DNCBI_APP_BUILT_AS=pssmcreate_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/pssm_test_util.cpp -o pssm_test_util.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/../../api -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/../../core -DNCBI_APP_BUILT_AS=pssmcreate_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp -o pssmcreate_cdd_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie pssmcreate_unit_test.o pssm_test_util.o pssmcreate_cdd_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -ldl -ldl -lm -lpthread -o pssmcreate_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f pssmcreate_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin +/bin/ln -f pssmcreate_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/pssmcreate_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=rmblast_traceback_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=rmblast_traceback_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=rmblast_traceback_unit_test -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=rmblast_traceback_unit_test -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/rmblast_traceback_unit_test.cpp:34: @@ -42559,28 +42571,28 @@ from /usr/include/boost/test/test_tools.hpp:46, from /usr/include/boost/test/unit_test.hpp:18, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/rmblast_traceback_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/rmblast_blasthits_unit_test.cpp:34: /usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' 14 | BOOST_HEADER_DEPRECATED( "" ) | ^~~~~~~~~~~~~~~~~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/../../api -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/../../core -DNCBI_APP_BUILT_AS=rmblast_blasthits_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/rmblast_blasthits_unit_test.cpp -o rmblast_blasthits_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie rmblast_blasthits_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -ldl -ldl -lm -lpthread -o rmblast_blasthits_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f rmblast_blasthits_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin -/bin/ln -f rmblast_blasthits_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/rmblast_blasthits_unit_test +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=querydata_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp -o querydata_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie querydata_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -ldl -ldl -lm -lpthread -o querydata_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f querydata_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin +/bin/ln -f querydata_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/querydata_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=rps_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=rps_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=rps_unit_test -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=rps_unit_test -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/rps_unit_test.cpp:34: @@ -42709,28 +42721,44 @@ from /usr/include/boost/test/test_tools.hpp:46, from /usr/include/boost/test/unit_test.hpp:18, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/rmblast_traceback_unit_test.cpp:34: +/usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' + 14 | BOOST_HEADER_DEPRECATED( "" ) + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, + from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, + from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, + from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, + from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, + from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, + from /usr/include/boost/shared_ptr.hpp:17, + from /usr/include/boost/test/tools/assertion_result.hpp:21, + from /usr/include/boost/test/tools/old/impl.hpp:20, + from /usr/include/boost/test/test_tools.hpp:46, + from /usr/include/boost/test/unit_test.hpp:18, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/rps_unit_test.cpp:34: /usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' 14 | BOOST_HEADER_DEPRECATED( "" ) | ^~~~~~~~~~~~~~~~~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=rmblast_traceback_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/rmblast_traceback_unit_test.cpp -o rmblast_traceback_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie rmblast_traceback_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -ldl -ldl -lm -lpthread -o rmblast_traceback_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f rmblast_traceback_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin -/bin/ln -f rmblast_traceback_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/rmblast_traceback_unit_test +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/../../api -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/../../core -DNCBI_APP_BUILT_AS=rmblast_blasthits_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/rmblast_blasthits_unit_test.cpp -o rmblast_blasthits_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie rmblast_blasthits_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -ldl -ldl -lm -lpthread -o rmblast_blasthits_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f rmblast_blasthits_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin +/bin/ln -f rmblast_blasthits_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/rmblast_blasthits_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=scoreblk_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=scoreblk_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=scoreblk_unit_test -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=scoreblk_unit_test -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/scoreblk_unit_test.cpp:34: @@ -42864,23 +42892,23 @@ 14 | BOOST_HEADER_DEPRECATED( "" ) | ^~~~~~~~~~~~~~~~~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=rps_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/rps_unit_test.cpp -o rps_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie rps_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -ldl -ldl -lm -lpthread -o rps_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f rps_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin -/bin/ln -f rps_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/rps_unit_test +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=rmblast_traceback_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/rmblast_traceback_unit_test.cpp -o rmblast_traceback_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie rmblast_traceback_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -ldl -ldl -lm -lpthread -o rmblast_traceback_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f rmblast_traceback_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin +/bin/ln -f rmblast_traceback_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/rmblast_traceback_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=search_strategy_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=search_strategy_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=search_strategy_unit_test -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=search_strategy_unit_test -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/search_strategy_unit_test.cpp:34: @@ -43014,23 +43042,23 @@ 14 | BOOST_HEADER_DEPRECATED( "" ) | ^~~~~~~~~~~~~~~~~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=scoreblk_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/scoreblk_unit_test.cpp -o scoreblk_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie scoreblk_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -ldl -ldl -lm -lpthread -o scoreblk_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f scoreblk_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin -/bin/ln -f scoreblk_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/scoreblk_unit_test +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=rps_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/rps_unit_test.cpp -o rps_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie rps_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -ldl -ldl -lm -lpthread -o rps_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f rps_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin +/bin/ln -f rps_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/rps_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=seqinfosrc_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=seqinfosrc_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=seqinfosrc_unit_test -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=seqinfosrc_unit_test -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/seqinfosrc_unit_test.cpp:35: @@ -43147,27 +43175,43 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, + from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, + from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, + from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, + from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, + from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, + from /usr/include/boost/shared_ptr.hpp:17, + from /usr/include/boost/test/tools/assertion_result.hpp:21, + from /usr/include/boost/test/tools/old/impl.hpp:20, + from /usr/include/boost/test/test_tools.hpp:46, + from /usr/include/boost/test/unit_test.hpp:18, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/seqinfosrc_unit_test.cpp:35: +/usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' + 14 | BOOST_HEADER_DEPRECATED( "" ) + | ^~~~~~~~~~~~~~~~~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=remote_blast_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp -o remote_blast_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie remote_blast_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -ldl -ldl -lm -lpthread -o remote_blast_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f remote_blast_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin -/bin/ln -f remote_blast_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/remote_blast_unit_test +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=scoreblk_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/scoreblk_unit_test.cpp -o scoreblk_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie scoreblk_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -ldl -ldl -lm -lpthread -o scoreblk_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f scoreblk_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin +/bin/ln -f scoreblk_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/scoreblk_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=seqsrc_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=seqsrc_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=seqsrc_unit_test -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=seqsrc_unit_test -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/seqsrc_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/mockseqsrc2_unit_test.cpp:35: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -43259,13 +43303,13 @@ 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/seqsrc_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/mockseqsrc2_unit_test.cpp:35: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/seqsrc_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/mockseqsrc2_unit_test.cpp:35: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -43397,57 +43441,9 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, - from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, - from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, - from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, - from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, - from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, - from /usr/include/boost/shared_ptr.hpp:17, - from /usr/include/boost/test/tools/assertion_result.hpp:21, - from /usr/include/boost/test/tools/old/impl.hpp:20, - from /usr/include/boost/test/test_tools.hpp:46, - from /usr/include/boost/test/unit_test.hpp:18, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/seqinfosrc_unit_test.cpp:35: -/usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' - 14 | BOOST_HEADER_DEPRECATED( "" ) - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, - from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, - from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, - from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, - from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, - from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, - from /usr/include/boost/shared_ptr.hpp:17, - from /usr/include/boost/test/tools/assertion_result.hpp:21, - from /usr/include/boost/test/tools/old/impl.hpp:20, - from /usr/include/boost/test/test_tools.hpp:46, - from /usr/include/boost/test/unit_test.hpp:18, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/mockseqsrc1_unit_test.cpp:34: -/usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' - 14 | BOOST_HEADER_DEPRECATED( "" ) - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, - from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, - from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, - from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, - from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, - from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, - from /usr/include/boost/shared_ptr.hpp:17, - from /usr/include/boost/test/tools/assertion_result.hpp:21, - from /usr/include/boost/test/tools/old/impl.hpp:20, - from /usr/include/boost/test/test_tools.hpp:46, - from /usr/include/boost/test/unit_test.hpp:18, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/seqsrc_unit_test.cpp:34: -/usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' - 14 | BOOST_HEADER_DEPRECATED( "" ) - | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/mockseqsrc2_unit_test.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/seqsrc_unit_test.cpp:34: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -43539,13 +43535,13 @@ 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/mockseqsrc2_unit_test.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/seqsrc_unit_test.cpp:34: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/mockseqsrc2_unit_test.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/seqsrc_unit_test.cpp:34: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -43561,40 +43557,24 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, - from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, - from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, - from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, - from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, - from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, - from /usr/include/boost/shared_ptr.hpp:17, - from /usr/include/boost/test/tools/assertion_result.hpp:21, - from /usr/include/boost/test/tools/old/impl.hpp:20, - from /usr/include/boost/test/test_tools.hpp:46, - from /usr/include/boost/test/unit_test.hpp:18, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/mockseqsrc2_unit_test.cpp:35: -/usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' - 14 | BOOST_HEADER_DEPRECATED( "" ) - | ^~~~~~~~~~~~~~~~~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=seqinfosrc_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/seqinfosrc_unit_test.cpp -o seqinfosrc_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie seqinfosrc_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -ldl -ldl -lm -lpthread -o seqinfosrc_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqinfosrc_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin -/bin/ln -f seqinfosrc_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/seqinfosrc_unit_test +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=remote_blast_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp -o remote_blast_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie remote_blast_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -ldl -ldl -lm -lpthread -o remote_blast_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f remote_blast_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin +/bin/ln -f remote_blast_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/remote_blast_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=setupfactory_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=setupfactory_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=setupfactory_unit_test -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=setupfactory_unit_test -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/setupfactory_unit_test.cpp:34: @@ -43723,28 +43703,76 @@ from /usr/include/boost/test/test_tools.hpp:46, from /usr/include/boost/test/unit_test.hpp:18, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/mockseqsrc2_unit_test.cpp:35: +/usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' + 14 | BOOST_HEADER_DEPRECATED( "" ) + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, + from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, + from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, + from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, + from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, + from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, + from /usr/include/boost/shared_ptr.hpp:17, + from /usr/include/boost/test/tools/assertion_result.hpp:21, + from /usr/include/boost/test/tools/old/impl.hpp:20, + from /usr/include/boost/test/test_tools.hpp:46, + from /usr/include/boost/test/unit_test.hpp:18, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/mockseqsrc1_unit_test.cpp:34: +/usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' + 14 | BOOST_HEADER_DEPRECATED( "" ) + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, + from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, + from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, + from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, + from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, + from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, + from /usr/include/boost/shared_ptr.hpp:17, + from /usr/include/boost/test/tools/assertion_result.hpp:21, + from /usr/include/boost/test/tools/old/impl.hpp:20, + from /usr/include/boost/test/test_tools.hpp:46, + from /usr/include/boost/test/unit_test.hpp:18, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/seqsrc_unit_test.cpp:34: +/usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' + 14 | BOOST_HEADER_DEPRECATED( "" ) + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, + from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, + from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, + from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, + from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, + from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, + from /usr/include/boost/shared_ptr.hpp:17, + from /usr/include/boost/test/tools/assertion_result.hpp:21, + from /usr/include/boost/test/tools/old/impl.hpp:20, + from /usr/include/boost/test/test_tools.hpp:46, + from /usr/include/boost/test/unit_test.hpp:18, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/setupfactory_unit_test.cpp:34: /usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' 14 | BOOST_HEADER_DEPRECATED( "" ) | ^~~~~~~~~~~~~~~~~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=search_strategy_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/search_strategy_unit_test.cpp -o search_strategy_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie search_strategy_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -ldl -ldl -lm -lpthread -o search_strategy_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f search_strategy_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin -/bin/ln -f search_strategy_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/search_strategy_unit_test +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=seqinfosrc_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/seqinfosrc_unit_test.cpp -o seqinfosrc_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie seqinfosrc_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -ldl -ldl -lm -lpthread -o seqinfosrc_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqinfosrc_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin +/bin/ln -f seqinfosrc_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/seqinfosrc_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=split_query_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=split_query_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=split_query_unit_test -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=split_query_unit_test -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/split_query_unit_test.cpp:34: @@ -43878,26 +43906,23 @@ 14 | BOOST_HEADER_DEPRECATED( "" ) | ^~~~~~~~~~~~~~~~~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=seqsrc_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/seqsrc_unit_test.cpp -o seqsrc_unit_test.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=seqsrc_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/seqsrc_mock.cpp -o seqsrc_mock.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=seqsrc_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/mockseqsrc1_unit_test.cpp -o mockseqsrc1_unit_test.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=seqsrc_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/mockseqsrc2_unit_test.cpp -o mockseqsrc2_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie seqsrc_unit_test.o seqsrc_mock.o mockseqsrc1_unit_test.o mockseqsrc2_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -ldl -ldl -lm -lpthread -o seqsrc_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqsrc_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin -/bin/ln -f seqsrc_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/seqsrc_unit_test +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=search_strategy_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/search_strategy_unit_test.cpp -o search_strategy_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie search_strategy_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -ldl -ldl -lm -lpthread -o search_strategy_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f search_strategy_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin +/bin/ln -f search_strategy_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/search_strategy_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=stat_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=stat_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=stat_unit_test -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=stat_unit_test -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/stat_unit_test.cpp:34: @@ -44021,17 +44046,17 @@ /bin/ln -f setupfactory_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/setupfactory_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=subj_ranges_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=subj_ranges_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=subj_ranges_unit_test -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=subj_ranges_unit_test -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/subj_ranges_unit_test.cpp:39: @@ -44148,7 +44173,12 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=seqsrc_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/seqsrc_unit_test.cpp -o seqsrc_unit_test.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=seqsrc_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/seqsrc_mock.cpp -o seqsrc_mock.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=seqsrc_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/mockseqsrc1_unit_test.cpp -o mockseqsrc1_unit_test.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=seqsrc_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/mockseqsrc2_unit_test.cpp -o mockseqsrc2_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie seqsrc_unit_test.o seqsrc_mock.o mockseqsrc1_unit_test.o mockseqsrc2_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsIn file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, @@ -44164,24 +44194,22 @@ /usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' 14 | BOOST_HEADER_DEPRECATED( "" ) | ^~~~~~~~~~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=stat_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/stat_unit_test.cpp -o stat_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie stat_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -ldl -llmdb -lpthread -ldl -lm -lpthread -o stat_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f stat_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin -/bin/ln -f stat_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/stat_unit_test +ubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -ldl -ldl -lm -lpthread -o seqsrc_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqsrc_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin +/bin/ln -f seqsrc_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/seqsrc_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=traceback_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=traceback_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=traceback_unit_test -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=traceback_unit_test -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp:34: @@ -44298,56 +44326,24 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, - from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, - from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, - from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, - from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, - from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, - from /usr/include/boost/shared_ptr.hpp:17, - from /usr/include/boost/test/tools/assertion_result.hpp:21, - from /usr/include/boost/test/tools/old/impl.hpp:20, - from /usr/include/boost/test/test_tools.hpp:46, - from /usr/include/boost/test/unit_test.hpp:18, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/subj_ranges_unit_test.cpp:39: -/usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' - 14 | BOOST_HEADER_DEPRECATED( "" ) - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, - from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, - from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, - from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, - from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, - from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, - from /usr/include/boost/shared_ptr.hpp:17, - from /usr/include/boost/test/tools/assertion_result.hpp:21, - from /usr/include/boost/test/tools/old/impl.hpp:20, - from /usr/include/boost/test/test_tools.hpp:46, - from /usr/include/boost/test/unit_test.hpp:18, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp:34: -/usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' - 14 | BOOST_HEADER_DEPRECATED( "" ) - | ^~~~~~~~~~~~~~~~~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=subj_ranges_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/subj_ranges_unit_test.cpp -o subj_ranges_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie subj_ranges_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -ldl -ldl -lm -lpthread -o subj_ranges_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f subj_ranges_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin -/bin/ln -f subj_ranges_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/subj_ranges_unit_test +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=stat_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/stat_unit_test.cpp -o stat_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie stat_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -ldl -llmdb -lpthread -ldl -lm -lpthread -o stat_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f stat_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin +/bin/ln -f stat_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/stat_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=tracebacksearch_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=tracebacksearch_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=tracebacksearch_unit_test -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=tracebacksearch_unit_test -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/tracebacksearch_unit_test.cpp:34: @@ -44476,28 +44472,60 @@ from /usr/include/boost/test/test_tools.hpp:46, from /usr/include/boost/test/unit_test.hpp:18, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/subj_ranges_unit_test.cpp:39: +/usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' + 14 | BOOST_HEADER_DEPRECATED( "" ) + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, + from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, + from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, + from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, + from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, + from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, + from /usr/include/boost/shared_ptr.hpp:17, + from /usr/include/boost/test/tools/assertion_result.hpp:21, + from /usr/include/boost/test/tools/old/impl.hpp:20, + from /usr/include/boost/test/test_tools.hpp:46, + from /usr/include/boost/test/unit_test.hpp:18, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp:34: +/usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' + 14 | BOOST_HEADER_DEPRECATED( "" ) + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, + from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, + from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, + from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, + from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, + from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, + from /usr/include/boost/shared_ptr.hpp:17, + from /usr/include/boost/test/tools/assertion_result.hpp:21, + from /usr/include/boost/test/tools/old/impl.hpp:20, + from /usr/include/boost/test/test_tools.hpp:46, + from /usr/include/boost/test/unit_test.hpp:18, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/tracebacksearch_unit_test.cpp:34: /usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' 14 | BOOST_HEADER_DEPRECATED( "" ) | ^~~~~~~~~~~~~~~~~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=split_query_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/split_query_unit_test.cpp -o split_query_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie split_query_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -ldl -ldl -lm -lpthread -o split_query_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f split_query_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin -/bin/ln -f split_query_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/split_query_unit_test +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=subj_ranges_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/subj_ranges_unit_test.cpp -o subj_ranges_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie subj_ranges_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -ldl -ldl -lm -lpthread -o subj_ranges_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f subj_ranges_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin +/bin/ln -f subj_ranges_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/subj_ranges_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=uniform_search_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=uniform_search_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=uniform_search_unit_test -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=uniform_search_unit_test -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/uniform_search_unit_test.cpp:35: @@ -44631,23 +44659,23 @@ 14 | BOOST_HEADER_DEPRECATED( "" ) | ^~~~~~~~~~~~~~~~~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=traceback_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp -o traceback_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie traceback_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -ldl -ldl -lm -lpthread -o traceback_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f traceback_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin -/bin/ln -f traceback_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/traceback_unit_test +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=split_query_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/split_query_unit_test.cpp -o split_query_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie split_query_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -ldl -ldl -lm -lpthread -o split_query_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f split_query_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin +/bin/ln -f split_query_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/split_query_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=version_reference_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=version_reference_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=version_reference_unit_test -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=version_reference_unit_test -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/version_reference_unit_test.cpp:34: @@ -44771,33 +44799,17 @@ /bin/ln -f tracebacksearch_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/tracebacksearch_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd app/blastdb/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=convert2blastmask LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd app/blastdb/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=convert2blastmask LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blastdb TMPL=convert2blastmask -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, - from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, - from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, - from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, - from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, - from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, - from /usr/include/boost/shared_ptr.hpp:17, - from /usr/include/boost/test/tools/assertion_result.hpp:21, - from /usr/include/boost/test/tools/old/impl.hpp:20, - from /usr/include/boost/test/test_tools.hpp:46, - from /usr/include/boost/test/unit_test.hpp:18, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/version_reference_unit_test.cpp:34: -/usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' - 14 | BOOST_HEADER_DEPRECATED( "" ) - | ^~~~~~~~~~~~~~~~~~~~~~~ +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blastdb TMPL=convert2blastmask -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blastdb/convert2blastmask.cpp:35: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -44911,24 +44923,40 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, + from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, + from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, + from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, + from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, + from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, + from /usr/include/boost/shared_ptr.hpp:17, + from /usr/include/boost/test/tools/assertion_result.hpp:21, + from /usr/include/boost/test/tools/old/impl.hpp:20, + from /usr/include/boost/test/test_tools.hpp:46, + from /usr/include/boost/test/unit_test.hpp:18, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/version_reference_unit_test.cpp:34: +/usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' + 14 | BOOST_HEADER_DEPRECATED( "" ) + | ^~~~~~~~~~~~~~~~~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=version_reference_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/version_reference_unit_test.cpp -o version_reference_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie version_reference_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -ldl -llmdb -lpthread -ldl -lm -lpthread -o version_reference_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f version_reference_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin -/bin/ln -f version_reference_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/version_reference_unit_test +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=traceback_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp -o traceback_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie traceback_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -ldl -ldl -lm -lpthread -o traceback_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f traceback_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin +/bin/ln -f traceback_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/traceback_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd app/segmasker/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=segmasker LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd app/segmasker/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=segmasker LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/segmasker' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/segmasker' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/segmasker' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/segmasker' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/segmasker' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/segmasker TMPL=segmasker -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/segmasker TMPL=segmasker -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/segmasker/segmasker.cpp:35: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -45043,28 +45071,29 @@ 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=uniform_search_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/uniform_search_unit_test.cpp -o uniform_search_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie uniform_search_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -ldl -ldl -lm -lpthread -o uniform_search_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f uniform_search_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin -/bin/ln -f uniform_search_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/uniform_search_unit_test +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=version_reference_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/version_reference_unit_test.cpp -o version_reference_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie version_reference_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -ldl -llmdb -lpthread -ldl -lm -lpthread -o version_reference_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f version_reference_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin +/bin/ln -f version_reference_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/version_reference_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/format/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xblastformat UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/format/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xblastformat UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/format' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/format' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/format' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/format' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/format' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/format TMPL=xblastformat -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/format TMPL=xblastformat -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:37, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/format/blastxml_format.cpp:45: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/blast/format/blast_format.hpp:49, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/format/blast_format.cpp:37: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -45158,7 +45187,8 @@ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:37, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/format/blastxml_format.cpp:45: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/blast/format/blast_format.hpp:49, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/format/blast_format.cpp:37: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^ @@ -45166,7 +45196,8 @@ from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:37, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/format/blastxml_format.cpp:45: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/blast/format/blast_format.hpp:49, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/format/blast_format.cpp:37: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -45184,7 +45215,8 @@ | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/format/blastxml_format.cpp:45: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/blast/format/blast_format.hpp:49, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/format/blast_format.cpp:37: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^ @@ -45192,7 +45224,8 @@ from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:37, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/format/blastxml_format.cpp:45: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/blast/format/blast_format.hpp:49, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/format/blast_format.cpp:37: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -45212,7 +45245,7 @@ from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:37, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/format/blastxml2_format.cpp:46: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/format/blastxml_format.cpp:45: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -45306,7 +45339,7 @@ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:37, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/format/blastxml2_format.cpp:46: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/format/blastxml_format.cpp:45: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^ @@ -45314,7 +45347,7 @@ from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:37, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/format/blastxml2_format.cpp:46: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/format/blastxml_format.cpp:45: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -45332,7 +45365,7 @@ | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/format/blastxml2_format.cpp:46: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/format/blastxml_format.cpp:45: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^ @@ -45340,7 +45373,7 @@ from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:37, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/format/blastxml2_format.cpp:46: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/format/blastxml_format.cpp:45: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -45356,80 +45389,11 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/segmasker/segmasker.cpp:44: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] - 94 | objects::CFastaReader::fAllSeqIds | - | ^~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/segmasker/segmasker.cpp:44: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here - 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) - | ^~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/segmasker/segmasker.cpp:44: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] - 94 | objects::CFastaReader::fAllSeqIds | - | ^~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/segmasker/segmasker.cpp:44: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here - 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) - | ^~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -DNCBI_APP_BUILT_AS=convert2blastmask /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blastdb/convert2blastmask.cpp -o convert2blastmask.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie convert2blastmask.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lmbedtls -lmbedx509 -lmbedcrypto -lz -llmdb -lpthread -ldl -lm -lpthread -o convert2blastmask -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f convert2blastmask /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin -/bin/ln -f convert2blastmask /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/convert2blastmask -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/format/blastxml_format.cpp: In function 'void ncbi::s_SeqAlignSetToXMLHits(std::__cxx11::list >&, const ncbi::objects::CSeq_align_set&, ncbi::objects::CScope*, const ncbi::CBlastFormattingMatrix*, const ncbi::TMaskedQueryRegions*, bool, int, int, ncbi::CNcbiOstream*)': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/format/blastxml_format.cpp:501:86: warning: 'ncbi::CObjectOStreamXml::CObjectOStreamXml(ncbi::CNcbiOstream&, bool)' is deprecated [-Wdeprecated-declarations] - 501 | auto_ptr xml_one_hit_os (new CObjectOStreamXml (one_hit_os,false)); - | ^ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objmgr/object_manager.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/format/blastxml_format.cpp:34: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/serial/objostrxml.hpp:66:26: note: declared here - 66 | NCBI_DEPRECATED_CTOR(CObjectOStreamXml(CNcbiOstream& out, bool deleteOut)); - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:1143:38: note: in definition of macro 'NCBI_DEPRECATED_CTOR' - 1143 | # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED - | ^~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/format/blastxml_format.cpp: In function 'bool ncbi::s_SerializeAndSplitBy(const ncbi::CSerialObject&, const char*, std::string&, std::string&, bool, bool)': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/format/blastxml_format.cpp:785:89: warning: 'ncbi::CObjectOStreamXml::CObjectOStreamXml(ncbi::CNcbiOstream&, bool)' is deprecated [-Wdeprecated-declarations] - 785 | auto_ptr xml_one_iter_os(new CObjectOStreamXml (one_iter_ss_os,false)); - | ^ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objmgr/object_manager.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/format/blastxml_format.cpp:34: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/serial/objostrxml.hpp:66:26: note: declared here - 66 | NCBI_DEPRECATED_CTOR(CObjectOStreamXml(CNcbiOstream& out, bool deleteOut)); - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:1143:38: note: in definition of macro 'NCBI_DEPRECATED_CTOR' - 1143 | # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED - | ^~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/segmasker' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -DNCBI_APP_BUILT_AS=segmasker /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/segmasker/segmasker.cpp -o segmasker.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie segmasker.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lxobjsimple -lxalgosegmask -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -ldl -ldl -lm -lpthread -o segmasker -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f segmasker /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin -/bin/ln -f segmasker /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/segmasker -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/segmasker' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/segmasker' In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:37, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/blast/format/blast_format.hpp:49, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/format/blast_format.cpp:37: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/format/blastxml2_format.cpp:46: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -45523,8 +45487,7 @@ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:37, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/blast/format/blast_format.hpp:49, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/format/blast_format.cpp:37: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/format/blastxml2_format.cpp:46: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^ @@ -45532,8 +45495,7 @@ from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:37, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/blast/format/blast_format.hpp:49, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/format/blast_format.cpp:37: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/format/blastxml2_format.cpp:46: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -45551,8 +45513,7 @@ | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/blast/format/blast_format.hpp:49, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/format/blast_format.cpp:37: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/format/blastxml2_format.cpp:46: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^ @@ -45560,8 +45521,7 @@ from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:37, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/blast/format/blast_format.hpp:49, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/format/blast_format.cpp:37: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/format/blastxml2_format.cpp:46: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -45577,30 +45537,81 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/format/data4xmlformat.cpp:37: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/blast/format/data4xmlformat.hpp: In member function 'virtual std::string ncbi::CCmdLineBlastXMLReportData::GetFilterString() const': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/blast/format/data4xmlformat.hpp:155:39: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations] - 155 | m_Options.GetFilterString(); /* NCBI_FAKE_WARNING */ - | ^ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/blast/api/blast_options_handle.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/blast/api/uniform_search.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/blast/format/data4xmlformat.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/format/data4xmlformat.cpp:37: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/blast/api/blast_options.hpp:178:27: note: declared here - 178 | NCBI_DEPRECATED char* GetFilterString() const; - | ^~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/format/data4xml2format.cpp:36: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/blast/format/data4xml2format.hpp: In member function 'virtual std::string ncbi::CCmdLineBlastXML2ReportData::GetFilterString() const': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/blast/format/data4xml2format.hpp:140:40: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations] - 140 | m_Options->GetFilterString(); /* NCBI_FAKE_WARNING */ - | ^ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/blast/api/blast_options_handle.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/blast/api/uniform_search.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/blast/format/data4xml2format.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/format/data4xml2format.cpp:36: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/blast/api/blast_options.hpp:178:27: note: declared here - 178 | NCBI_DEPRECATED char* GetFilterString() const; - | ^~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/segmasker/segmasker.cpp:44: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] + 94 | objects::CFastaReader::fAllSeqIds | + | ^~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/segmasker/segmasker.cpp:44: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here + 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) + | ^~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/segmasker/segmasker.cpp:44: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] + 94 | objects::CFastaReader::fAllSeqIds | + | ^~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/segmasker/segmasker.cpp:44: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here + 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) + | ^~~~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=uniform_search_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/uniform_search_unit_test.cpp -o uniform_search_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie uniform_search_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -ldl -ldl -lm -lpthread -o uniform_search_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f uniform_search_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin +/bin/ln -f uniform_search_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/uniform_search_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -DNCBI_APP_BUILT_AS=convert2blastmask /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blastdb/convert2blastmask.cpp -o convert2blastmask.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie convert2blastmask.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lmbedtls -lmbedx509 -lmbedcrypto -lz -llmdb -lpthread -ldl -lm -lpthread -o convert2blastmask +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f convert2blastmask /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin +/bin/ln -f convert2blastmask /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/convert2blastmask +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/format/blastxml_format.cpp: In function 'void ncbi::s_SeqAlignSetToXMLHits(std::__cxx11::list >&, const ncbi::objects::CSeq_align_set&, ncbi::objects::CScope*, const ncbi::CBlastFormattingMatrix*, const ncbi::TMaskedQueryRegions*, bool, int, int, ncbi::CNcbiOstream*)': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/format/blastxml_format.cpp:501:86: warning: 'ncbi::CObjectOStreamXml::CObjectOStreamXml(ncbi::CNcbiOstream&, bool)' is deprecated [-Wdeprecated-declarations] + 501 | auto_ptr xml_one_hit_os (new CObjectOStreamXml (one_hit_os,false)); + | ^ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objmgr/object_manager.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/format/blastxml_format.cpp:34: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/serial/objostrxml.hpp:66:26: note: declared here + 66 | NCBI_DEPRECATED_CTOR(CObjectOStreamXml(CNcbiOstream& out, bool deleteOut)); + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:1143:38: note: in definition of macro 'NCBI_DEPRECATED_CTOR' + 1143 | # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED + | ^~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/segmasker' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -DNCBI_APP_BUILT_AS=segmasker /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/segmasker/segmasker.cpp -o segmasker.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie segmasker.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lxobjsimple -lxalgosegmask -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -ldl -ldl -lm -lpthread -o segmasker +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f segmasker /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin +/bin/ln -f segmasker /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/segmasker +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/segmasker' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/segmasker' +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/format/blastxml_format.cpp: In function 'bool ncbi::s_SerializeAndSplitBy(const ncbi::CSerialObject&, const char*, std::string&, std::string&, bool, bool)': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/format/blastxml_format.cpp:785:89: warning: 'ncbi::CObjectOStreamXml::CObjectOStreamXml(ncbi::CNcbiOstream&, bool)' is deprecated [-Wdeprecated-declarations] + 785 | auto_ptr xml_one_iter_os(new CObjectOStreamXml (one_iter_ss_os,false)); + | ^ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objmgr/object_manager.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/format/blastxml_format.cpp:34: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/serial/objostrxml.hpp:66:26: note: declared here + 66 | NCBI_DEPRECATED_CTOR(CObjectOStreamXml(CNcbiOstream& out, bool deleteOut)); + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:1143:38: note: in definition of macro 'NCBI_DEPRECATED_CTOR' + 1143 | # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED + | ^~~~ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/format/blast_format.cpp:49: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/blast/format/data4xmlformat.hpp: In member function 'virtual std::string ncbi::CCmdLineBlastXMLReportData::GetFilterString() const': /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/blast/format/data4xmlformat.hpp:155:39: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations] @@ -45647,6 +45658,43 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/misc/jsonwrapp/rapidjson11/document.h:88:8: note: 'struct rapidjson::GenericMember, rapidjson::MemoryPoolAllocator<> >' declared here 88 | struct GenericMember { | ^~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/misc/jsonwrapp/jsonwrapp11.hpp:75, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/misc/jsonwrapp/jsonwrapp.hpp:29, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/format/blast_format.cpp:53: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/misc/jsonwrapp/rapidjson11/document.h: In instantiation of 'void rapidjson::GenericValue::SetObjectRaw(rapidjson::GenericValue::Member*, rapidjson::SizeType, Allocator&) [with Encoding = rapidjson::UTF8<>; Allocator = rapidjson::MemoryPoolAllocator<>; rapidjson::GenericValue::Member = rapidjson::GenericMember, rapidjson::MemoryPoolAllocator<> >; rapidjson::SizeType = unsigned int]': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/misc/jsonwrapp/rapidjson11/document.h:2501:55: required from 'bool rapidjson::GenericDocument::EndObject(rapidjson::SizeType) [with Encoding = rapidjson::UTF8<>; Allocator = rapidjson::MemoryPoolAllocator<>; StackAllocator = rapidjson::CrtAllocator; rapidjson::SizeType = unsigned int]' +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/misc/jsonwrapp/rapidjson11/reader.h:1721:40: required from 'rapidjson::GenericReader::IterativeParsingState rapidjson::GenericReader::Transit(rapidjson::GenericReader::IterativeParsingState, rapidjson::GenericReader::Token, rapidjson::GenericReader::IterativeParsingState, InputStream&, Handler&) [with unsigned int parseFlags = 8; InputStream = rapidjson::GenericStringStream >; Handler = rapidjson::GenericDocument >; SourceEncoding = rapidjson::UTF8<>; TargetEncoding = rapidjson::UTF8<>; StackAllocator = rapidjson::CrtAllocator]' +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/misc/jsonwrapp/rapidjson11/reader.h:1817:58: required from 'rapidjson::ParseResult rapidjson::GenericReader::IterativeParse(InputStream&, Handler&) [with unsigned int parseFlags = 8; InputStream = rapidjson::GenericStringStream >; Handler = rapidjson::GenericDocument >; SourceEncoding = rapidjson::UTF8<>; TargetEncoding = rapidjson::UTF8<>; StackAllocator = rapidjson::CrtAllocator]' +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/misc/jsonwrapp/rapidjson11/reader.h:473:46: required from 'rapidjson::ParseResult rapidjson::GenericReader::Parse(InputStream&, Handler&) [with unsigned int parseFlags = 8; InputStream = rapidjson::GenericStringStream >; Handler = rapidjson::GenericDocument >; SourceEncoding = rapidjson::UTF8<>; TargetEncoding = rapidjson::UTF8<>; StackAllocator = rapidjson::CrtAllocator]' +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/misc/jsonwrapp/rapidjson11/document.h:2284:57: required from 'rapidjson::GenericDocument& rapidjson::GenericDocument::ParseStream(InputStream&) [with unsigned int parseFlags = 8; SourceEncoding = rapidjson::UTF8<>; InputStream = rapidjson::GenericStringStream >; Encoding = rapidjson::UTF8<>; Allocator = rapidjson::MemoryPoolAllocator<>; StackAllocator = rapidjson::CrtAllocator]' +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/misc/jsonwrapp/rapidjson11/document.h:2351:55: required from 'rapidjson::GenericDocument& rapidjson::GenericDocument::Parse(const typename SourceEncoding::Ch*) [with unsigned int parseFlags = 8; SourceEncoding = rapidjson::UTF8<>; Encoding = rapidjson::UTF8<>; Allocator = rapidjson::MemoryPoolAllocator<>; StackAllocator = rapidjson::CrtAllocator; typename SourceEncoding::Ch = char]' +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/misc/jsonwrapp/jsonwrapp11.hpp:2285:85: required from here +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/misc/jsonwrapp/rapidjson11/document.h:2024:24: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of type 'rapidjson::GenericValue >::Member' {aka 'struct rapidjson::GenericMember, rapidjson::MemoryPoolAllocator<> >'} with no trivial copy-assignment; use copy-assignment instead [-Wclass-memaccess] + 2024 | std::memcpy(m, members, count * sizeof(Member)); + | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/misc/jsonwrapp/jsonwrapp11.hpp:75, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/misc/jsonwrapp/jsonwrapp.hpp:29, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/format/blast_format.cpp:53: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/misc/jsonwrapp/rapidjson11/document.h:88:8: note: 'rapidjson::GenericValue >::Member' {aka 'struct rapidjson::GenericMember, rapidjson::MemoryPoolAllocator<> >'} declared here + 88 | struct GenericMember { + | ^~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/misc/jsonwrapp/jsonwrapp11.hpp:75, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/misc/jsonwrapp/jsonwrapp.hpp:29, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/format/blast_format.cpp:53: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/misc/jsonwrapp/rapidjson11/document.h: In instantiation of 'void rapidjson::GenericValue::SetArrayRaw(rapidjson::GenericValue*, rapidjson::SizeType, Allocator&) [with Encoding = rapidjson::UTF8<>; Allocator = rapidjson::MemoryPoolAllocator<>; rapidjson::SizeType = unsigned int]': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/misc/jsonwrapp/rapidjson11/document.h:2509:54: required from 'bool rapidjson::GenericDocument::EndArray(rapidjson::SizeType) [with Encoding = rapidjson::UTF8<>; Allocator = rapidjson::MemoryPoolAllocator<>; StackAllocator = rapidjson::CrtAllocator; rapidjson::SizeType = unsigned int]' +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/misc/jsonwrapp/rapidjson11/reader.h:1751:39: required from 'rapidjson::GenericReader::IterativeParsingState rapidjson::GenericReader::Transit(rapidjson::GenericReader::IterativeParsingState, rapidjson::GenericReader::Token, rapidjson::GenericReader::IterativeParsingState, InputStream&, Handler&) [with unsigned int parseFlags = 8; InputStream = rapidjson::GenericStringStream >; Handler = rapidjson::GenericDocument >; SourceEncoding = rapidjson::UTF8<>; TargetEncoding = rapidjson::UTF8<>; StackAllocator = rapidjson::CrtAllocator]' +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/misc/jsonwrapp/rapidjson11/reader.h:1817:58: required from 'rapidjson::ParseResult rapidjson::GenericReader::IterativeParse(InputStream&, Handler&) [with unsigned int parseFlags = 8; InputStream = rapidjson::GenericStringStream >; Handler = rapidjson::GenericDocument >; SourceEncoding = rapidjson::UTF8<>; TargetEncoding = rapidjson::UTF8<>; StackAllocator = rapidjson::CrtAllocator]' +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/misc/jsonwrapp/rapidjson11/reader.h:473:46: required from 'rapidjson::ParseResult rapidjson::GenericReader::Parse(InputStream&, Handler&) [with unsigned int parseFlags = 8; InputStream = rapidjson::GenericStringStream >; Handler = rapidjson::GenericDocument >; SourceEncoding = rapidjson::UTF8<>; TargetEncoding = rapidjson::UTF8<>; StackAllocator = rapidjson::CrtAllocator]' +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/misc/jsonwrapp/rapidjson11/document.h:2284:57: required from 'rapidjson::GenericDocument& rapidjson::GenericDocument::ParseStream(InputStream&) [with unsigned int parseFlags = 8; SourceEncoding = rapidjson::UTF8<>; InputStream = rapidjson::GenericStringStream >; Encoding = rapidjson::UTF8<>; Allocator = rapidjson::MemoryPoolAllocator<>; StackAllocator = rapidjson::CrtAllocator]' +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/misc/jsonwrapp/rapidjson11/document.h:2351:55: required from 'rapidjson::GenericDocument& rapidjson::GenericDocument::Parse(const typename SourceEncoding::Ch*) [with unsigned int parseFlags = 8; SourceEncoding = rapidjson::UTF8<>; Encoding = rapidjson::UTF8<>; Allocator = rapidjson::MemoryPoolAllocator<>; StackAllocator = rapidjson::CrtAllocator; typename SourceEncoding::Ch = char]' +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/misc/jsonwrapp/jsonwrapp11.hpp:2285:85: required from here +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/misc/jsonwrapp/rapidjson11/document.h:2009:24: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of type 'class rapidjson::GenericValue >' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] + 2009 | std::memcpy(e, values, count * sizeof(GenericValue)); + | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/misc/jsonwrapp/rapidjson11/document.h:564:7: note: 'class rapidjson::GenericValue >' declared here + 564 | class GenericValue { + | ^~~~~~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/format' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/format/blastfmtutil.cpp -o blastfmtutil.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/format/blastxml_format.cpp -o blastxml_format.o @@ -45654,7 +45702,31 @@ /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/format/blast_format.cpp -o blast_format.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/format/data4xmlformat.cpp -o data4xmlformat.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/format/data4xml2format.cpp -o data4xml2format.o -/usr/bin/g++ -std=In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, +/usr/bin/g++ -std=In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/format/data4xmlformat.cpp:37: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/blast/format/data4xmlformat.hpp: In member function 'virtual std::string ncbi::CCmdLineBlastXMLReportData::GetFilterString() const': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/blast/format/data4xmlformat.hpp:155:39: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations] + 155 | m_Options.GetFilterString(); /* NCBI_FAKE_WARNING */ + | ^ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/blast/api/blast_options_handle.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/blast/api/uniform_search.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/blast/format/data4xmlformat.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/format/data4xmlformat.cpp:37: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/blast/api/blast_options.hpp:178:27: note: declared here + 178 | NCBI_DEPRECATED char* GetFilterString() const; + | ^~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/format/data4xml2format.cpp:36: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/blast/format/data4xml2format.hpp: In member function 'virtual std::string ncbi::CCmdLineBlastXML2ReportData::GetFilterString() const': +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/blast/format/data4xml2format.hpp:140:40: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations] + 140 | m_Options->GetFilterString(); /* NCBI_FAKE_WARNING */ + | ^ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/blast/api/blast_options_handle.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/blast/api/uniform_search.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/blast/format/data4xml2format.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/format/data4xml2format.cpp:36: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/blast/api/blast_options.hpp:178:27: note: declared here + 178 | NCBI_DEPRECATED char* GetFilterString() const; + | ^~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:37, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, @@ -45807,43 +45879,6 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/misc/jsonwrapp/jsonwrapp11.hpp:75, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/misc/jsonwrapp/jsonwrapp.hpp:29, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/format/blast_format.cpp:53: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/misc/jsonwrapp/rapidjson11/document.h: In instantiation of 'void rapidjson::GenericValue::SetObjectRaw(rapidjson::GenericValue::Member*, rapidjson::SizeType, Allocator&) [with Encoding = rapidjson::UTF8<>; Allocator = rapidjson::MemoryPoolAllocator<>; rapidjson::GenericValue::Member = rapidjson::GenericMember, rapidjson::MemoryPoolAllocator<> >; rapidjson::SizeType = unsigned int]': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/misc/jsonwrapp/rapidjson11/document.h:2501:55: required from 'bool rapidjson::GenericDocument::EndObject(rapidjson::SizeType) [with Encoding = rapidjson::UTF8<>; Allocator = rapidjson::MemoryPoolAllocator<>; StackAllocator = rapidjson::CrtAllocator; rapidjson::SizeType = unsigned int]' -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/misc/jsonwrapp/rapidjson11/reader.h:1721:40: required from 'rapidjson::GenericReader::IterativeParsingState rapidjson::GenericReader::Transit(rapidjson::GenericReader::IterativeParsingState, rapidjson::GenericReader::Token, rapidjson::GenericReader::IterativeParsingState, InputStream&, Handler&) [with unsigned int parseFlags = 8; InputStream = rapidjson::GenericStringStream >; Handler = rapidjson::GenericDocument >; SourceEncoding = rapidjson::UTF8<>; TargetEncoding = rapidjson::UTF8<>; StackAllocator = rapidjson::CrtAllocator]' -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/misc/jsonwrapp/rapidjson11/reader.h:1817:58: required from 'rapidjson::ParseResult rapidjson::GenericReader::IterativeParse(InputStream&, Handler&) [with unsigned int parseFlags = 8; InputStream = rapidjson::GenericStringStream >; Handler = rapidjson::GenericDocument >; SourceEncoding = rapidjson::UTF8<>; TargetEncoding = rapidjson::UTF8<>; StackAllocator = rapidjson::CrtAllocator]' -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/misc/jsonwrapp/rapidjson11/reader.h:473:46: required from 'rapidjson::ParseResult rapidjson::GenericReader::Parse(InputStream&, Handler&) [with unsigned int parseFlags = 8; InputStream = rapidjson::GenericStringStream >; Handler = rapidjson::GenericDocument >; SourceEncoding = rapidjson::UTF8<>; TargetEncoding = rapidjson::UTF8<>; StackAllocator = rapidjson::CrtAllocator]' -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/misc/jsonwrapp/rapidjson11/document.h:2284:57: required from 'rapidjson::GenericDocument& rapidjson::GenericDocument::ParseStream(InputStream&) [with unsigned int parseFlags = 8; SourceEncoding = rapidjson::UTF8<>; InputStream = rapidjson::GenericStringStream >; Encoding = rapidjson::UTF8<>; Allocator = rapidjson::MemoryPoolAllocator<>; StackAllocator = rapidjson::CrtAllocator]' -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/misc/jsonwrapp/rapidjson11/document.h:2351:55: required from 'rapidjson::GenericDocument& rapidjson::GenericDocument::Parse(const typename SourceEncoding::Ch*) [with unsigned int parseFlags = 8; SourceEncoding = rapidjson::UTF8<>; Encoding = rapidjson::UTF8<>; Allocator = rapidjson::MemoryPoolAllocator<>; StackAllocator = rapidjson::CrtAllocator; typename SourceEncoding::Ch = char]' -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/misc/jsonwrapp/jsonwrapp11.hpp:2285:85: required from here -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/misc/jsonwrapp/rapidjson11/document.h:2024:24: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of type 'rapidjson::GenericValue >::Member' {aka 'struct rapidjson::GenericMember, rapidjson::MemoryPoolAllocator<> >'} with no trivial copy-assignment; use copy-assignment instead [-Wclass-memaccess] - 2024 | std::memcpy(m, members, count * sizeof(Member)); - | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/misc/jsonwrapp/jsonwrapp11.hpp:75, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/misc/jsonwrapp/jsonwrapp.hpp:29, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/format/blast_format.cpp:53: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/misc/jsonwrapp/rapidjson11/document.h:88:8: note: 'rapidjson::GenericValue >::Member' {aka 'struct rapidjson::GenericMember, rapidjson::MemoryPoolAllocator<> >'} declared here - 88 | struct GenericMember { - | ^~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/misc/jsonwrapp/jsonwrapp11.hpp:75, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/misc/jsonwrapp/jsonwrapp.hpp:29, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/format/blast_format.cpp:53: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/misc/jsonwrapp/rapidjson11/document.h: In instantiation of 'void rapidjson::GenericValue::SetArrayRaw(rapidjson::GenericValue*, rapidjson::SizeType, Allocator&) [with Encoding = rapidjson::UTF8<>; Allocator = rapidjson::MemoryPoolAllocator<>; rapidjson::SizeType = unsigned int]': -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/misc/jsonwrapp/rapidjson11/document.h:2509:54: required from 'bool rapidjson::GenericDocument::EndArray(rapidjson::SizeType) [with Encoding = rapidjson::UTF8<>; Allocator = rapidjson::MemoryPoolAllocator<>; StackAllocator = rapidjson::CrtAllocator; rapidjson::SizeType = unsigned int]' -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/misc/jsonwrapp/rapidjson11/reader.h:1751:39: required from 'rapidjson::GenericReader::IterativeParsingState rapidjson::GenericReader::Transit(rapidjson::GenericReader::IterativeParsingState, rapidjson::GenericReader::Token, rapidjson::GenericReader::IterativeParsingState, InputStream&, Handler&) [with unsigned int parseFlags = 8; InputStream = rapidjson::GenericStringStream >; Handler = rapidjson::GenericDocument >; SourceEncoding = rapidjson::UTF8<>; TargetEncoding = rapidjson::UTF8<>; StackAllocator = rapidjson::CrtAllocator]' -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/misc/jsonwrapp/rapidjson11/reader.h:1817:58: required from 'rapidjson::ParseResult rapidjson::GenericReader::IterativeParse(InputStream&, Handler&) [with unsigned int parseFlags = 8; InputStream = rapidjson::GenericStringStream >; Handler = rapidjson::GenericDocument >; SourceEncoding = rapidjson::UTF8<>; TargetEncoding = rapidjson::UTF8<>; StackAllocator = rapidjson::CrtAllocator]' -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/misc/jsonwrapp/rapidjson11/reader.h:473:46: required from 'rapidjson::ParseResult rapidjson::GenericReader::Parse(InputStream&, Handler&) [with unsigned int parseFlags = 8; InputStream = rapidjson::GenericStringStream >; Handler = rapidjson::GenericDocument >; SourceEncoding = rapidjson::UTF8<>; TargetEncoding = rapidjson::UTF8<>; StackAllocator = rapidjson::CrtAllocator]' -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/misc/jsonwrapp/rapidjson11/document.h:2284:57: required from 'rapidjson::GenericDocument& rapidjson::GenericDocument::ParseStream(InputStream&) [with unsigned int parseFlags = 8; SourceEncoding = rapidjson::UTF8<>; InputStream = rapidjson::GenericStringStream >; Encoding = rapidjson::UTF8<>; Allocator = rapidjson::MemoryPoolAllocator<>; StackAllocator = rapidjson::CrtAllocator]' -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/misc/jsonwrapp/rapidjson11/document.h:2351:55: required from 'rapidjson::GenericDocument& rapidjson::GenericDocument::Parse(const typename SourceEncoding::Ch*) [with unsigned int parseFlags = 8; SourceEncoding = rapidjson::UTF8<>; Encoding = rapidjson::UTF8<>; Allocator = rapidjson::MemoryPoolAllocator<>; StackAllocator = rapidjson::CrtAllocator; typename SourceEncoding::Ch = char]' -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/misc/jsonwrapp/jsonwrapp11.hpp:2285:85: required from here -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/misc/jsonwrapp/rapidjson11/document.h:2009:24: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of type 'class rapidjson::GenericValue >' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] - 2009 | std::memcpy(e, values, count * sizeof(GenericValue)); - | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/misc/jsonwrapp/rapidjson11/document.h:564:7: note: 'class rapidjson::GenericValue >' declared here - 564 | class GenericValue { - | ^~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:37, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, @@ -46017,39 +46052,50 @@ /bin/ln -f .xblastformat.dep /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/.xblastformat.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/format' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/format' -cd algo/blast/blastinput/unit_test/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=blastinput_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=bl2seq_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=blast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/blastinput/unit_test/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=blastinput_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=bl2seq_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/blastinput/unit_test' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=blast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=delta_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/blastinput/unit_test' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/blastinput/unit_test' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/blastinput/unit_test' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/blastinput/unit_test' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/blastinput/unit_test' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/blastinput/unit_test' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/blastinput/unit_test TMPL=blastinput_unit_test -w -j3 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=bl2seq_unit_test -w -j3 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=blast_unit_test -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/blastinput/unit_test TMPL=blastinput_unit_test -w -j4 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=bl2seq_unit_test -w -j4 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=delta_unit_test -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=blast_unit_test -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp:35: @@ -46168,6 +46214,122 @@ | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/delta_unit_test.cpp:34: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/delta_unit_test.cpp:34: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/delta_unit_test.cpp:34: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:35: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) @@ -46529,7 +46691,7 @@ from /usr/include/boost/test/test_tools.hpp:46, from /usr/include/boost/test/unit_test.hpp:18, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/blast_unit_test.cpp:39: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/delta_unit_test.cpp:34: /usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' 14 | BOOST_HEADER_DEPRECATED( "" ) | ^~~~~~~~~~~~~~~~~~~~~~~ @@ -46549,6 +46711,22 @@ /usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' 14 | BOOST_HEADER_DEPRECATED( "" ) | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, + from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, + from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, + from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, + from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, + from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, + from /usr/include/boost/shared_ptr.hpp:17, + from /usr/include/boost/test/tools/assertion_result.hpp:21, + from /usr/include/boost/test/tools/old/impl.hpp:20, + from /usr/include/boost/test/test_tools.hpp:46, + from /usr/include/boost/test/unit_test.hpp:18, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/blast_unit_test.cpp:39: +/usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' + 14 | BOOST_HEADER_DEPRECATED( "" ) + | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/test/auto_unit_test.hpp:17:1: note: '#pragma message: This header is deprecated. Use instead.' 17 | BOOST_HEADER_DEPRECATED( "" ) | ^~~~~~~~~~~~~~~~~~~~~~~ @@ -46575,20 +46753,20 @@ /bin/ln -f blast_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/blast_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=delta_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=magicblast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=delta_unit_test -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=magicblast_unit_test -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/delta_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/magicblast_unit_test.cpp:32: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -46680,13 +46858,13 @@ 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/delta_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/magicblast_unit_test.cpp:32: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/delta_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/magicblast_unit_test.cpp:32: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -46731,7 +46909,7 @@ from /usr/include/boost/test/test_tools.hpp:46, from /usr/include/boost/test/unit_test.hpp:18, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/delta_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/magicblast_unit_test.cpp:32: /usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' 14 | BOOST_HEADER_DEPRECATED( "" ) | ^~~~~~~~~~~~~~~~~~~~~~~ @@ -46742,20 +46920,20 @@ /bin/ln -f delta_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/delta_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=magicblast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=psiblast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=magicblast_unit_test -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=psiblast_unit_test -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/magicblast_unit_test.cpp:32: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/psiblast_unit_test.cpp:35: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -46847,13 +47025,13 @@ 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/magicblast_unit_test.cpp:32: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/psiblast_unit_test.cpp:35: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/magicblast_unit_test.cpp:32: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/psiblast_unit_test.cpp:35: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -46881,7 +47059,7 @@ from /usr/include/boost/test/test_tools.hpp:46, from /usr/include/boost/test/unit_test.hpp:18, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/magicblast_unit_test.cpp:32: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/psiblast_unit_test.cpp:35: /usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' 14 | BOOST_HEADER_DEPRECATED( "" ) | ^~~~~~~~~~~~~~~~~~~~~~~ @@ -46892,20 +47070,20 @@ /bin/ln -f magicblast_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/magicblast_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=psiblast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=redoalignment_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=psiblast_unit_test -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=redoalignment_unit_test -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/psiblast_unit_test.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp:34: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -46997,13 +47175,13 @@ 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/psiblast_unit_test.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp:34: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/psiblast_unit_test.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp:34: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -47031,49 +47209,31 @@ from /usr/include/boost/test/test_tools.hpp:46, from /usr/include/boost/test/unit_test.hpp:18, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/psiblast_unit_test.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp:34: /usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' 14 | BOOST_HEADER_DEPRECATED( "" ) | ^~~~~~~~~~~~~~~~~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=bl2seq_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp -o bl2seq_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie bl2seq_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -ldl -ldl -lm -lpthread -o bl2seq_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f bl2seq_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin -/bin/ln -f bl2seq_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/bl2seq_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=redoalignment_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api TMPL=redoalignment_unit_test -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=psiblast_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/psiblast_unit_test.cpp -o psiblast_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie psiblast_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lseqalign_util -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -ldl -ldl -lm -lpthread -o psiblast_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f psiblast_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin -/bin/ln -f psiblast_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/psiblast_unit_test +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/../../api -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/../../core -DNCBI_APP_BUILT_AS=redoalignment_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp -o redoalignment_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie redoalignment_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -ldl -ldl -lm -lpthread -o redoalignment_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f redoalignment_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin +/bin/ln -f redoalignment_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/redoalignment_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/blast_format/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=blast_format_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/blast_format/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=blast_format_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/blast_format' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/blast_format' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/blast_format' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/blast_format' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/blast_format' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/blast_format TMPL=blast_format_unit_test -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/blast_format TMPL=blast_format_unit_test -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/blast_format/seqalignfilter_unit_test.cpp:53: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -47165,13 +47325,13 @@ 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/blast_format/seqalignfilter_unit_test.cpp:53: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/blast_format/seqalignfilter_unit_test.cpp:53: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -47189,16 +47349,16 @@ | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/blast_format/seqalignfilter_unit_test.cpp:53: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/blast_format/vecscreen_run_unit_test.cpp:51: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -47214,9 +47374,9 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -47232,9 +47392,9 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -47250,9 +47410,9 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -47268,9 +47428,9 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -47281,19 +47441,19 @@ 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/blast_format/seqalignfilter_unit_test.cpp:53: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/blast_format/vecscreen_run_unit_test.cpp:51: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/blast_format/seqalignfilter_unit_test.cpp:53: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/blast_format/vecscreen_run_unit_test.cpp:51: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -47305,7 +47465,7 @@ | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp:51: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp:55: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -47397,13 +47557,13 @@ 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp:51: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp:55: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp:51: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp:55: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -47421,7 +47581,7 @@ | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp:55: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp:51: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -47513,13 +47673,13 @@ 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp:55: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp:51: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp:55: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp:51: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -47535,85 +47695,27 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, - from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, - from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, - from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, - from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, - from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, - from /usr/include/boost/shared_ptr.hpp:17, - from /usr/include/boost/test/tools/assertion_result.hpp:21, - from /usr/include/boost/test/tools/old/impl.hpp:20, - from /usr/include/boost/test/test_tools.hpp:46, - from /usr/include/boost/test/unit_test.hpp:18, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp:34: -/usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' - 14 | BOOST_HEADER_DEPRECATED( "" ) - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, - from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, - from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, - from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, - from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, - from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, - from /usr/include/boost/shared_ptr.hpp:17, - from /usr/include/boost/test/tools/assertion_result.hpp:21, - from /usr/include/boost/test/tools/old/impl.hpp:20, - from /usr/include/boost/test/test_tools.hpp:46, - from /usr/include/boost/test/unit_test.hpp:18, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/blast_format/seqalignfilter_unit_test.cpp:53: -/usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' - 14 | BOOST_HEADER_DEPRECATED( "" ) - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, - from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, - from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, - from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, - from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, - from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, - from /usr/include/boost/shared_ptr.hpp:17, - from /usr/include/boost/test/tools/assertion_result.hpp:21, - from /usr/include/boost/test/tools/old/impl.hpp:20, - from /usr/include/boost/test/test_tools.hpp:46, - from /usr/include/boost/test/unit_test.hpp:18, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp:55: -/usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' - 14 | BOOST_HEADER_DEPRECATED( "" ) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/boost/test/auto_unit_test.hpp:17:1: note: '#pragma message: This header is deprecated. Use instead.' - 17 | BOOST_HEADER_DEPRECATED( "" ) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' - 14 | BOOST_HEADER_DEPRECATED( "" ) - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, - from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, - from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, - from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, - from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, - from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, - from /usr/include/boost/shared_ptr.hpp:17, - from /usr/include/boost/test/tools/assertion_result.hpp:21, - from /usr/include/boost/test/tools/old/impl.hpp:20, - from /usr/include/boost/test/test_tools.hpp:46, - from /usr/include/boost/test/unit_test.hpp:18, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp:51: -/usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' - 14 | BOOST_HEADER_DEPRECATED( "" ) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/boost/test/auto_unit_test.hpp:17:1: note: '#pragma message: This header is deprecated. Use instead.' - 17 | BOOST_HEADER_DEPRECATED( "" ) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' - 14 | BOOST_HEADER_DEPRECATED( "" ) - | ^~~~~~~~~~~~~~~~~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=psiblast_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/psiblast_unit_test.cpp -o psiblast_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie psiblast_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lseqalign_util -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -ldl -ldl -lm -lpthread -o psiblast_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f psiblast_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin +/bin/ln -f psiblast_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/psiblast_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +cd algo/blast/unit_tests/blastdb/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=bdbloader_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/blastdb' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/blastdb' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/blastdb' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/blastdb' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/blastdb' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/blastdb TMPL=bdbloader_unit_test -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/blast_format/vecscreen_run_unit_test.cpp:51: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/blastdb/bdbloader_unit_test.cpp:47: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -47705,13 +47807,13 @@ 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/blast_format/vecscreen_run_unit_test.cpp:51: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/blastdb/bdbloader_unit_test.cpp:47: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/blast_format/vecscreen_run_unit_test.cpp:51: + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/blastdb/bdbloader_unit_test.cpp:47: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -47727,6 +47829,104 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, + from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, + from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, + from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, + from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, + from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, + from /usr/include/boost/shared_ptr.hpp:17, + from /usr/include/boost/test/tools/assertion_result.hpp:21, + from /usr/include/boost/test/tools/old/impl.hpp:20, + from /usr/include/boost/test/test_tools.hpp:46, + from /usr/include/boost/test/unit_test.hpp:18, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/blast_format/seqalignfilter_unit_test.cpp:53: +/usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' + 14 | BOOST_HEADER_DEPRECATED( "" ) + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, + from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, + from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, + from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, + from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, + from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, + from /usr/include/boost/shared_ptr.hpp:17, + from /usr/include/boost/test/tools/assertion_result.hpp:21, + from /usr/include/boost/test/tools/old/impl.hpp:20, + from /usr/include/boost/test/test_tools.hpp:46, + from /usr/include/boost/test/unit_test.hpp:18, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp:55: +/usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' + 14 | BOOST_HEADER_DEPRECATED( "" ) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/boost/test/auto_unit_test.hpp:17:1: note: '#pragma message: This header is deprecated. Use instead.' + 17 | BOOST_HEADER_DEPRECATED( "" ) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' + 14 | BOOST_HEADER_DEPRECATED( "" ) + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, + from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, + from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, + from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, + from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, + from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, + from /usr/include/boost/shared_ptr.hpp:17, + from /usr/include/boost/test/tools/assertion_result.hpp:21, + from /usr/include/boost/test/tools/old/impl.hpp:20, + from /usr/include/boost/test/test_tools.hpp:46, + from /usr/include/boost/test/unit_test.hpp:18, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp:51: +/usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' + 14 | BOOST_HEADER_DEPRECATED( "" ) + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, + from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, + from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, + from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, + from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, + from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, + from /usr/include/boost/shared_ptr.hpp:17, + from /usr/include/boost/test/tools/assertion_result.hpp:21, + from /usr/include/boost/test/tools/old/impl.hpp:20, + from /usr/include/boost/test/test_tools.hpp:46, + from /usr/include/boost/test/unit_test.hpp:18, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/blast_format/vecscreen_run_unit_test.cpp:51: +/usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' + 14 | BOOST_HEADER_DEPRECATED( "" ) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/boost/test/auto_unit_test.hpp:17:1: note: '#pragma message: This header is deprecated. Use instead.' + 17 | BOOST_HEADER_DEPRECATED( "" ) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' + 14 | BOOST_HEADER_DEPRECATED( "" ) + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, + from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, + from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, + from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, + from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, + from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, + from /usr/include/boost/shared_ptr.hpp:17, + from /usr/include/boost/test/tools/assertion_result.hpp:21, + from /usr/include/boost/test/tools/old/impl.hpp:20, + from /usr/include/boost/test/test_tools.hpp:46, + from /usr/include/boost/test/unit_test.hpp:18, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/blastdb/bdbloader_unit_test.cpp:47: +/usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' + 14 | BOOST_HEADER_DEPRECATED( "" ) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/boost/test/auto_unit_test.hpp:17:1: note: '#pragma message: This header is deprecated. Use instead.' + 17 | BOOST_HEADER_DEPRECATED( "" ) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' + 14 | BOOST_HEADER_DEPRECATED( "" ) + | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:37, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, @@ -47880,181 +48080,24 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/blastinput/unit_test' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blastinput_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp -o blastinput_unit_test.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blastinput_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp -o blast_scope_src_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie blastinput_unit_test.o blast_scope_src_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -ltest_boost -lentrez2cli -lentrez2 -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -ldl -ldl -lm -lpthread -o blastinput_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastinput_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin -/bin/ln -f blastinput_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/blastinput_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/blastinput/unit_test' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/blastinput/unit_test' -cd algo/blast/unit_tests/blastdb/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=bdbloader_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/blastdb' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/blastdb' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/blastdb' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/blastdb' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -I../ -DNCBI_APP_BUILT_AS=bdbloader_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/blastdb/bdbloader_unit_test.cpp -o bdbloader_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie bdbloader_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -ldl -ldl -lm -lpthread -o bdbloader_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f bdbloader_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin +/bin/ln -f bdbloader_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/bdbloader_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/blastdb' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/blastdb TMPL=bdbloader_unit_test -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/blastdb/bdbloader_unit_test.cpp:47: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/blastdb/bdbloader_unit_test.cpp:47: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/blastdb/bdbloader_unit_test.cpp:47: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, - from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, - from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, - from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, - from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, - from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, - from /usr/include/boost/shared_ptr.hpp:17, - from /usr/include/boost/test/tools/assertion_result.hpp:21, - from /usr/include/boost/test/tools/old/impl.hpp:20, - from /usr/include/boost/test/test_tools.hpp:46, - from /usr/include/boost/test/unit_test.hpp:18, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/blast_format/vecscreen_run_unit_test.cpp:51: -/usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' - 14 | BOOST_HEADER_DEPRECATED( "" ) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/boost/test/auto_unit_test.hpp:17:1: note: '#pragma message: This header is deprecated. Use instead.' - 17 | BOOST_HEADER_DEPRECATED( "" ) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' - 14 | BOOST_HEADER_DEPRECATED( "" ) - | ^~~~~~~~~~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/../../api -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/../../core -DNCBI_APP_BUILT_AS=redoalignment_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp -o redoalignment_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie redoalignment_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -ldl -ldl -lm -lpthread -o redoalignment_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f redoalignment_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin -/bin/ln -f redoalignment_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/redoalignment_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd app/blast/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=blast_formatter LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/blastdb' +cd app/blast/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=blast_formatter LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast TMPL=blast_formatter -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast TMPL=blast_formatter -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast/blast_formatter.cpp:35: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -48204,57 +48247,35 @@ from /usr/include/boost/test/test_tools.hpp:46, from /usr/include/boost/test/unit_test.hpp:18, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/blastdb/bdbloader_unit_test.cpp:47: -/usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' - 14 | BOOST_HEADER_DEPRECATED( "" ) - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, - from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, - from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, - from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, - from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, - from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, - from /usr/include/boost/shared_ptr.hpp:17, - from /usr/include/boost/test/tools/assertion_result.hpp:21, - from /usr/include/boost/test/tools/old/impl.hpp:20, - from /usr/include/boost/test/test_tools.hpp:46, - from /usr/include/boost/test/unit_test.hpp:18, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/test_boost.hpp:68, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/blast_format/blast_format_unit_test.cpp:61: /usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' 14 | BOOST_HEADER_DEPRECATED( "" ) | ^~~~~~~~~~~~~~~~~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=bl2seq_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp -o bl2seq_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie bl2seq_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -ldl -ldl -lm -lpthread -o bl2seq_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f bl2seq_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin +/bin/ln -f bl2seq_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/bl2seq_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +cd app/blast/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=blast_report LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. /usr/include/boost/test/auto_unit_test.hpp:17:1: note: '#pragma message: This header is deprecated. Use instead.' 17 | BOOST_HEADER_DEPRECATED( "" ) | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/test/floating_point_comparison.hpp:14:1: note: '#pragma message: This header is deprecated. Use instead.' 14 | BOOST_HEADER_DEPRECATED( "" ) | ^~~~~~~~~~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/blastdb' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -I../ -DNCBI_APP_BUILT_AS=bdbloader_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/blastdb/bdbloader_unit_test.cpp -o bdbloader_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie bdbloader_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -ldl -ldl -lm -lpthread -o bdbloader_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f bdbloader_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin -/bin/ln -f bdbloader_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/bdbloader_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/blastdb' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/blastdb' -cd app/blast/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=blast_report LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast TMPL=blast_report -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/blast_format' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blast_format_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/blast_format/seqalignfilter_unit_test.cpp -o seqalignfilter_unit_test.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blast_format_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp -o blastfmtutil_unit_test.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blast_format_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp -o build_archive_unit_test.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blast_format_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/blast_format/vecscreen_run_unit_test.cpp -o vecscreen_run_unit_test.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blast_format_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/blast_format/blast_format_unit_test.cpp -o blast_format_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkIn file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast TMPL=blast_report -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast/blast_report.cpp:35: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) @@ -48391,22 +48412,28 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -g/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie seqalignfilter_unit_test.o blastfmtutil_unit_test.o build_archive_unit_test.o vecscreen_run_unit_test.o blast_format_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -ldl -ldl -lm -lpthread -o blast_format_unit_test +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/blast_format' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blast_format_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/blast_format/seqalignfilter_unit_test.cpp -o seqalignfilter_unit_test.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blast_format_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp -o blastfmtutil_unit_test.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blast_format_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp -o build_archive_unit_test.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blast_format_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/blast_format/vecscreen_run_unit_test.cpp -o vecscreen_run_unit_test.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blast_format_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/blast_format/blast_format_unit_test.cpp -o blast_format_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie seqalignfilter_unit_test.o blastfmtutil_unit_test.o build_archive_unit_test.o vecscreen_run_unit_test.o blast_format_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -ldl -ldl -lm -lpthread -o blast_format_unit_test /bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_format_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin /bin/ln -f blast_format_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/blast_format_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/blast_format' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/blast_format' -cd app/blast/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=blastn LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd app/blast/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=blastn LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast TMPL=blastn -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast TMPL=blastn -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast/blastn_app.cpp:35: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -48551,17 +48578,17 @@ /bin/ln -f blast_formatter /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/blast_formatter make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -cd app/blast/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=blastp LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd app/blast/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=blastp LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast TMPL=blastp -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast TMPL=blastp -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast/blastp_app.cpp:35: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -48706,17 +48733,17 @@ /bin/ln -f blast_report /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/blast_report make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -cd app/blast/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=blastx LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd app/blast/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=blastx LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast TMPL=blastx -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast TMPL=blastx -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast/blastx_app.cpp:35: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -48854,24 +48881,25 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -DNCBI_APP_BUILT_AS=blastn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast/blastn_app.cpp -o blastn_app.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie blastn_app.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lblast_app_util -lxformat -lxcleanup -lvalid -lgbseq -lmlacli -lmla -lmedlars -lpubmed -lsubmit -lxregexp -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -ldl -lmbedtls -lmbedx509 -lmbedcrypto -lz -ldl -lm -lpthread -o blastn -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin -/bin/ln -f blastn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/blastn -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -cd app/blast/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=deltablast LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/blastinput/unit_test' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blastinput_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp -o blastinput_unit_test.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blastinput_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp -o blast_scope_src_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie blastinput_unit_test.o blast_scope_src_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -ltest_boost -lentrez2cli -lentrez2 -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -ldl -ldl -lm -lpthread -o blastinput_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastinput_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin +/bin/ln -f blastinput_unit_test /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/blastinput_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/blastinput/unit_test' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/blastinput/unit_test' +cd app/blast/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=deltablast LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast TMPL=deltablast -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast TMPL=deltablast -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast/deltablast_app.cpp:36: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -49010,23 +49038,23 @@ 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -DNCBI_APP_BUILT_AS=blastp /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast/blastp_app.cpp -o blastp_app.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie blastp_app.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -ldl -lmbedtls -lmbedx509 -lmbedcrypto -lz -ldl -lm -lpthread -o blastp -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastp /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin -/bin/ln -f blastp /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/blastp +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -DNCBI_APP_BUILT_AS=blastn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast/blastn_app.cpp -o blastn_app.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie blastn_app.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lblast_app_util -lxformat -lxcleanup -lvalid -lgbseq -lmlacli -lmla -lmedlars -lpubmed -lsubmit -lxregexp -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -ldl -lmbedtls -lmbedx509 -lmbedcrypto -lz -ldl -lm -lpthread -o blastn +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin +/bin/ln -f blastn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/blastn make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -cd app/blast/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=psiblast LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd app/blast/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=psiblast LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast TMPL=psiblast -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast TMPL=psiblast -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast/psiblast_app.cpp:35: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -49165,23 +49193,41 @@ 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -DNCBI_APP_BUILT_AS=blastp /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast/blastp_app.cpp -o blastp_app.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie blastp_app.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -ldl -lmbedtls -lmbedx509 -lmbedcrypto -lz -ldl -lm -lpthread -o blastp +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastp /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin +/bin/ln -f blastp /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/blastp +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' +cd app/blast/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=rpsblast LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast TMPL=rpsblast -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -DNCBI_APP_BUILT_AS=blastx /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast/blastx_app.cpp -o blastx_app.o /usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie blastx_app.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -ldl -lmbedtls -lmbedx509 -lmbedcrypto -lz -ldl -lm -lpthread -o blastx /bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastx /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin /bin/ln -f blastx /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/blastx make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -cd app/blast/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=rpsblast LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd app/blast/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=rpstblastn LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast TMPL=rpsblast -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast TMPL=rpstblastn -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast/rpsblast_node.cpp:35: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -49408,72 +49454,6 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/blast/format/blast_format.hpp:49, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast/rpsblast_node.cpp:41: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/blast/format/blast_format.hpp:49, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast/rpsblast_app.cpp:41: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast/rpsblast_node.cpp:35: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast/rpsblast_app.cpp:35: -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -DNCBI_APP_BUILT_AS=deltablast /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast/deltablast_app.cpp -o deltablast_app.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie deltablast_app.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -ldl -lmbedtls -lmbedx509 -lmbedcrypto -lz -ldl -lm -lpthread -o deltablast -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f deltablast /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin -/bin/ln -f deltablast /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/deltablast -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -cd app/blast/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=rpstblastn LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast TMPL=rpstblastn -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast/rpstblastn_node.cpp:35: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -49703,6 +49683,54 @@ In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/blast/format/blast_format.hpp:49, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast/rpsblast_app.cpp:41: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast/rpsblast_app.cpp:35: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/blast/format/blast_format.hpp:49, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast/rpsblast_node.cpp:41: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast/rpsblast_node.cpp:35: +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/blast/format/blast_format.hpp:49, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast/rpstblastn_node.cpp:41: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); @@ -49749,23 +49777,23 @@ 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -DNCBI_APP_BUILT_AS=psiblast /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast/psiblast_app.cpp -o psiblast_app.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie psiblast_app.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -ldl -lmbedtls -lmbedx509 -lmbedcrypto -lz -ldl -lm -lpthread -o psiblast -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f psiblast /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin -/bin/ln -f psiblast /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/psiblast +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -DNCBI_APP_BUILT_AS=deltablast /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast/deltablast_app.cpp -o deltablast_app.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie deltablast_app.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -ldl -lmbedtls -lmbedx509 -lmbedcrypto -lz -ldl -lm -lpthread -o deltablast +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f deltablast /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin +/bin/ln -f deltablast /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/deltablast make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -cd app/blast/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=seedtop LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd app/blast/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=seedtop LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast TMPL=seedtop -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast TMPL=seedtop -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast/seedtop_app.cpp:35: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -49904,24 +49932,23 @@ 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -DNCBI_APP_BUILT_AS=rpsblast /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast/rpsblast_node.cpp -o rpsblast_node.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -DNCBI_APP_BUILT_AS=rpsblast /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast/rpsblast_app.cpp -o rpsblast_app.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie rpsblast_node.o rpsblast_app.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -ldl -lmbedtls -lmbedx509 -lmbedcrypto -lz -ldl -lm -lpthread -o rpsblast -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f rpsblast /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin -/bin/ln -f rpsblast /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/rpsblast +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -DNCBI_APP_BUILT_AS=psiblast /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast/psiblast_app.cpp -o psiblast_app.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie psiblast_app.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -ldl -lmbedtls -lmbedx509 -lmbedcrypto -lz -ldl -lm -lpthread -o psiblast +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f psiblast /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin +/bin/ln -f psiblast /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/psiblast make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -cd app/blast/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=tblastn LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd app/blast/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=tblastn LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast TMPL=tblastn -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast TMPL=tblastn -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast/tblastn_app.cpp:35: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -50060,24 +50087,24 @@ 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -DNCBI_APP_BUILT_AS=rpstblastn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast/rpstblastn_node.cpp -o rpstblastn_node.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -DNCBI_APP_BUILT_AS=rpstblastn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast/rpstblastn_app.cpp -o rpstblastn_app.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie rpstblastn_node.o rpstblastn_app.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -ldl -lmbedtls -lmbedx509 -lmbedcrypto -lz -ldl -lm -lpthread -o rpstblastn -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f rpstblastn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin -/bin/ln -f rpstblastn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/rpstblastn +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -DNCBI_APP_BUILT_AS=rpsblast /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast/rpsblast_node.cpp -o rpsblast_node.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -DNCBI_APP_BUILT_AS=rpsblast /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast/rpsblast_app.cpp -o rpsblast_app.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie rpsblast_node.o rpsblast_app.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -ldl -lmbedtls -lmbedx509 -lmbedcrypto -lz -ldl -lm -lpthread -o rpsblast +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f rpsblast /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin +/bin/ln -f rpsblast /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/rpsblast make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -cd app/blast/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=tblastx LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd app/blast/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=tblastx LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast TMPL=tblastx -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast TMPL=tblastx -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast/tblastx_app.cpp:35: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -50191,6 +50218,15 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -DNCBI_APP_BUILT_AS=rpstblastn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast/rpstblastn_node.cpp -o rpstblastn_node.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -DNCBI_APP_BUILT_AS=rpstblastn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast/rpstblastn_app.cpp -o rpstblastn_app.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie rpstblastn_node.o rpstblastn_app.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -ldl -lmbedtls -lmbedx509 -lmbedcrypto -lz -ldl -lm -lpthread -o rpstblastn +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f rpstblastn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin +/bin/ln -f rpstblastn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/rpstblastn +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' +cd app/blastdb/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=blastdb_aliastool LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgictx.hpp:36, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/algo/blast/format/blast_format.hpp:49, @@ -50215,24 +50251,16 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -DNCBI_APP_BUILT_AS=seedtop /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast/seedtop_app.cpp -o seedtop_app.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie seedtop_app.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -ldl -lmbedtls -lmbedx509 -lmbedcrypto -lz -ldl -lm -lpthread -o seedtop -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f seedtop /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin -/bin/ln -f seedtop /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/seedtop -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -cd app/blastdb/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=blastdb_aliastool LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blastdb TMPL=blastdb_aliastool -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blastdb TMPL=blastdb_aliastool -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blastdb/blastdb_aliastool.cpp:35: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -50347,23 +50375,23 @@ 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -DNCBI_APP_BUILT_AS=tblastn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast/tblastn_app.cpp -o tblastn_app.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie tblastn_app.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -ldl -lmbedtls -lmbedx509 -lmbedcrypto -lz -ldl -lm -lpthread -o tblastn -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f tblastn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin -/bin/ln -f tblastn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/tblastn +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -DNCBI_APP_BUILT_AS=seedtop /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast/seedtop_app.cpp -o seedtop_app.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie seedtop_app.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -ldl -lmbedtls -lmbedx509 -lmbedcrypto -lz -ldl -lm -lpthread -o seedtop +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f seedtop /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin +/bin/ln -f seedtop /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/seedtop make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -cd app/blastdb/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=blastdb_convert LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd app/blastdb/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=blastdb_convert LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blastdb TMPL=blastdb_convert -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blastdb TMPL=blastdb_convert -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blastdb/blastdb_convert.cpp:35: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -50477,24 +50505,60 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/vector:72, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiargs.hpp:84, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blastdb/blastdb_aliastool.cpp:35: +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long int&}; _Tp = long long int; _Alloc = std::allocator]': +/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 426 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/vector:67, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiargs.hpp:84, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blastdb/blastdb_aliastool.cpp:35: +/usr/include/c++/10/bits/stl_vector.h: In member function 'int CBlastDBAliasApp::ConvertGiFile(ncbi::CNcbiIstream&, ncbi::CNcbiOstream&, const string*, const string*) const': +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1198 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -DNCBI_APP_BUILT_AS=tblastx /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast/tblastx_app.cpp -o tblastx_app.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie tblastx_app.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -ldl -lmbedtls -lmbedx509 -lmbedcrypto -lz -ldl -lm -lpthread -o tblastx -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f tblastx /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin -/bin/ln -f tblastx /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/tblastx +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -DNCBI_APP_BUILT_AS=tblastn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast/tblastn_app.cpp -o tblastn_app.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie tblastn_app.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -ldl -lmbedtls -lmbedx509 -lmbedcrypto -lz -ldl -lm -lpthread -o tblastn +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f tblastn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin +/bin/ln -f tblastn /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/tblastn make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -cd app/blastdb/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=blastdb_path LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd app/blastdb/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=blastdb_path LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blastdb TMPL=blastdb_path -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blastdb TMPL=blastdb_path -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blastdb/blastdb_path.cpp:35: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -50608,42 +50672,6 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:72, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiargs.hpp:84, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blastdb/blastdb_aliastool.cpp:35: -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long int&}; _Tp = long long int; _Alloc = std::allocator]': -/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 426 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:67, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidiag.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/tempstr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistr.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiargs.hpp:84, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blastdb/blastdb_aliastool.cpp:35: -/usr/include/c++/10/bits/stl_vector.h: In member function 'int CBlastDBAliasApp::ConvertGiFile(ncbi::CNcbiIstream&, ncbi::CNcbiOstream&, const string*, const string*) const': -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1198 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -DNCBI_APP_BUILT_AS=blastdb_aliastool /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blastdb/blastdb_aliastool.cpp -o blastdb_aliastool.o /usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie blastdb_aliastool.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lwritedb -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -ldl -lmbedtls -lmbedx509 -lmbedcrypto -lz -ldl -lm -lpthread -o blastdb_aliastool @@ -50651,17 +50679,17 @@ /bin/ln -f blastdb_aliastool /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/blastdb_aliastool make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' -cd app/blastdb/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=blastdbcheck LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd app/blastdb/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=blastdbcheck LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blastdb TMPL=blastdbcheck -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blastdb TMPL=blastdbcheck -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blastdb/blastdbcheck.cpp:34: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -50718,6 +50746,12 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -DNCBI_APP_BUILT_AS=tblastx /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blast/tblastx_app.cpp -o tblastx_app.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie tblastx_app.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -ldl -lmbedtls -lmbedx509 -lmbedcrypto -lz -ldl -lm -lpthread -o tblastx +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f tblastx /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin +/bin/ln -f tblastx /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/tblastx +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -50775,24 +50809,24 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' +cd app/blastdb/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=blastdbcmd LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -DNCBI_APP_BUILT_AS=blastdb_path /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blastdb/blastdb_path.cpp -o blastdb_path.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie blastdb_path.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -ldl -lmbedtls -lmbedx509 -lmbedcrypto -lz -ldl -lm -lpthread -o blastdb_path -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdb_path /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin -/bin/ln -f blastdb_path /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/blastdb_path +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' -cd app/blastdb/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=blastdbcmd LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blastdb TMPL=blastdbcmd -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -DNCBI_APP_BUILT_AS=blastdb_convert /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blastdb/blastdb_convert.cpp -o blastdb_convert.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie blastdb_convert.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lwritedb -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -ldl -lmbedtls -lmbedx509 -lmbedcrypto -lz -ldl -lm -lpthread -o blastdb_convert +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdb_convert /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin +/bin/ln -f blastdb_convert /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/blastdb_convert make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blastdb TMPL=blastdbcmd -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blastdb/blastdbcmd.cpp:36: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -50906,24 +50940,18 @@ /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -DNCBI_APP_BUILT_AS=blastdb_convert /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blastdb/blastdb_convert.cpp -o blastdb_convert.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie blastdb_convert.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lwritedb -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -ldl -lmbedtls -lmbedx509 -lmbedcrypto -lz -ldl -lm -lpthread -o blastdb_convert -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdb_convert /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin -/bin/ln -f blastdb_convert /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/blastdb_convert -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' -cd app/blastdb/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=blastdbcp LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd app/blastdb/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=blastdbcp LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blastdb TMPL=blastdbcp -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blastdb TMPL=blastdbcp -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blastdb/blastdbcp.cpp:31: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -51038,23 +51066,23 @@ 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -DNCBI_APP_BUILT_AS=blastdbcheck /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blastdb/blastdbcheck.cpp -o blastdbcheck.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie blastdbcheck.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -ldl -lmbedtls -lmbedx509 -lmbedcrypto -lz -ldl -lm -lpthread -o blastdbcheck -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcheck /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin -/bin/ln -f blastdbcheck /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/blastdbcheck +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -DNCBI_APP_BUILT_AS=blastdb_path /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blastdb/blastdb_path.cpp -o blastdb_path.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie blastdb_path.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -ldl -lmbedtls -lmbedx509 -lmbedcrypto -lz -ldl -lm -lpthread -o blastdb_path +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdb_path /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin +/bin/ln -f blastdb_path /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/blastdb_path make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' -cd app/blastdb/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=makeblastdb LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd app/blastdb/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=makeblastdb LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blastdb TMPL=makeblastdb -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blastdb TMPL=makeblastdb -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blastdb/makeblastdb.cpp:38: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -51175,17 +51203,17 @@ /bin/ln -f blastdbcp /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/blastdbcp make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' -cd app/blastdb/ && /usr/bin/make -w -j3 --jobserver-auth=5,6 APP_PROJ=makeprofiledb LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd app/blastdb/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=makeprofiledb LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. +make[4]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blastdb TMPL=makeprofiledb -w -j3 --jobserver-auth=7,8 all -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blastdb TMPL=makeprofiledb -w -j4 --jobserver-auth=7,8 all +make[5]: warning: -j4 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blastdb/makeprofiledb.cpp:36: /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -51300,6 +51328,13 @@ 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -DNCBI_APP_BUILT_AS=blastdbcheck /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blastdb/blastdbcheck.cpp -o blastdbcheck.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie blastdbcheck.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -ldl -lmbedtls -lmbedx509 -lmbedcrypto -lz -ldl -lm -lpthread -o blastdbcheck +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcheck /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin +/bin/ln -f blastdbcheck /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/blastdbcheck +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -DNCBI_APP_BUILT_AS=blastdbcmd /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blastdb/blastdbcmd.cpp -o blastdbcmd.o /usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie blastdbcmd.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -ldl -lmbedtls -lmbedx509 -lmbedcrypto -lz -ldl -lm -lpthread -o blastdbcmd /bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcmd /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin @@ -51307,13 +51342,6 @@ make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -DNCBI_APP_BUILT_AS=makeprofiledb /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blastdb/makeprofiledb.cpp -o makeprofiledb.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie makeprofiledb.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lwritedb -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -ldl -lmbedtls -lmbedx509 -lmbedcrypto -lz -ldl -lm -lpthread -o makeprofiledb -/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f makeprofiledb /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin -/bin/ln -f makeprofiledb /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/makeprofiledb -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -DNCBI_APP_BUILT_AS=makeblastdb /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blastdb/makeblastdb.cpp -o makeblastdb.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -DNCBI_APP_BUILT_AS=makeblastdb /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blastdb/masked_range_set.cpp -o masked_range_set.o /usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie makeblastdb.o masked_range_set.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lwritedb -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -ldl -lmbedtls -lmbedx509 -lmbedcrypto -lz -ldl -lm -lpthread -o makeblastdb @@ -51321,6 +51349,13 @@ /bin/ln -f makeblastdb /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/makeblastdb make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/ncbi-blast+-2.11.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/include -DNCBI_APP_BUILT_AS=makeprofiledb /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/app/blastdb/makeprofiledb.cpp -o makeprofiledb.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie makeprofiledb.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/lib -lwritedb -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -ldl -lmbedtls -lmbedx509 -lmbedcrypto -lz -ldl -lm -lpthread -o makeprofiledb +/bin/bash /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f makeprofiledb /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin +/bin/ln -f makeprofiledb /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/bin/makeprofiledb +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' make[3]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build' make[2]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build' make[1]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds' @@ -51332,95 +51367,95 @@ debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds' dh_auto_test - cd c\+\+ && /usr/bin/make -j3 check VERBOSE=1 + cd c\+\+ && /usr/bin/make -j4 check VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++' if test -s ""; then \ - cd /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build && /usr/bin/make -w -j3 --jobserver-auth=3,4 check_p RUN_CHECK=Y; \ + cd /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build && /usr/bin/make -w -j4 --jobserver-auth=3,4 check_p RUN_CHECK=Y; \ else \ - cd /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build && /usr/bin/make -w -j3 --jobserver-auth=3,4 check_r RUN_CHECK=Y; \ + cd /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build && /usr/bin/make -w -j4 --jobserver-auth=3,4 check_r RUN_CHECK=Y; \ fi make[3]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build' -make[3]: warning: -j3 forced in submake: resetting jobserver mode. +make[3]: warning: -j4 forced in submake: resetting jobserver mode. ====================================================================== make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build' -make[4]: warning: -j3 forced in submake: resetting jobserver mode. -/usr/bin/make -C corelib -w -j3 --jobserver-auth=7,8 check_add_r || exit 5 +make[4]: warning: -j4 forced in submake: resetting jobserver mode. +/usr/bin/make -C corelib -w -j4 --jobserver-auth=7,8 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/corelib' -/usr/bin/make -C util -w -j3 --jobserver-auth=7,8 check_add_r || exit 5 +/usr/bin/make -C util -w -j4 --jobserver-auth=7,8 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -/usr/bin/make -C regexp -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +/usr/bin/make -C regexp -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. NOTE: Skipping project regexp due to unmet requirements: LocalPCRE make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/regexp' -make[7]: warning: -j3 forced in submake: resetting jobserver mode. +make[7]: warning: -j4 forced in submake: resetting jobserver mode. make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/regexp' -make[8]: warning: -j3 forced in submake: resetting jobserver mode. +make[8]: warning: -j4 forced in submake: resetting jobserver mode. make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/regexp' make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/regexp' -make[8]: warning: -j3 forced in submake: resetting jobserver mode. +make[8]: warning: -j4 forced in submake: resetting jobserver mode. make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/regexp' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/util/regexp TMPL=regexp -w -j3 --jobserver-auth=13,14 mark-as-disabled -make[8]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/util/regexp TMPL=regexp -w -j4 --jobserver-auth=13,14 mark-as-disabled +make[8]: warning: -j4 forced in submake: resetting jobserver mode. make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/regexp' make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/regexp' make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/regexp' make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/regexp' -/usr/bin/make -C xregexp -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C xregexp -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/xregexp' -/usr/bin/make -C compress -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C compress -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. -/usr/bin/make -C bzip2 -w -j3 --jobserver-auth=11,12 check_add_r || exit 5 +make[6]: warning: -j4 forced in submake: resetting jobserver mode. +/usr/bin/make -C bzip2 -w -j4 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/compress' -make[7]: warning: -j3 forced in submake: resetting jobserver mode. +make[7]: warning: -j4 forced in submake: resetting jobserver mode. NOTE: Skipping project bzip2 due to unmet requirements: LocalBZ2 make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/compress/bzip2' -make[8]: warning: -j3 forced in submake: resetting jobserver mode. +make[8]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/compress/bzip2' -make[9]: warning: -j3 forced in submake: resetting jobserver mode. +make[9]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/compress/bzip2' make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/compress/bzip2' -make[9]: warning: -j3 forced in submake: resetting jobserver mode. +make[9]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/compress/bzip2' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/util/compress/bzip2 TMPL=bzip2 -w -j3 --jobserver-auth=15,16 mark-as-disabled -make[9]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/util/compress/bzip2 TMPL=bzip2 -w -j4 --jobserver-auth=15,16 mark-as-disabled +make[9]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/compress/bzip2' make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/compress/bzip2' make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/compress/bzip2' make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/compress/bzip2' -/usr/bin/make -C zlib -w -j3 --jobserver-auth=11,12 check_add_r || exit 5 +/usr/bin/make -C zlib -w -j4 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/compress' -make[7]: warning: -j3 forced in submake: resetting jobserver mode. +make[7]: warning: -j4 forced in submake: resetting jobserver mode. NOTE: Skipping project zlib due to unmet requirements: LocalZ make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/compress/zlib' -make[8]: warning: -j3 forced in submake: resetting jobserver mode. +make[8]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/compress/zlib' -make[9]: warning: -j3 forced in submake: resetting jobserver mode. +make[9]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/compress/zlib' make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/compress/zlib' -make[9]: warning: -j3 forced in submake: resetting jobserver mode. +make[9]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/compress/zlib' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/util/compress/zlib TMPL=zlib -w -j3 --jobserver-auth=15,16 mark-as-disabled -make[9]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/util/compress/zlib TMPL=zlib -w -j4 --jobserver-auth=15,16 mark-as-disabled +make[9]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/compress/zlib' make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/compress/zlib' make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/compress/zlib' make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/compress/zlib' -/usr/bin/make -C api -w -j3 --jobserver-auth=11,12 check_add_r || exit 5 +/usr/bin/make -C api -w -j4 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/compress' -make[7]: warning: -j3 forced in submake: resetting jobserver mode. +make[7]: warning: -j4 forced in submake: resetting jobserver mode. make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/compress/api' make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/compress' @@ -51428,20 +51463,20 @@ Warning: non-existent sub-project "diff" /bin/echo 'Warning: non-existent sub-project "image"' Warning: non-existent sub-project "image" -/usr/bin/make -C tables -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C tables -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/tables' -/usr/bin/make -C sequtil -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C sequtil -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/sequtil' -/usr/bin/make -C bitset -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C bitset -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "demo"' @@ -51449,31 +51484,31 @@ make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/bitset' /bin/echo 'Warning: non-existent sub-project "qparse"' Warning: non-existent sub-project "qparse" -/usr/bin/make -C lmdb -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C lmdb -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. NOTE: Skipping project lmdb due to unmet requirements: LocalLMDB make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/lmdb' -make[7]: warning: -j3 forced in submake: resetting jobserver mode. +make[7]: warning: -j4 forced in submake: resetting jobserver mode. make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/lmdb' -make[8]: warning: -j3 forced in submake: resetting jobserver mode. +make[8]: warning: -j4 forced in submake: resetting jobserver mode. make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/lmdb' make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/lmdb' -make[8]: warning: -j3 forced in submake: resetting jobserver mode. +make[8]: warning: -j4 forced in submake: resetting jobserver mode. make[8]: *** No rule to make target '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/status/LocalLMDB.enabled', needed by 'requirements'. Stop. make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/lmdb' NOTE: skipping project "lmdb" due to unmet requirements make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/lmdb' -make[8]: warning: -j3 forced in submake: resetting jobserver mode. +make[8]: warning: -j4 forced in submake: resetting jobserver mode. make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/lmdb' make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/lmdb' make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/lmdb' -/usr/bin/make -C lmdbxx -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C lmdbxx -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/lmdbxx' -make[7]: warning: -j3 forced in submake: resetting jobserver mode. +make[7]: warning: -j4 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/lmdbxx' SKIP -- util/lmdbxx/lmdbxx_sample make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util/lmdbxx' @@ -51482,12 +51517,12 @@ /bin/echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/util' -/usr/bin/make -C connect -w -j3 --jobserver-auth=7,8 check_add_r || exit 5 +/usr/bin/make -C connect -w -j4 --jobserver-auth=7,8 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -/usr/bin/make -C services -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +/usr/bin/make -C services -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect/services' @@ -51498,67 +51533,67 @@ /bin/echo 'Warning: non-existent sub-project "daemons"' Warning: non-existent sub-project "daemons" make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/connect' -/usr/bin/make -C cgi -w -j3 --jobserver-auth=7,8 check_add_r || exit 5 +/usr/bin/make -C cgi -w -j4 --jobserver-auth=7,8 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/cgi' -/usr/bin/make -C html -w -j3 --jobserver-auth=7,8 check_add_r || exit 5 +/usr/bin/make -C html -w -j4 --jobserver-auth=7,8 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/html' -/usr/bin/make -C build-system -w -j3 --jobserver-auth=7,8 check_add_r || exit 5 +/usr/bin/make -C build-system -w -j4 --jobserver-auth=7,8 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -/usr/bin/make -C helpers -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +/usr/bin/make -C helpers -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/build-system' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/build-system/helpers' -make[7]: warning: -j3 forced in submake: resetting jobserver mode. +make[7]: warning: -j4 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/build-system/helpers' SKIP -- build-system/helpers/run_with_lock make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/build-system/helpers' -/usr/bin/make -C project_tree_builder -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C project_tree_builder -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/build-system' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/build-system/project_tree_builder' -make[7]: warning: -j3 forced in submake: resetting jobserver mode. +make[7]: warning: -j4 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/build-system/project_tree_builder' SKIP -- build-system/project_tree_builder/project_tree_builder -/usr/bin/make -C msbuild -w -j3 --jobserver-auth=11,12 check_add_r || exit 5 +/usr/bin/make -C msbuild -w -j4 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/build-system/project_tree_builder' -make[7]: warning: -j3 forced in submake: resetting jobserver mode. +make[7]: warning: -j4 forced in submake: resetting jobserver mode. NOTE: Skipping project msbuild due to unmet requirements: MSWin make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/build-system/project_tree_builder/msbuild' -make[8]: warning: -j3 forced in submake: resetting jobserver mode. +make[8]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/build-system/project_tree_builder/msbuild' -make[9]: warning: -j3 forced in submake: resetting jobserver mode. +make[9]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/build-system/project_tree_builder/msbuild' make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/build-system/project_tree_builder/msbuild' -make[9]: warning: -j3 forced in submake: resetting jobserver mode. +make[9]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/build-system/project_tree_builder/msbuild' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/project_tree_builder/msbuild TMPL=msbuild_dataobj -w -j3 --jobserver-auth=15,16 mark-as-disabled -make[9]: warning: -j3 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/build-system/project_tree_builder/msbuild TMPL=msbuild_dataobj -w -j4 --jobserver-auth=15,16 mark-as-disabled +make[9]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/build-system/project_tree_builder/msbuild' make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/build-system/project_tree_builder/msbuild' make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/build-system/project_tree_builder/msbuild' make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/build-system/project_tree_builder/msbuild' make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/build-system/project_tree_builder' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/build-system' -/usr/bin/make -C serial -w -j3 --jobserver-auth=7,8 check_add_r || exit 5 +/usr/bin/make -C serial -w -j4 --jobserver-auth=7,8 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -/usr/bin/make -C datatool -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +/usr/bin/make -C datatool -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/serial' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/serial/datatool' -make[7]: warning: -j3 forced in submake: resetting jobserver mode. +make[7]: warning: -j4 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/serial/datatool' TEST -- serial/datatool/datatool make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/serial/datatool' @@ -51566,18 +51601,18 @@ Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "soap"' Warning: non-existent sub-project "soap" -/usr/bin/make -C grpc_integration -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C grpc_integration -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/serial' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/serial/grpc_integration' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/serial' -/usr/bin/make -C db -w -j3 --jobserver-auth=7,8 check_add_r || exit 5 +/usr/bin/make -C db -w -j4 --jobserver-auth=7,8 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -/usr/bin/make -C sqlite -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +/usr/bin/make -C sqlite -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/db' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/db/sqlite' /bin/echo 'Warning: non-existent sub-project "bdb"' @@ -51585,356 +51620,356 @@ make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/db' /bin/echo 'Warning: non-existent sub-project "dbapi"' Warning: non-existent sub-project "dbapi" -/usr/bin/make -C objects -w -j3 --jobserver-auth=7,8 check_add_r || exit 5 +/usr/bin/make -C objects -w -j4 --jobserver-auth=7,8 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -/usr/bin/make -C general -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +/usr/bin/make -C general -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/general' -/usr/bin/make -C biblio -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C biblio -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/biblio' -/usr/bin/make -C medline -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C medline -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/medline' -/usr/bin/make -C pub -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C pub -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/pub' -/usr/bin/make -C seqcode -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C seqcode -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqcode' -/usr/bin/make -C seq -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C seq -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seq' -/usr/bin/make -C seqset -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C seqset -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqset' -/usr/bin/make -C submit -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C submit -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/submit' -/usr/bin/make -C seqedit -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C seqedit -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqedit' -/usr/bin/make -C seqsplit -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C seqsplit -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqsplit' -/usr/bin/make -C id1 -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C id1 -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/id1' -/usr/bin/make -C id2 -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C id2 -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/id2' -/usr/bin/make -C entrez2 -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C entrez2 -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/entrez2' -/usr/bin/make -C pubmed -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C pubmed -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/pubmed' -/usr/bin/make -C medlars -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C medlars -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/medlars' -/usr/bin/make -C mla -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C mla -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/mla' -/usr/bin/make -C proj -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C proj -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/proj' -/usr/bin/make -C scoremat -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C scoremat -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/scoremat' -/usr/bin/make -C blast -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C blast -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blast' -/usr/bin/make -C blastdb -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C blastdb -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blastdb' -/usr/bin/make -C blastxml -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C blastxml -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blastxml' -/usr/bin/make -C blastxml2 -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C blastxml2 -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/blastxml2' -/usr/bin/make -C mmdb -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C mmdb -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/mmdb' -/usr/bin/make -C cn3d -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C cn3d -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/cn3d' -/usr/bin/make -C cdd -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C cdd -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/cdd' -/usr/bin/make -C ncbimime -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C ncbimime -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/ncbimime' -/usr/bin/make -C pcsubstance -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C pcsubstance -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/pcsubstance' -/usr/bin/make -C pcassay -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C pcassay -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/pcassay' -/usr/bin/make -C gbseq -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C gbseq -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/gbseq' -/usr/bin/make -C insdseq -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C insdseq -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/insdseq' -/usr/bin/make -C tinyseq -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C tinyseq -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/tinyseq' -/usr/bin/make -C biotree -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C biotree -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/biotree' -/usr/bin/make -C entrezgene -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C entrezgene -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/entrezgene' -/usr/bin/make -C omssa -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C omssa -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/omssa' -/usr/bin/make -C remap -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C remap -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/remap' -/usr/bin/make -C seqtest -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C seqtest -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/seqtest' -/usr/bin/make -C taxon1 -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C taxon1 -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/taxon1' -/usr/bin/make -C taxon3 -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C taxon3 -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/taxon3' -/usr/bin/make -C gbproj -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C gbproj -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/gbproj' -/usr/bin/make -C trackmgr -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C trackmgr -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/trackmgr' -/usr/bin/make -C valerr -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C valerr -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/valerr' -/usr/bin/make -C valid -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C valid -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/valid' -/usr/bin/make -C access -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C access -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/access' -/usr/bin/make -C docsum -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C docsum -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/docsum' -/usr/bin/make -C featdef -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C featdef -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/featdef' -/usr/bin/make -C genomecoll -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C genomecoll -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. -/usr/bin/make -C gc_cli -w -j3 --jobserver-auth=11,12 check_add_r || exit 5 +make[6]: warning: -j4 forced in submake: resetting jobserver mode. +/usr/bin/make -C gc_cli -w -j4 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/genomecoll' -make[7]: warning: -j3 forced in submake: resetting jobserver mode. +make[7]: warning: -j4 forced in submake: resetting jobserver mode. make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/genomecoll/gc_cli' -make[8]: warning: -j3 forced in submake: resetting jobserver mode. +make[8]: warning: -j4 forced in submake: resetting jobserver mode. make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/genomecoll/gc_cli' SKIP -- objects/genomecoll/gc_cli/gc_cli (unmet build REQUIRES) make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/genomecoll/gc_cli' make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/genomecoll' -/usr/bin/make -C homologene -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C homologene -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/homologene' -/usr/bin/make -C mim -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C mim -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/mim' -/usr/bin/make -C objprt -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C objprt -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/objprt' -/usr/bin/make -C variation -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C variation -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/variation' -/usr/bin/make -C macro -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C macro -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/macro' -/usr/bin/make -C genesbyloc -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C genesbyloc -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/genesbyloc' -/usr/bin/make -C coords -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C coords -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/coords' -/usr/bin/make -C varrep -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C varrep -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/varrep' -/usr/bin/make -C variation_libs -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C variation_libs -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. -/usr/bin/make -C dbsnp -w -j3 --jobserver-auth=11,12 check_add_r || exit 5 +make[6]: warning: -j4 forced in submake: resetting jobserver mode. +/usr/bin/make -C dbsnp -w -j4 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/variation_libs' -make[7]: warning: -j3 forced in submake: resetting jobserver mode. -/usr/bin/make -C search_by_rsid -w -j3 --jobserver-auth=13,14 check_add_r || exit 5 +make[7]: warning: -j4 forced in submake: resetting jobserver mode. +/usr/bin/make -C search_by_rsid -w -j4 --jobserver-auth=13,14 check_add_r || exit 5 make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/variation_libs/dbsnp' -make[8]: warning: -j3 forced in submake: resetting jobserver mode. +make[8]: warning: -j4 forced in submake: resetting jobserver mode. make[8]: Nothing to be done for 'check_add_r'. make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/variation_libs/dbsnp/search_by_rsid' -/usr/bin/make -C tooltip_service -w -j3 --jobserver-auth=13,14 check_add_r || exit 5 +/usr/bin/make -C tooltip_service -w -j4 --jobserver-auth=13,14 check_add_r || exit 5 make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/variation_libs/dbsnp' -make[8]: warning: -j3 forced in submake: resetting jobserver mode. +make[8]: warning: -j4 forced in submake: resetting jobserver mode. make[8]: Nothing to be done for 'check_add_r'. make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/variation_libs/dbsnp/tooltip_service' make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/variation_libs/dbsnp' make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/variation_libs' -/usr/bin/make -C dbsnp -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C dbsnp -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. -/usr/bin/make -C primary_track -w -j3 --jobserver-auth=11,12 check_add_r || exit 5 +make[6]: warning: -j4 forced in submake: resetting jobserver mode. +/usr/bin/make -C primary_track -w -j4 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/dbsnp' -make[7]: warning: -j3 forced in submake: resetting jobserver mode. +make[7]: warning: -j4 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/dbsnp/primary_track' make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects/dbsnp' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objects' -/usr/bin/make -C objmgr -w -j3 --jobserver-auth=7,8 check_add_r || exit 5 +/usr/bin/make -C objmgr -w -j4 --jobserver-auth=7,8 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" -/usr/bin/make -C util -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C util -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objmgr' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objmgr/util' -/usr/bin/make -C split -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C split -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objmgr' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objmgr/split' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objmgr' -/usr/bin/make -C objtools -w -j3 --jobserver-auth=7,8 check_add_r || exit 5 +/usr/bin/make -C objtools -w -j4 --jobserver-auth=7,8 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -/usr/bin/make -C logging -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +/usr/bin/make -C logging -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/logging' /bin/echo 'Warning: non-existent sub-project "unit_test_util"' Warning: non-existent sub-project "unit_test_util" -/usr/bin/make -C readers -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C readers -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "app"' Warning: non-existent sub-project "app" /bin/echo 'Warning: non-existent sub-project "test"' @@ -51942,87 +51977,87 @@ /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/readers' -/usr/bin/make -C blast -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C blast -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. -/usr/bin/make -C seqdb_reader -w -j3 --jobserver-auth=11,12 check_add_r || exit 5 +make[6]: warning: -j4 forced in submake: resetting jobserver mode. +/usr/bin/make -C seqdb_reader -w -j4 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast' -make[7]: warning: -j3 forced in submake: resetting jobserver mode. -/usr/bin/make -C demo -w -j3 --jobserver-auth=13,14 check_add_r || exit 5 +make[7]: warning: -j4 forced in submake: resetting jobserver mode. +/usr/bin/make -C demo -w -j4 --jobserver-auth=13,14 check_add_r || exit 5 make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader' -make[8]: warning: -j3 forced in submake: resetting jobserver mode. +make[8]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' -make[9]: warning: -j3 forced in submake: resetting jobserver mode. +make[9]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' SKIP -- objtools/blast/seqdb_reader/demo/seqdb_demo make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' -/usr/bin/make -C test -w -j3 --jobserver-auth=13,14 check_add_r || exit 5 +/usr/bin/make -C test -w -j4 --jobserver-auth=13,14 check_add_r || exit 5 make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader' -make[8]: warning: -j3 forced in submake: resetting jobserver mode. +make[8]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/test' -make[9]: warning: -j3 forced in submake: resetting jobserver mode. +make[9]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/test' TEST -- objtools/blast/seqdb_reader/test/seqdb_perf make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/test' make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader' -/usr/bin/make -C seqdb_writer -w -j3 --jobserver-auth=11,12 check_add_r || exit 5 +/usr/bin/make -C seqdb_writer -w -j4 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast' -make[7]: warning: -j3 forced in submake: resetting jobserver mode. -/usr/bin/make -C unit_test -w -j3 --jobserver-auth=13,14 check_add_r || exit 5 +make[7]: warning: -j4 forced in submake: resetting jobserver mode. +/usr/bin/make -C unit_test -w -j4 --jobserver-auth=13,14 check_add_r || exit 5 make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer' -make[8]: warning: -j3 forced in submake: resetting jobserver mode. +make[8]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' -make[9]: warning: -j3 forced in submake: resetting jobserver mode. +make[9]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' TEST -- objtools/blast/seqdb_writer/unit_test/writedb_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' -make[9]: warning: -j3 forced in submake: resetting jobserver mode. +make[9]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' TEST -- objtools/blast/seqdb_writer/unit_test/writedb_lmdb_unit_test make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer' -/usr/bin/make -C gene_info_reader -w -j3 --jobserver-auth=11,12 check_add_r || exit 5 +/usr/bin/make -C gene_info_reader -w -j4 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast' -make[7]: warning: -j3 forced in submake: resetting jobserver mode. -/usr/bin/make -C demo -w -j3 --jobserver-auth=13,14 check_add_r || exit 5 +make[7]: warning: -j4 forced in submake: resetting jobserver mode. +/usr/bin/make -C demo -w -j4 --jobserver-auth=13,14 check_add_r || exit 5 make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader' -make[8]: warning: -j3 forced in submake: resetting jobserver mode. +make[8]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/demo' -make[9]: warning: -j3 forced in submake: resetting jobserver mode. +make[9]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/demo' SKIP -- objtools/blast/gene_info_reader/demo/gene_info_reader make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/demo' -/usr/bin/make -C unit_test -w -j3 --jobserver-auth=13,14 check_add_r || exit 5 +/usr/bin/make -C unit_test -w -j4 --jobserver-auth=13,14 check_add_r || exit 5 make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader' -make[8]: warning: -j3 forced in submake: resetting jobserver mode. +make[8]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' -make[9]: warning: -j3 forced in submake: resetting jobserver mode. +make[9]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' TEST -- objtools/blast/gene_info_reader/unit_test/gene_info_unit_test make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader' /bin/echo 'Warning: non-existent sub-project "gene_info_writer"' Warning: non-existent sub-project "gene_info_writer" -/usr/bin/make -C services -w -j3 --jobserver-auth=11,12 check_add_r || exit 5 +/usr/bin/make -C services -w -j4 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast' -make[7]: warning: -j3 forced in submake: resetting jobserver mode. -/usr/bin/make -C unit_test -w -j3 --jobserver-auth=13,14 check_add_r || exit 5 +make[7]: warning: -j4 forced in submake: resetting jobserver mode. +/usr/bin/make -C unit_test -w -j4 --jobserver-auth=13,14 check_add_r || exit 5 make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/services' -make[8]: warning: -j3 forced in submake: resetting jobserver mode. +make[8]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/services/unit_test' -make[9]: warning: -j3 forced in submake: resetting jobserver mode. +make[9]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/services/unit_test' SKIP -- objtools/blast/services/unit_test/blast_services_unit_test make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/services/unit_test' make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/services' -/usr/bin/make -C blastdb_format -w -j3 --jobserver-auth=11,12 check_add_r || exit 5 +/usr/bin/make -C blastdb_format -w -j4 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast' -make[7]: warning: -j3 forced in submake: resetting jobserver mode. -/usr/bin/make -C unit_test -w -j3 --jobserver-auth=13,14 check_add_r || exit 5 +make[7]: warning: -j4 forced in submake: resetting jobserver mode. +/usr/bin/make -C unit_test -w -j4 --jobserver-auth=13,14 check_add_r || exit 5 make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' -make[8]: warning: -j3 forced in submake: resetting jobserver mode. +make[8]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' -make[9]: warning: -j3 forced in submake: resetting jobserver mode. +make[9]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' TEST -- objtools/blast/blastdb_format/unit_test/blastdb_format_unit_test make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' @@ -52030,21 +52065,21 @@ make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/blast' /bin/echo 'Warning: non-existent sub-project "lds2"' Warning: non-existent sub-project "lds2" -/usr/bin/make -C pubseq_gateway -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C pubseq_gateway -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "diag"' Warning: non-existent sub-project "diag" /bin/echo 'Warning: non-existent sub-project "cassandra"' Warning: non-existent sub-project "cassandra" -/usr/bin/make -C client -w -j3 --jobserver-auth=11,12 check_add_r || exit 5 +/usr/bin/make -C client -w -j4 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/pubseq_gateway' -make[7]: warning: -j3 forced in submake: resetting jobserver mode. -/usr/bin/make -C test -w -j3 --jobserver-auth=13,14 check_add_r || exit 5 +make[7]: warning: -j4 forced in submake: resetting jobserver mode. +/usr/bin/make -C test -w -j4 --jobserver-auth=13,14 check_add_r || exit 5 make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' -make[8]: warning: -j3 forced in submake: resetting jobserver mode. +make[8]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client/test' -make[9]: warning: -j3 forced in submake: resetting jobserver mode. +make[9]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client/test' SKIP -- objtools/pubseq_gateway/client/test/test_psg_client_impl (unmet build REQUIRES) make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client/test' @@ -52054,34 +52089,34 @@ /bin/echo 'Warning: non-existent sub-project "cache"' Warning: non-existent sub-project "cache" make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/pubseq_gateway' -/usr/bin/make -C data_loaders -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C data_loaders -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. -/usr/bin/make -C genbank -w -j3 --jobserver-auth=11,12 check_add_r || exit 5 +make[6]: warning: -j4 forced in submake: resetting jobserver mode. +/usr/bin/make -C genbank -w -j4 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders' -make[7]: warning: -j3 forced in submake: resetting jobserver mode. -/usr/bin/make -C cache -w -j3 --jobserver-auth=13,14 check_add_r || exit 5 +make[7]: warning: -j4 forced in submake: resetting jobserver mode. +/usr/bin/make -C cache -w -j4 --jobserver-auth=13,14 check_add_r || exit 5 make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' -make[8]: warning: -j3 forced in submake: resetting jobserver mode. +make[8]: warning: -j4 forced in submake: resetting jobserver mode. make[8]: Nothing to be done for 'check_add_r'. make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/cache' /bin/echo 'Warning: non-existent sub-project "pubseq"' Warning: non-existent sub-project "pubseq" -/usr/bin/make -C id2 -w -j3 --jobserver-auth=13,14 check_add_r || exit 5 +/usr/bin/make -C id2 -w -j4 --jobserver-auth=13,14 check_add_r || exit 5 make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' -make[8]: warning: -j3 forced in submake: resetting jobserver mode. +make[8]: warning: -j4 forced in submake: resetting jobserver mode. make[8]: Nothing to be done for 'check_add_r'. make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' -/usr/bin/make -C id1 -w -j3 --jobserver-auth=13,14 check_add_r || exit 5 +/usr/bin/make -C id1 -w -j4 --jobserver-auth=13,14 check_add_r || exit 5 make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' -make[8]: warning: -j3 forced in submake: resetting jobserver mode. +make[8]: warning: -j4 forced in submake: resetting jobserver mode. make[8]: Nothing to be done for 'check_add_r'. make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' /bin/echo 'Warning: non-existent sub-project "pubseq2"' Warning: non-existent sub-project "pubseq2" -/usr/bin/make -C gicache -w -j3 --jobserver-auth=13,14 check_add_r || exit 5 +/usr/bin/make -C gicache -w -j4 --jobserver-auth=13,14 check_add_r || exit 5 make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' -make[8]: warning: -j3 forced in submake: resetting jobserver mode. +make[8]: warning: -j4 forced in submake: resetting jobserver mode. make[8]: Nothing to be done for 'check_add_r'. make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/gicache' /bin/echo 'Warning: non-existent sub-project "test"' @@ -52089,9 +52124,9 @@ make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' /bin/echo 'Warning: non-existent sub-project "lds2"' Warning: non-existent sub-project "lds2" -/usr/bin/make -C blastdb -w -j3 --jobserver-auth=11,12 check_add_r || exit 5 +/usr/bin/make -C blastdb -w -j4 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders' -make[7]: warning: -j3 forced in submake: resetting jobserver mode. +make[7]: warning: -j4 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' @@ -52102,14 +52137,14 @@ /bin/echo 'Warning: non-existent sub-project "cdd"' Warning: non-existent sub-project "cdd" make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/data_loaders' -/usr/bin/make -C simple -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C simple -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/simple' -/usr/bin/make -C alnmgr -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C alnmgr -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" /bin/echo 'Warning: non-existent sub-project "unit_test"' @@ -52121,21 +52156,21 @@ Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "manip"' Warning: non-existent sub-project "manip" -/usr/bin/make -C edit -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C edit -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/edit' -/usr/bin/make -C cleanup -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C cleanup -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/cleanup' -/usr/bin/make -C format -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C format -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/format' /bin/echo 'Warning: non-existent sub-project "validator"' @@ -52144,22 +52179,22 @@ Warning: non-existent sub-project "asniotest" /bin/echo 'Warning: non-existent sub-project "align"' Warning: non-existent sub-project "align" -/usr/bin/make -C seqmasks_io -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C seqmasks_io -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/seqmasks_io' /bin/echo 'Warning: non-existent sub-project "eutils"' Warning: non-existent sub-project "eutils" -/usr/bin/make -C align_format -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C align_format -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. -/usr/bin/make -C unit_test -w -j3 --jobserver-auth=11,12 check_add_r || exit 5 +make[6]: warning: -j4 forced in submake: resetting jobserver mode. +/usr/bin/make -C unit_test -w -j4 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/align_format' -make[7]: warning: -j3 forced in submake: resetting jobserver mode. +make[7]: warning: -j4 forced in submake: resetting jobserver mode. make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/align_format/unit_test' -make[8]: warning: -j3 forced in submake: resetting jobserver mode. +make[8]: warning: -j4 forced in submake: resetting jobserver mode. make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/align_format/unit_test' TEST -- objtools/align_format/unit_test/align_format_unit_test make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/objtools/align_format/unit_test' @@ -52181,78 +52216,78 @@ Warning: non-existent sub-project "ctools" /bin/echo 'Warning: non-existent sub-project "sra"' Warning: non-existent sub-project "sra" -/usr/bin/make -C algo -w -j3 --jobserver-auth=7,8 check_add_r || exit 5 +/usr/bin/make -C algo -w -j4 --jobserver-auth=7,8 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -/usr/bin/make -C dustmask -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +/usr/bin/make -C dustmask -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/dustmask' -/usr/bin/make -C winmask -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C winmask -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/winmask' /bin/echo 'Warning: non-existent sub-project "sequence"' Warning: non-existent sub-project "sequence" -/usr/bin/make -C blast -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C blast -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. -/usr/bin/make -C composition_adjustment -w -j3 --jobserver-auth=11,12 check_add_r || exit 5 +make[6]: warning: -j4 forced in submake: resetting jobserver mode. +/usr/bin/make -C composition_adjustment -w -j4 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast' -make[7]: warning: -j3 forced in submake: resetting jobserver mode. +make[7]: warning: -j4 forced in submake: resetting jobserver mode. make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/composition_adjustment' -/usr/bin/make -C core -w -j3 --jobserver-auth=11,12 check_add_r || exit 5 +/usr/bin/make -C core -w -j4 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast' -make[7]: warning: -j3 forced in submake: resetting jobserver mode. +make[7]: warning: -j4 forced in submake: resetting jobserver mode. make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/core' -/usr/bin/make -C dbindex -w -j3 --jobserver-auth=11,12 check_add_r || exit 5 +/usr/bin/make -C dbindex -w -j4 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast' -make[7]: warning: -j3 forced in submake: resetting jobserver mode. -/usr/bin/make -C makeindex -w -j3 --jobserver-auth=13,14 check_add_r || exit 5 +make[7]: warning: -j4 forced in submake: resetting jobserver mode. +/usr/bin/make -C makeindex -w -j4 --jobserver-auth=13,14 check_add_r || exit 5 make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/dbindex' -make[8]: warning: -j3 forced in submake: resetting jobserver mode. +make[8]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/dbindex/makeindex' -make[9]: warning: -j3 forced in submake: resetting jobserver mode. +make[9]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/dbindex/makeindex' SKIP -- algo/blast/dbindex/makeindex/makeindex make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/dbindex/makeindex' make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/dbindex' /bin/echo 'Warning: non-existent sub-project "dbindex_search"' Warning: non-existent sub-project "dbindex_search" -/usr/bin/make -C api -w -j3 --jobserver-auth=11,12 check_add_r || exit 5 +/usr/bin/make -C api -w -j4 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast' -make[7]: warning: -j3 forced in submake: resetting jobserver mode. +make[7]: warning: -j4 forced in submake: resetting jobserver mode. make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/api' -/usr/bin/make -C proteinkmer -w -j3 --jobserver-auth=11,12 check_add_r || exit 5 +/usr/bin/make -C proteinkmer -w -j4 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast' -make[7]: warning: -j3 forced in submake: resetting jobserver mode. -/usr/bin/make -C unit_test -w -j3 --jobserver-auth=13,14 check_add_r || exit 5 +make[7]: warning: -j4 forced in submake: resetting jobserver mode. +/usr/bin/make -C unit_test -w -j4 --jobserver-auth=13,14 check_add_r || exit 5 make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/proteinkmer' -make[8]: warning: -j3 forced in submake: resetting jobserver mode. +make[8]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/proteinkmer/unit_test' -make[9]: warning: -j3 forced in submake: resetting jobserver mode. +make[9]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/proteinkmer/unit_test' TEST -- algo/blast/proteinkmer/unit_test/proteinkmer_unit_test make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/proteinkmer/unit_test' make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/proteinkmer' -/usr/bin/make -C format -w -j3 --jobserver-auth=11,12 check_add_r || exit 5 +/usr/bin/make -C format -w -j4 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast' -make[7]: warning: -j3 forced in submake: resetting jobserver mode. +make[7]: warning: -j4 forced in submake: resetting jobserver mode. make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/format' -/usr/bin/make -C blastinput -w -j3 --jobserver-auth=11,12 check_add_r || exit 5 +/usr/bin/make -C blastinput -w -j4 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast' -make[7]: warning: -j3 forced in submake: resetting jobserver mode. -/usr/bin/make -C unit_test -w -j3 --jobserver-auth=13,14 check_add_r || exit 5 +make[7]: warning: -j4 forced in submake: resetting jobserver mode. +/usr/bin/make -C unit_test -w -j4 --jobserver-auth=13,14 check_add_r || exit 5 make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/blastinput' -make[8]: warning: -j3 forced in submake: resetting jobserver mode. +make[8]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/blastinput/unit_test' -make[9]: warning: -j3 forced in submake: resetting jobserver mode. +make[9]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/blastinput/unit_test' TEST -- algo/blast/blastinput/unit_test/blastinput_unit_test make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/blastinput/unit_test' @@ -52261,249 +52296,249 @@ make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/blastinput' /bin/echo 'Warning: non-existent sub-project "blast_sra_input"' Warning: non-existent sub-project "blast_sra_input" -/usr/bin/make -C igblast -w -j3 --jobserver-auth=11,12 check_add_r || exit 5 +/usr/bin/make -C igblast -w -j4 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast' -make[7]: warning: -j3 forced in submake: resetting jobserver mode. +make[7]: warning: -j4 forced in submake: resetting jobserver mode. make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/igblast' /bin/echo 'Warning: non-existent sub-project "gumbel_params"' Warning: non-existent sub-project "gumbel_params" -/usr/bin/make -C unit_tests -w -j3 --jobserver-auth=11,12 check_add_r || exit 5 +/usr/bin/make -C unit_tests -w -j4 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast' -make[7]: warning: -j3 forced in submake: resetting jobserver mode. -/usr/bin/make -C blast_format -w -j3 --jobserver-auth=13,14 check_add_r || exit 5 +make[7]: warning: -j4 forced in submake: resetting jobserver mode. +/usr/bin/make -C blast_format -w -j4 --jobserver-auth=13,14 check_add_r || exit 5 make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests' -make[8]: warning: -j3 forced in submake: resetting jobserver mode. +make[8]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/blast_format' -make[9]: warning: -j3 forced in submake: resetting jobserver mode. +make[9]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/blast_format' TEST -- algo/blast/unit_tests/blast_format/blast_format_unit_test make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/blast_format' -/usr/bin/make -C blastdb -w -j3 --jobserver-auth=13,14 check_add_r || exit 5 +/usr/bin/make -C blastdb -w -j4 --jobserver-auth=13,14 check_add_r || exit 5 make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests' -make[8]: warning: -j3 forced in submake: resetting jobserver mode. +make[8]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/blastdb' -make[9]: warning: -j3 forced in submake: resetting jobserver mode. +make[9]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/blastdb' TEST -- algo/blast/unit_tests/blastdb/bdbloader_unit_test make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/blastdb' -/usr/bin/make -C seqdb_reader -w -j3 --jobserver-auth=13,14 check_add_r || exit 5 +/usr/bin/make -C seqdb_reader -w -j4 --jobserver-auth=13,14 check_add_r || exit 5 make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests' -make[8]: warning: -j3 forced in submake: resetting jobserver mode. +make[8]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -make[9]: warning: -j3 forced in submake: resetting jobserver mode. +make[9]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' TEST -- algo/blast/unit_tests/seqdb_reader/seqdb_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -make[9]: warning: -j3 forced in submake: resetting jobserver mode. +make[9]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' TEST -- algo/blast/unit_tests/seqdb_reader/seqdb_lmdb_unit_test make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -/usr/bin/make -C api -w -j3 --jobserver-auth=13,14 check_add_r || exit 5 +/usr/bin/make -C api -w -j4 --jobserver-auth=13,14 check_add_r || exit 5 make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests' -make[8]: warning: -j3 forced in submake: resetting jobserver mode. +make[8]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j3 forced in submake: resetting jobserver mode. +make[9]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/blast_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j3 forced in submake: resetting jobserver mode. +make[9]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/aalookup_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j3 forced in submake: resetting jobserver mode. +make[9]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/seqsrc_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j3 forced in submake: resetting jobserver mode. +make[9]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/delta_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j3 forced in submake: resetting jobserver mode. +make[9]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/ntlookup_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j3 forced in submake: resetting jobserver mode. +make[9]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/seqinfosrc_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j3 forced in submake: resetting jobserver mode. +make[9]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/setupfactory_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j3 forced in submake: resetting jobserver mode. +make[9]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/search_strategy_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j3 forced in submake: resetting jobserver mode. +make[9]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/redoalignment_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j3 forced in submake: resetting jobserver mode. +make[9]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/queryinfo_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j3 forced in submake: resetting jobserver mode. +make[9]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/querydata_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j3 forced in submake: resetting jobserver mode. +make[9]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/pssmenginefreqratios_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j3 forced in submake: resetting jobserver mode. +make[9]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/blastsetup_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j3 forced in submake: resetting jobserver mode. +make[9]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/blastextend_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j3 forced in submake: resetting jobserver mode. +make[9]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/blastdiag_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j3 forced in submake: resetting jobserver mode. +make[9]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/pssmcreate_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j3 forced in submake: resetting jobserver mode. +make[9]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/psiblast_iteration_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j3 forced in submake: resetting jobserver mode. +make[9]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/hspfilter_besthit_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j3 forced in submake: resetting jobserver mode. +make[9]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/hspfilter_culling_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j3 forced in submake: resetting jobserver mode. +make[9]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/optionshandle_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j3 forced in submake: resetting jobserver mode. +make[9]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/msa2pssm_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j3 forced in submake: resetting jobserver mode. +make[9]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/tracebacksearch_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j3 forced in submake: resetting jobserver mode. +make[9]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/traceback_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j3 forced in submake: resetting jobserver mode. +make[9]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/psibl2seq_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j3 forced in submake: resetting jobserver mode. +make[9]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/psiblast_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j3 forced in submake: resetting jobserver mode. +make[9]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/prelimsearch_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j3 forced in submake: resetting jobserver mode. +make[9]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/phiblast_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j3 forced in submake: resetting jobserver mode. +make[9]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/split_query_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j3 forced in submake: resetting jobserver mode. +make[9]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/scoreblk_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j3 forced in submake: resetting jobserver mode. +make[9]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/hspstream_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j3 forced in submake: resetting jobserver mode. +make[9]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/rps_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j3 forced in submake: resetting jobserver mode. +make[9]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/gapinfo_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j3 forced in submake: resetting jobserver mode. +make[9]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/blasthits_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j3 forced in submake: resetting jobserver mode. +make[9]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/linkhsp_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j3 forced in submake: resetting jobserver mode. +make[9]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/blastengine_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j3 forced in submake: resetting jobserver mode. +make[9]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/subj_ranges_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j3 forced in submake: resetting jobserver mode. +make[9]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/version_reference_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j3 forced in submake: resetting jobserver mode. +make[9]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/ntscan_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j3 forced in submake: resetting jobserver mode. +make[9]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/aascan_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j3 forced in submake: resetting jobserver mode. +make[9]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/remote_blast_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j3 forced in submake: resetting jobserver mode. +make[9]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/uniform_search_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j3 forced in submake: resetting jobserver mode. +make[9]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/blastfilter_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j3 forced in submake: resetting jobserver mode. +make[9]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/blastoptions_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j3 forced in submake: resetting jobserver mode. +make[9]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/gencode_singleton_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j3 forced in submake: resetting jobserver mode. +make[9]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/bl2seq_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j3 forced in submake: resetting jobserver mode. +make[9]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/stat_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j3 forced in submake: resetting jobserver mode. +make[9]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/magicblast_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j3 forced in submake: resetting jobserver mode. +make[9]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/rmblast_blasthits_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j3 forced in submake: resetting jobserver mode. +make[9]: warning: -j4 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/rmblast_traceback_unit_test make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests' make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast' -/usr/bin/make -C segmask -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C segmask -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/segmask' /bin/echo 'Warning: non-existent sub-project "align"' @@ -52529,21 +52564,21 @@ /bin/echo 'Warning: non-existent sub-project "id_mapper"' Warning: non-existent sub-project "id_mapper" make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo' -/usr/bin/make -C misc -w -j3 --jobserver-auth=7,8 check_add_r || exit 5 +/usr/bin/make -C misc -w -j4 --jobserver-auth=7,8 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. -/usr/bin/make -C third_party -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +make[5]: warning: -j4 forced in submake: resetting jobserver mode. +/usr/bin/make -C third_party -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/misc' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/misc/third_party' -/usr/bin/make -C third_party_static -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C third_party_static -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/misc' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. NOTE: Skipping project third_party_static due to unmet requirements: -DLL make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/misc/third_party_static' -make[7]: warning: -j3 forced in submake: resetting jobserver mode. +make[7]: warning: -j4 forced in submake: resetting jobserver mode. make[7]: Nothing to be done for 'mark-as-disabled_r'. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/misc/third_party_static' make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/misc/third_party_static' @@ -52565,18 +52600,18 @@ Warning: non-existent sub-project "hgvs" /bin/echo 'Warning: non-existent sub-project "netstorage"' Warning: non-existent sub-project "netstorage" -/usr/bin/make -C jsonwrapp -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C jsonwrapp -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/misc' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. -/usr/bin/make -C test -w -j3 --jobserver-auth=11,12 check_add_r || exit 5 +make[6]: warning: -j4 forced in submake: resetting jobserver mode. +/usr/bin/make -C test -w -j4 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/misc/jsonwrapp' -make[7]: warning: -j3 forced in submake: resetting jobserver mode. +make[7]: warning: -j4 forced in submake: resetting jobserver mode. make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/misc/jsonwrapp/test' -make[8]: warning: -j3 forced in submake: resetting jobserver mode. +make[8]: warning: -j4 forced in submake: resetting jobserver mode. make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/misc/jsonwrapp/test' TEST -- misc/jsonwrapp/test/test_jsonwrapp make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/misc/jsonwrapp/test' -make[8]: warning: -j3 forced in submake: resetting jobserver mode. +make[8]: warning: -j4 forced in submake: resetting jobserver mode. make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/misc/jsonwrapp/test' TEST -- misc/jsonwrapp/test/test_jsonwrapp10 make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/misc/jsonwrapp/test' @@ -52596,9 +52631,9 @@ make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/misc' /bin/echo 'Warning: non-existent sub-project "gui"' Warning: non-existent sub-project "gui" -/usr/bin/make -C app -w -j3 --jobserver-auth=7,8 check_add_r || exit 5 +/usr/bin/make -C app -w -j4 --jobserver-auth=7,8 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build' -make[5]: warning: -j3 forced in submake: resetting jobserver mode. +make[5]: warning: -j4 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "asn2asn"' Warning: non-existent sub-project "asn2asn" /bin/echo 'Warning: non-existent sub-project "asn2fasta"' @@ -52613,55 +52648,55 @@ Warning: non-existent sub-project "asn_cleanup" /bin/echo 'Warning: non-existent sub-project "id1_fetch"' Warning: non-existent sub-project "id1_fetch" -/usr/bin/make -C blast -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C blast -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -make[7]: warning: -j3 forced in submake: resetting jobserver mode. +make[7]: warning: -j4 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' SKIP -- app/blast/blastp make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -make[7]: warning: -j3 forced in submake: resetting jobserver mode. +make[7]: warning: -j4 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' SKIP -- app/blast/blastn make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -make[7]: warning: -j3 forced in submake: resetting jobserver mode. +make[7]: warning: -j4 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' SKIP -- app/blast/blastx make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -make[7]: warning: -j3 forced in submake: resetting jobserver mode. +make[7]: warning: -j4 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' SKIP -- app/blast/tblastn make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -make[7]: warning: -j3 forced in submake: resetting jobserver mode. +make[7]: warning: -j4 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' SKIP -- app/blast/tblastx make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -make[7]: warning: -j3 forced in submake: resetting jobserver mode. +make[7]: warning: -j4 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' SKIP -- app/blast/psiblast make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -make[7]: warning: -j3 forced in submake: resetting jobserver mode. +make[7]: warning: -j4 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' SKIP -- app/blast/rpsblast make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -make[7]: warning: -j3 forced in submake: resetting jobserver mode. +make[7]: warning: -j4 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' SKIP -- app/blast/rpstblastn make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -make[7]: warning: -j3 forced in submake: resetting jobserver mode. +make[7]: warning: -j4 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' SKIP -- app/blast/blast_formatter make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -make[7]: warning: -j3 forced in submake: resetting jobserver mode. +make[7]: warning: -j4 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' SKIP -- app/blast/blast_report make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -make[7]: warning: -j3 forced in submake: resetting jobserver mode. +make[7]: warning: -j4 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' SKIP -- app/blast/deltablast make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' -make[7]: warning: -j3 forced in submake: resetting jobserver mode. +make[7]: warning: -j4 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' SKIP -- app/blast/seedtop make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blast' @@ -52681,67 +52716,67 @@ Warning: non-existent sub-project "netstorage" /bin/echo 'Warning: non-existent sub-project "igblast"' Warning: non-existent sub-project "igblast" -/usr/bin/make -C winmasker -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C winmasker -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/winmasker' -make[7]: warning: -j3 forced in submake: resetting jobserver mode. +make[7]: warning: -j4 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/winmasker' SKIP -- app/winmasker/winmasker make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/winmasker' -/usr/bin/make -C dustmasker -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C dustmasker -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/dustmasker' -make[7]: warning: -j3 forced in submake: resetting jobserver mode. +make[7]: warning: -j4 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/dustmasker' SKIP -- app/dustmasker/dustmasker make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/dustmasker' -/usr/bin/make -C segmasker -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C segmasker -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/segmasker' -make[7]: warning: -j3 forced in submake: resetting jobserver mode. +make[7]: warning: -j4 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/segmasker' SKIP -- app/segmasker/segmasker make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/segmasker' -/usr/bin/make -C blastdb -w -j3 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C blastdb -w -j4 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app' -make[6]: warning: -j3 forced in submake: resetting jobserver mode. +make[6]: warning: -j4 forced in submake: resetting jobserver mode. make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' -make[7]: warning: -j3 forced in submake: resetting jobserver mode. +make[7]: warning: -j4 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' SKIP -- app/blastdb/blastdbcmd make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' -make[7]: warning: -j3 forced in submake: resetting jobserver mode. +make[7]: warning: -j4 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' SKIP -- app/blastdb/makeblastdb make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' -make[7]: warning: -j3 forced in submake: resetting jobserver mode. +make[7]: warning: -j4 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' SKIP -- app/blastdb/blastdb_aliastool make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' -make[7]: warning: -j3 forced in submake: resetting jobserver mode. +make[7]: warning: -j4 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' SKIP -- app/blastdb/blastdbcheck make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' -make[7]: warning: -j3 forced in submake: resetting jobserver mode. +make[7]: warning: -j4 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' SKIP -- app/blastdb/convert2blastmask make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' -make[7]: warning: -j3 forced in submake: resetting jobserver mode. +make[7]: warning: -j4 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' SKIP -- app/blastdb/blastdbcp make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' -make[7]: warning: -j3 forced in submake: resetting jobserver mode. +make[7]: warning: -j4 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' SKIP -- app/blastdb/makeprofiledb make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' -make[7]: warning: -j3 forced in submake: resetting jobserver mode. +make[7]: warning: -j4 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' SKIP -- app/blastdb/blastdb_convert make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' -make[7]: warning: -j3 forced in submake: resetting jobserver mode. +make[7]: warning: -j4 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' SKIP -- app/blastdb/blastdb_path make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/app/blastdb' @@ -52902,12 +52937,12 @@ Testing, please wait... -OK -- [serial/datatool] datatool.sh (real 0.73, user 0.54, sys 0.17) +OK -- [serial/datatool] datatool.sh (real 3.60, user 0.78, sys 0.21) SKP -- [serial/datatool] datatool_xml.sh -OK -- [objtools/blast/gene_info_reader/unit_test] gene_info_unit_test (real 0.05, user 0.03, sys 0.03) -ERR [200] -- [algo/blast/proteinkmer/unit_test] proteinkmer_unit_test (real 0.18, user 0.12, sys 0.06) -ERR [200] -- [algo/blast/unit_tests/api] blastdiag_unit_test (real 0.06, user 0.04, sys 0.02) -TO -- [algo/blast/unit_tests/api] aascan_unit_test (real 200.22, user 0.25, sys 0.13) +OK -- [objtools/blast/gene_info_reader/unit_test] gene_info_unit_test (real 0.41, user 0.05, sys 0.03) +ERR [200] -- [algo/blast/proteinkmer/unit_test] proteinkmer_unit_test (real 0.73, user 0.16, sys 0.06) +ERR [200] -- [algo/blast/unit_tests/api] blastdiag_unit_test (real 0.28, user 0.05, sys 0.04) +TO -- [algo/blast/unit_tests/api] aascan_unit_test (real 201.76, user 0.39, sys 0.13) ABS -- [misc/jsonwrapp/test] test_jsonwrapp ABS -- [misc/jsonwrapp/test] test_jsonwrapp10 @@ -52920,21 +52955,21 @@ make[3]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build' make[2]: *** [Makefile:33: check] Error 2 make[2]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.11.0+ds/c++' -dh_auto_test: error: cd c\+\+ && /usr/bin/make -j3 check VERBOSE=1 returned exit code 2 +dh_auto_test: error: cd c\+\+ && /usr/bin/make -j4 check VERBOSE=1 returned exit code 2 make[1]: [debian/rules:81: override_dh_auto_test] Error 25 (ignored) c++/BUILD/build/check.sh concat_err cat c++/BUILD/build/check.sh.out_err -ERR [200] -- [algo/blast/proteinkmer/unit_test] proteinkmer_unit_test (real 0.18, user 0.12, sys 0.06) -ERR [200] -- [algo/blast/unit_tests/api] blastdiag_unit_test (real 0.06, user 0.04, sys 0.02) -TO -- [algo/blast/unit_tests/api] aascan_unit_test (real 200.22, user 0.25, sys 0.13) +ERR [200] -- [algo/blast/proteinkmer/unit_test] proteinkmer_unit_test (real 0.73, user 0.16, sys 0.06) +ERR [200] -- [algo/blast/unit_tests/api] blastdiag_unit_test (real 0.28, user 0.05, sys 0.04) +TO -- [algo/blast/unit_tests/api] aascan_unit_test (real 201.76, user 0.39, sys 0.13) ====================================================================== proteinkmer_unit_test ====================================================================== -19327/000/0000/PB FDD14B7F5C1F27E1 0001/0001 2024-02-05T20:49:02.763970 virt32c UNK_CLIENT UNK_SESSION proteinkmer_unit_test start /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/proteinkmer/unit_test/proteinkmer_unit_test -19327/000/0000/PB FDD14B7F5C1F27E1 0002/0002 2024-02-05T20:49:02.765094 virt32c UNK_CLIENT UNK_SESSION proteinkmer_unit_test extra ncbi_app_username=pbuilder1&ncbi_app_path=/build/reproducible-path/ncbi-blast%2B-2.11.0%2Bds/c%2B%2B/BUILD/build/algo/blast/proteinkmer/unit_test/proteinkmer_unit_test&ncbi_app_build_date=Feb++1+2021+02:23:21&ncbi_app_package_name=blast&ncbi_app_package_version=2.11.0&ncbi_app_package_date=Feb++1+2021+02:23:21&ncbi_app_version=2.11.0 +17612/000/0000/PB AF2844CC5C21B841 0001/0001 2024-02-07T01:44:04.726353 i-capture-the-hostname UNK_CLIENT UNK_SESSION proteinkmer_unit_test start /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/proteinkmer/unit_test/proteinkmer_unit_test +17612/000/0000/PB AF2844CC5C21B841 0002/0002 2024-02-07T01:44:04.727663 i-capture-the-hostname UNK_CLIENT UNK_SESSION proteinkmer_unit_test extra ncbi_app_username=pbuilder2&ncbi_app_path=/build/reproducible-path/ncbi-blast%2B-2.11.0%2Bds/c%2B%2B/BUILD/build/algo/blast/proteinkmer/unit_test/proteinkmer_unit_test&ncbi_app_build_date=Feb++1+2021+02:23:21&ncbi_app_package_name=blast&ncbi_app_package_version=2.11.0&ncbi_app_package_date=Feb++1+2021+02:23:21&ncbi_app_version=2.11.0 Running 31 test cases... *** No errors detected @@ -52942,13 +52977,13 @@ Test setup error: *** No errors detected -19327/000/0000/PE FDD14B7F5C1F27E1 0003/0003 2024-02-05T20:49:02.774989 virt32c UNK_CLIENT UNK_SESSION proteinkmer_unit_test stop 200 0.030947923 -real 0.18 -user 0.12 +17612/000/0000/PE AF2844CC5C21B841 0003/0003 2024-02-07T01:44:04.765882 i-capture-the-hostname UNK_CLIENT UNK_SESSION proteinkmer_unit_test stop 200 0.124908924 +real 0.73 +user 0.16 sys 0.06 -Start time : 02/05/2024 20:49:02 -Stop time : 02/05/2024 20:49:02 -Load averages: 6.22 7.20 8.30 +Start time : 02/07/2024 01:44:04 +Stop time : 02/07/2024 01:44:04 +Load averages: 9.36 10.11 10.13 @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@ @@@ EXIT CODE: 200 @@ -52958,8 +52993,8 @@ blastdiag_unit_test ====================================================================== -19399/000/0000/PB FDD14BC75C1F27E1 0001/0001 2024-02-05T20:49:02.928998 virt32c UNK_CLIENT UNK_SESSION blastdiag_unit_test start /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api/blastdiag_unit_test -19399/000/0000/PB FDD14BC75C1F27E1 0002/0002 2024-02-05T20:49:02.930133 virt32c UNK_CLIENT UNK_SESSION blastdiag_unit_test extra ncbi_app_username=pbuilder1&ncbi_app_path=/build/reproducible-path/ncbi-blast%2B-2.11.0%2Bds/c%2B%2B/BUILD/build/algo/blast/unit_tests/api/blastdiag_unit_test&ncbi_app_build_date=Feb++1+2021+02:23:21&ncbi_app_package_name=blast&ncbi_app_package_version=2.11.0&ncbi_app_package_date=Feb++1+2021+02:23:21&ncbi_app_version=2.11.0 +17708/000/0000/PB AF28452C5C21B851 0001/0001 2024-02-07T01:44:05.776473 i-capture-the-hostname UNK_CLIENT UNK_SESSION blastdiag_unit_test start /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api/blastdiag_unit_test +17708/000/0000/PB AF28452C5C21B851 0002/0002 2024-02-07T01:44:05.781839 i-capture-the-hostname UNK_CLIENT UNK_SESSION blastdiag_unit_test extra ncbi_app_username=pbuilder2&ncbi_app_path=/build/reproducible-path/ncbi-blast%2B-2.11.0%2Bds/c%2B%2B/BUILD/build/algo/blast/unit_tests/api/blastdiag_unit_test&ncbi_app_build_date=Feb++1+2021+02:23:21&ncbi_app_package_name=blast&ncbi_app_package_version=2.11.0&ncbi_app_package_date=Feb++1+2021+02:23:21&ncbi_app_version=2.11.0 Running 3 test cases... *** No errors detected @@ -52967,13 +53002,13 @@ Test setup error: *** No errors detected -19399/000/0000/PE FDD14BC75C1F27E1 0003/0003 2024-02-05T20:49:02.937255 virt32c UNK_CLIENT UNK_SESSION blastdiag_unit_test stop 200 0.014034986 -real 0.06 -user 0.04 -sys 0.02 -Start time : 02/05/2024 20:49:02 -Stop time : 02/05/2024 20:49:02 -Load averages: 6.22 7.20 8.30 +17708/000/0000/PE AF28452C5C21B851 0003/0003 2024-02-07T01:44:05.796338 i-capture-the-hostname UNK_CLIENT UNK_SESSION blastdiag_unit_test stop 200 0.029613018 +real 0.28 +user 0.05 +sys 0.04 +Start time : 02/07/2024 01:44:05 +Stop time : 02/07/2024 01:44:05 +Load averages: 9.36 10.11 10.13 @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@ @@@ EXIT CODE: 200 @@ -52983,113 +53018,120 @@ aascan_unit_test ====================================================================== -19471/000/0000/PB FDD14C0F5C1F27F1 0001/0001 2024-02-05T20:49:03.195150 virt32c UNK_CLIENT UNK_SESSION aascan_unit_test start /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api/aascan_unit_test -19471/000/0000/PB FDD14C0F5C1F27F1 0002/0002 2024-02-05T20:49:03.196216 virt32c UNK_CLIENT UNK_SESSION aascan_unit_test extra ncbi_app_username=pbuilder1&ncbi_app_path=/build/reproducible-path/ncbi-blast%2B-2.11.0%2Bds/c%2B%2B/BUILD/build/algo/blast/unit_tests/api/aascan_unit_test&ncbi_app_build_date=Feb++1+2021+02:23:21&ncbi_app_package_name=blast&ncbi_app_package_version=2.11.0&ncbi_app_package_date=Feb++1+2021+02:23:21&ncbi_app_version=2.11.0 +17828/000/0000/PB AF2845A45C21B861 0001/0001 2024-02-07T01:44:06.863437 i-capture-the-hostname UNK_CLIENT UNK_SESSION aascan_unit_test start /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/BUILD/build/algo/blast/unit_tests/api/aascan_unit_test +17828/000/0000/PB AF2845A45C21B861 0002/0002 2024-02-07T01:44:06.868966 i-capture-the-hostname UNK_CLIENT UNK_SESSION aascan_unit_test extra ncbi_app_username=pbuilder2&ncbi_app_path=/build/reproducible-path/ncbi-blast%2B-2.11.0%2Bds/c%2B%2B/BUILD/build/algo/blast/unit_tests/api/aascan_unit_test&ncbi_app_build_date=Feb++1+2021+02:23:21&ncbi_app_package_name=blast&ncbi_app_package_version=2.11.0&ncbi_app_package_date=Feb++1+2021+02:23:21&ncbi_app_version=2.11.0 Running 4 test cases... -19471/000/0001/RB FDD14C0F5C1F27F1 0003/0003 2024-02-05T20:49:03.203093 virt32c UNK_CLIENT UNK_SESSION aascan_unit_test request-start test_name=ScanOffsetTest&ncbi_app_version=2.11.0 -19471/000/0001/R FDD14C0F5C1F27F1 0004/0004 2024-02-05T20:49:03.208744 virt32c UNK_CLIENT UNK_SESSION aascan_unit_test extra ncbi_phid=FDD14C0F5C1F27F10000000000010001 -19471/000/0001/R FDD14C0F5C1F27F1 0005/0005 2024-02-05T20:49:03.208866 virt32c UNK_CLIENT UNK_SESSION aascan_unit_test extra issued_subhit=1 -19471/000/0001/R FDD14C0F5C1F27F1 0006/0006 2024-02-05T20:49:03.213602 virt32c UNK_CLIENT FDD14C0F5C1F27F1_0001SID aascan_unit_test extra issued_subhit=2 -19471/000/0001/R FDD14C0F5C1F27F1 0007/0007 2024-02-05T20:49:03.217282 virt32c UNK_CLIENT FDD14C0F5C1F27F1_0001SID aascan_unit_test Error: CONNECT(302.22) "ncbi_priv.h", line 4175: UNK_FUNC --- SSOCK#1000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -19471/000/0001/R FDD14C0F5C1F27F1 0008/0008 2024-02-05T20:49:03.217406 virt32c UNK_CLIENT FDD14C0F5C1F27F1_0001SID aascan_unit_test Error: CONNECT(303.7) "ncbi_priv.h", line 2078: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=virt32c(127.0.1.1)&platform=armv7l-unknown-linux-gnueabihf] Failed to connect: Unknown -19471/000/0001/R FDD14C0F5C1F27F1 0009/0009 2024-02-05T20:49:03.217502 virt32c UNK_CLIENT FDD14C0F5C1F27F1_0001SID aascan_unit_test Error: CONNECT(304.5) "ncbi_priv.h", line 205: UNK_FUNC --- [ID2] Unable to create connection with network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=virt32c(127.0.1.1)&platform=armv7l-unknown-linux-gnueabihf": Unknown -19471/000/0001/R FDD14C0F5C1F27F1 0010/0010 2024-02-05T20:49:03.217572 virt32c UNK_CLIENT FDD14C0F5C1F27F1_0001SID aascan_unit_test Error: CONNECT(308.5) "ncbi_priv.h", line 102: UNK_FUNC --- [ID2] Service not found -19471/000/0001/R FDD14C0F5C1F27F1 0011/0011 2024-02-05T20:49:03.217637 virt32c UNK_CLIENT FDD14C0F5C1F27F1_0001SID aascan_unit_test Error: CORELIB(315.2) "ncbidiag.hpp", line 85: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown -19471/000/0001/R FDD14C0F5C1F27F1 0012/0012 2024-02-05T20:49:03.218191 virt32c UNK_CLIENT FDD14C0F5C1F27F1_0001SID aascan_unit_test extra issued_subhit=3 -19471/000/0001/R FDD14C0F5C1F27F1 0013/0013 2024-02-05T20:49:03.219164 virt32c UNK_CLIENT FDD14C0F5C1F27F1_0001SID aascan_unit_test extra issued_subhit=4 -19471/000/0001/R FDD14C0F5C1F27F1 0014/0014 2024-02-05T20:49:03.219526 virt32c UNK_CLIENT FDD14C0F5C1F27F1_0001SID aascan_unit_test Error: CONNECT(302.22) "ncbi_priv.h", line 4175: UNK_FUNC --- SSOCK#2000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -19471/000/0001/R FDD14C0F5C1F27F1 0015/0015 2024-02-05T20:49:03.219601 virt32c UNK_CLIENT FDD14C0F5C1F27F1_0001SID aascan_unit_test Error: CONNECT(303.7) "ncbi_priv.h", line 2078: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=virt32c(127.0.1.1)&platform=armv7l-unknown-linux-gnueabihf] Failed to connect: Unknown -19471/000/0001/R FDD14C0F5C1F27F1 0016/0016 2024-02-05T20:49:03.219697 virt32c UNK_CLIENT FDD14C0F5C1F27F1_0001SID aascan_unit_test Error: CONNECT(304.5) "ncbi_priv.h", line 205: UNK_FUNC --- [ID2] Unable to create connection with network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=virt32c(127.0.1.1)&platform=armv7l-unknown-linux-gnueabihf": Unknown -19471/000/0001/R FDD14C0F5C1F27F1 0017/0017 2024-02-05T20:49:03.219758 virt32c UNK_CLIENT FDD14C0F5C1F27F1_0001SID aascan_unit_test Error: CONNECT(308.5) "ncbi_priv.h", line 102: UNK_FUNC --- [ID2] Service not found -19471/000/0001/R FDD14C0F5C1F27F1 0018/0018 2024-02-05T20:49:03.219876 virt32c UNK_CLIENT FDD14C0F5C1F27F1_0001SID aascan_unit_test Error: CORELIB(315.2) "ncbidiag.hpp", line 85: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown -19471/000/0001/R FDD14C0F5C1F27F1 0019/0019 2024-02-05T20:49:03.220149 virt32c UNK_CLIENT FDD14C0F5C1F27F1_0001SID aascan_unit_test extra issued_subhit=5 -19471/000/0001/R FDD14C0F5C1F27F1 0020/0020 2024-02-05T20:49:04.221417 virt32c UNK_CLIENT FDD14C0F5C1F27F1_0001SID aascan_unit_test extra issued_subhit=6 -19471/000/0001/R FDD14C0F5C1F27F1 0021/0021 2024-02-05T20:49:04.221877 virt32c UNK_CLIENT FDD14C0F5C1F27F1_0001SID aascan_unit_test Error: CONNECT(302.22) "ncbi_priv.h", line 4175: UNK_FUNC --- SSOCK#3000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -19471/000/0001/R FDD14C0F5C1F27F1 0022/0022 2024-02-05T20:49:04.221988 virt32c UNK_CLIENT FDD14C0F5C1F27F1_0001SID aascan_unit_test Error: CONNECT(303.7) "ncbi_priv.h", line 2078: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=virt32c(127.0.1.1)&platform=armv7l-unknown-linux-gnueabihf] Failed to connect: Unknown -19471/000/0001/R FDD14C0F5C1F27F1 0023/0023 2024-02-05T20:49:04.222057 virt32c UNK_CLIENT FDD14C0F5C1F27F1_0001SID aascan_unit_test Error: CONNECT(304.5) "ncbi_priv.h", line 205: UNK_FUNC --- [ID2] Unable to create connection with network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=virt32c(127.0.1.1)&platform=armv7l-unknown-linux-gnueabihf": Unknown -19471/000/0001/R FDD14C0F5C1F27F1 0024/0024 2024-02-05T20:49:04.222111 virt32c UNK_CLIENT FDD14C0F5C1F27F1_0001SID aascan_unit_test Error: CONNECT(308.5) "ncbi_priv.h", line 102: UNK_FUNC --- [ID2] Service not found -19471/000/0001/R FDD14C0F5C1F27F1 0025/0025 2024-02-05T20:49:04.222163 virt32c UNK_CLIENT FDD14C0F5C1F27F1_0001SID aascan_unit_test Error: CORELIB(315.2) "ncbidiag.hpp", line 85: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown -19471/000/0001/R FDD14C0F5C1F27F1 0026/0026 2024-02-05T20:49:04.222479 virt32c UNK_CLIENT FDD14C0F5C1F27F1_0001SID aascan_unit_test extra issued_subhit=7 -19471/000/0001/R FDD14C0F5C1F27F1 0027/0027 2024-02-05T20:49:06.723877 virt32c UNK_CLIENT FDD14C0F5C1F27F1_0001SID aascan_unit_test extra issued_subhit=8 -19471/000/0001/R FDD14C0F5C1F27F1 0028/0028 2024-02-05T20:49:06.724395 virt32c UNK_CLIENT FDD14C0F5C1F27F1_0001SID aascan_unit_test Error: CONNECT(302.22) "ncbi_priv.h", line 4175: UNK_FUNC --- SSOCK#4000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -19471/000/0001/R FDD14C0F5C1F27F1 0029/0029 2024-02-05T20:49:06.730529 virt32c UNK_CLIENT FDD14C0F5C1F27F1_0001SID aascan_unit_test Error: CONNECT(303.7) "ncbi_priv.h", line 2078: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=virt32c(127.0.1.1)&platform=armv7l-unknown-linux-gnueabihf] Failed to connect: Unknown -19471/000/0001/R FDD14C0F5C1F27F1 0030/0030 2024-02-05T20:49:06.730619 virt32c UNK_CLIENT FDD14C0F5C1F27F1_0001SID aascan_unit_test Error: CONNECT(304.5) "ncbi_priv.h", line 205: UNK_FUNC --- [ID2] Unable to create connection with network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=virt32c(127.0.1.1)&platform=armv7l-unknown-linux-gnueabihf": Unknown -19471/000/0001/R FDD14C0F5C1F27F1 0031/0031 2024-02-05T20:49:06.730706 virt32c UNK_CLIENT FDD14C0F5C1F27F1_0001SID aascan_unit_test Error: CONNECT(308.5) "ncbi_priv.h", line 102: UNK_FUNC --- [ID2] Service not found -19471/000/0001/R FDD14C0F5C1F27F1 0032/0032 2024-02-05T20:49:06.730760 virt32c UNK_CLIENT FDD14C0F5C1F27F1_0001SID aascan_unit_test Error: CORELIB(315.2) "ncbidiag.hpp", line 85: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown -19471/000/0001/R FDD14C0F5C1F27F1 0033/0033 2024-02-05T20:49:06.731081 virt32c UNK_CLIENT FDD14C0F5C1F27F1_0001SID aascan_unit_test extra issued_subhit=9 -19471/000/0001/R FDD14C0F5C1F27F1 0034/0034 2024-02-05T20:49:11.482368 virt32c UNK_CLIENT FDD14C0F5C1F27F1_0001SID aascan_unit_test extra issued_subhit=10 -19471/000/0001/R FDD14C0F5C1F27F1 0035/0035 2024-02-05T20:49:11.482835 virt32c UNK_CLIENT FDD14C0F5C1F27F1_0001SID aascan_unit_test Error: CONNECT(302.22) "ncbi_priv.h", line 4175: UNK_FUNC --- SSOCK#5000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -19471/000/0001/R FDD14C0F5C1F27F1 0036/0036 2024-02-05T20:49:11.482913 virt32c UNK_CLIENT FDD14C0F5C1F27F1_0001SID aascan_unit_test Error: CONNECT(303.7) "ncbi_priv.h", line 2078: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=virt32c(127.0.1.1)&platform=armv7l-unknown-linux-gnueabihf] Failed to connect: Unknown -19471/000/0001/R FDD14C0F5C1F27F1 0037/0037 2024-02-05T20:49:11.482970 virt32c UNK_CLIENT FDD14C0F5C1F27F1_0001SID aascan_unit_test Error: CONNECT(304.5) "ncbi_priv.h", line 205: UNK_FUNC --- [ID2] Unable to create connection with network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=virt32c(127.0.1.1)&platform=armv7l-unknown-linux-gnueabihf": Unknown -19471/000/0001/R FDD14C0F5C1F27F1 0038/0038 2024-02-05T20:49:11.483020 virt32c UNK_CLIENT FDD14C0F5C1F27F1_0001SID aascan_unit_test Error: CONNECT(308.5) "ncbi_priv.h", line 102: UNK_FUNC --- [ID2] Service not found -19471/000/0001/R FDD14C0F5C1F27F1 0039/0039 2024-02-05T20:49:11.483070 virt32c UNK_CLIENT FDD14C0F5C1F27F1_0001SID aascan_unit_test Error: CORELIB(315.2) "ncbidiag.hpp", line 85: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown -19471/000/0001/R FDD14C0F5C1F27F1 0040/0040 2024-02-05T20:49:11.483712 virt32c UNK_CLIENT FDD14C0F5C1F27F1_0001SID aascan_unit_test extra issued_subhit=11 -19471/000/0001/R FDD14C0F5C1F27F1 0041/0041 2024-02-05T20:49:19.610077 virt32c UNK_CLIENT FDD14C0F5C1F27F1_0001SID aascan_unit_test extra issued_subhit=12 -19471/000/0001/R FDD14C0F5C1F27F1 0042/0042 2024-02-05T20:49:19.610552 virt32c UNK_CLIENT FDD14C0F5C1F27F1_0001SID aascan_unit_test Error: CONNECT(302.22) "ncbi_priv.h", line 4175: UNK_FUNC --- SSOCK#6000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -19471/000/0001/R FDD14C0F5C1F27F1 0043/0043 2024-02-05T20:49:19.610638 virt32c UNK_CLIENT FDD14C0F5C1F27F1_0001SID aascan_unit_test Error: CONNECT(303.7) "ncbi_priv.h", line 2078: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=virt32c(127.0.1.1)&platform=armv7l-unknown-linux-gnueabihf] Failed to connect: Unknown -19471/000/0001/R FDD14C0F5C1F27F1 0044/0044 2024-02-05T20:49:19.610712 virt32c UNK_CLIENT FDD14C0F5C1F27F1_0001SID aascan_unit_test Error: CONNECT(304.5) "ncbi_priv.h", line 205: UNK_FUNC --- [ID2] Unable to create connection with network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=virt32c(127.0.1.1)&platform=armv7l-unknown-linux-gnueabihf": Unknown -19471/000/0001/R FDD14C0F5C1F27F1 0045/0045 2024-02-05T20:49:19.610827 virt32c UNK_CLIENT FDD14C0F5C1F27F1_0001SID aascan_unit_test Error: CONNECT(308.5) "ncbi_priv.h", line 102: UNK_FUNC --- [ID2] Service not found -19471/000/0001/R FDD14C0F5C1F27F1 0046/0046 2024-02-05T20:49:19.610897 virt32c UNK_CLIENT FDD14C0F5C1F27F1_0001SID aascan_unit_test Error: CORELIB(315.2) "ncbidiag.hpp", line 85: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown -19471/000/0001/R FDD14C0F5C1F27F1 0047/0047 2024-02-05T20:49:19.611281 virt32c UNK_CLIENT FDD14C0F5C1F27F1_0001SID aascan_unit_test extra issued_subhit=13 -19471/000/0001/R FDD14C0F5C1F27F1 0048/0048 2024-02-05T20:49:32.800319 virt32c UNK_CLIENT FDD14C0F5C1F27F1_0001SID aascan_unit_test extra issued_subhit=14 -19471/000/0001/R FDD14C0F5C1F27F1 0049/0049 2024-02-05T20:49:32.800836 virt32c UNK_CLIENT FDD14C0F5C1F27F1_0001SID aascan_unit_test Error: CONNECT(302.22) "ncbi_priv.h", line 4175: UNK_FUNC --- SSOCK#7000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -19471/000/0001/R FDD14C0F5C1F27F1 0050/0050 2024-02-05T20:49:32.800928 virt32c UNK_CLIENT FDD14C0F5C1F27F1_0001SID aascan_unit_test Error: CONNECT(303.7) "ncbi_priv.h", line 2078: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=virt32c(127.0.1.1)&platform=armv7l-unknown-linux-gnueabihf] Failed to connect: Unknown -19471/000/0001/R FDD14C0F5C1F27F1 0051/0051 2024-02-05T20:49:32.801009 virt32c UNK_CLIENT FDD14C0F5C1F27F1_0001SID aascan_unit_test Error: CONNECT(304.5) "ncbi_priv.h", line 205: UNK_FUNC --- [ID2] Unable to create connection with network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=virt32c(127.0.1.1)&platform=armv7l-unknown-linux-gnueabihf": Unknown -19471/000/0001/R FDD14C0F5C1F27F1 0052/0052 2024-02-05T20:49:32.801078 virt32c UNK_CLIENT FDD14C0F5C1F27F1_0001SID aascan_unit_test Error: CONNECT(308.5) "ncbi_priv.h", line 102: UNK_FUNC --- [ID2] Service not found -19471/000/0001/R FDD14C0F5C1F27F1 0053/0053 2024-02-05T20:49:32.801144 virt32c UNK_CLIENT FDD14C0F5C1F27F1_0001SID aascan_unit_test Error: CORELIB(315.2) "ncbidiag.hpp", line 85: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown -19471/000/0001/R FDD14C0F5C1F27F1 0054/0054 2024-02-05T20:49:32.801551 virt32c UNK_CLIENT FDD14C0F5C1F27F1_0001SID aascan_unit_test extra issued_subhit=15 -19471/000/0001/R FDD14C0F5C1F27F1 0055/0055 2024-02-05T20:49:53.584317 virt32c UNK_CLIENT FDD14C0F5C1F27F1_0001SID aascan_unit_test extra issued_subhit=16 -19471/000/0001/R FDD14C0F5C1F27F1 0056/0056 2024-02-05T20:49:53.584839 virt32c UNK_CLIENT FDD14C0F5C1F27F1_0001SID aascan_unit_test Error: CONNECT(302.22) "ncbi_priv.h", line 4175: UNK_FUNC --- SSOCK#8000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -19471/000/0001/R FDD14C0F5C1F27F1 0057/0057 2024-02-05T20:49:53.584929 virt32c UNK_CLIENT FDD14C0F5C1F27F1_0001SID aascan_unit_test Error: CONNECT(303.7) "ncbi_priv.h", line 2078: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=virt32c(127.0.1.1)&platform=armv7l-unknown-linux-gnueabihf] Failed to connect: Unknown -19471/000/0001/R FDD14C0F5C1F27F1 0058/0058 2024-02-05T20:49:53.584999 virt32c UNK_CLIENT FDD14C0F5C1F27F1_0001SID aascan_unit_test Error: CONNECT(304.5) "ncbi_priv.h", line 205: UNK_FUNC --- [ID2] Unable to create connection with network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=virt32c(127.0.1.1)&platform=armv7l-unknown-linux-gnueabihf": Unknown -19471/000/0001/R FDD14C0F5C1F27F1 0059/0059 2024-02-05T20:49:53.585068 virt32c UNK_CLIENT FDD14C0F5C1F27F1_0001SID aascan_unit_test Error: CONNECT(308.5) "ncbi_priv.h", line 102: UNK_FUNC --- [ID2] Service not found -19471/000/0001/R FDD14C0F5C1F27F1 0060/0060 2024-02-05T20:49:53.585179 virt32c UNK_CLIENT FDD14C0F5C1F27F1_0001SID aascan_unit_test Error: CORELIB(315.2) "ncbidiag.hpp", line 85: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown -19471/000/0001/R FDD14C0F5C1F27F1 0061/0061 2024-02-05T20:49:53.585577 virt32c UNK_CLIENT FDD14C0F5C1F27F1_0001SID aascan_unit_test extra issued_subhit=17 -19471/000/0001/R FDD14C0F5C1F27F1 0062/0062 2024-02-05T20:50:23.586874 virt32c UNK_CLIENT FDD14C0F5C1F27F1_0001SID aascan_unit_test extra issued_subhit=18 -19471/000/0001/R FDD14C0F5C1F27F1 0063/0063 2024-02-05T20:50:23.587376 virt32c UNK_CLIENT FDD14C0F5C1F27F1_0001SID aascan_unit_test Error: CONNECT(302.22) "ncbi_priv.h", line 4175: UNK_FUNC --- SSOCK#9000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -19471/000/0001/R FDD14C0F5C1F27F1 0064/0064 2024-02-05T20:50:23.587456 virt32c UNK_CLIENT FDD14C0F5C1F27F1_0001SID aascan_unit_test Error: CONNECT(303.7) "ncbi_priv.h", line 2078: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=virt32c(127.0.1.1)&platform=armv7l-unknown-linux-gnueabihf] Failed to connect: Unknown -19471/000/0001/R FDD14C0F5C1F27F1 0065/0065 2024-02-05T20:50:23.587513 virt32c UNK_CLIENT FDD14C0F5C1F27F1_0001SID aascan_unit_test Error: CONNECT(304.5) "ncbi_priv.h", line 205: UNK_FUNC --- [ID2] Unable to create connection with network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=virt32c(127.0.1.1)&platform=armv7l-unknown-linux-gnueabihf": Unknown -19471/000/0001/R FDD14C0F5C1F27F1 0066/0066 2024-02-05T20:50:23.587560 virt32c UNK_CLIENT FDD14C0F5C1F27F1_0001SID aascan_unit_test Error: CONNECT(308.5) "ncbi_priv.h", line 102: UNK_FUNC --- [ID2] Service not found -19471/000/0001/R FDD14C0F5C1F27F1 0067/0067 2024-02-05T20:50:23.587608 virt32c UNK_CLIENT FDD14C0F5C1F27F1_0001SID aascan_unit_test Error: CORELIB(315.2) "ncbidiag.hpp", line 85: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown -19471/000/0001/R FDD14C0F5C1F27F1 0068/0068 2024-02-05T20:50:23.588082 virt32c UNK_CLIENT FDD14C0F5C1F27F1_0001SID aascan_unit_test extra issued_subhit=19 -19471/000/0001/R FDD14C0F5C1F27F1 0069/0069 2024-02-05T20:50:53.589338 virt32c UNK_CLIENT FDD14C0F5C1F27F1_0001SID aascan_unit_test extra issued_subhit=20 -19471/000/0001/R FDD14C0F5C1F27F1 0070/0070 2024-02-05T20:50:53.589794 virt32c UNK_CLIENT FDD14C0F5C1F27F1_0001SID aascan_unit_test Error: CONNECT(302.22) "ncbi_priv.h", line 4175: UNK_FUNC --- SSOCK#10000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -19471/000/0001/R FDD14C0F5C1F27F1 0071/0071 2024-02-05T20:50:53.589872 virt32c UNK_CLIENT FDD14C0F5C1F27F1_0001SID aascan_unit_test Error: CONNECT(303.7) "ncbi_priv.h", line 2078: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=virt32c(127.0.1.1)&platform=armv7l-unknown-linux-gnueabihf] Failed to connect: Unknown -19471/000/0001/R FDD14C0F5C1F27F1 0072/0072 2024-02-05T20:50:53.589961 virt32c UNK_CLIENT FDD14C0F5C1F27F1_0001SID aascan_unit_test Error: CONNECT(304.5) "ncbi_priv.h", line 205: UNK_FUNC --- [ID2] Unable to create connection with network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=virt32c(127.0.1.1)&platform=armv7l-unknown-linux-gnueabihf": Unknown -19471/000/0001/R FDD14C0F5C1F27F1 0073/0073 2024-02-05T20:50:53.590020 virt32c UNK_CLIENT FDD14C0F5C1F27F1_0001SID aascan_unit_test Error: CONNECT(308.5) "ncbi_priv.h", line 102: UNK_FUNC --- [ID2] Service not found -19471/000/0001/R FDD14C0F5C1F27F1 0074/0074 2024-02-05T20:50:53.590072 virt32c UNK_CLIENT FDD14C0F5C1F27F1_0001SID aascan_unit_test Error: CORELIB(315.2) "ncbidiag.hpp", line 85: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown -19471/000/0001/RE FDD14C0F5C1F27F1 0075/0075 2024-02-05T20:50:53.590809 virt32c UNK_CLIENT FDD14C0F5C1F27F1_0001SID aascan_unit_test request-stop 500 110.387719869 0 0 +17828/000/0001/RB AF2845A45C21B861 0003/0003 2024-02-07T01:44:06.885702 i-capture-the-hostname UNK_CLIENT UNK_SESSION aascan_unit_test request-start test_name=ScanOffsetTest&ncbi_app_version=2.11.0 +17828/000/0001/R AF2845A45C21B861 0004/0004 2024-02-07T01:44:06.930376 i-capture-the-hostname UNK_CLIENT UNK_SESSION aascan_unit_test extra ncbi_phid=AF2845A45C21B8610000000000010001 +17828/000/0001/R AF2845A45C21B861 0005/0005 2024-02-07T01:44:06.930575 i-capture-the-hostname UNK_CLIENT UNK_SESSION aascan_unit_test extra issued_subhit=1 +17828/000/0001/R AF2845A45C21B861 0006/0006 2024-02-07T01:44:06.941407 i-capture-the-hostname UNK_CLIENT AF2845A45C21B861_0001SID aascan_unit_test extra issued_subhit=2 +17828/000/0001/R AF2845A45C21B861 0007/0007 2024-02-07T01:44:06.954099 i-capture-the-hostname UNK_CLIENT AF2845A45C21B861_0001SID aascan_unit_test Error: CONNECT(302.22) "ncbi_priv.h", line 4175: UNK_FUNC --- SSOCK#1000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") +17828/000/0001/R AF2845A45C21B861 0008/0008 2024-02-07T01:44:06.957147 i-capture-the-hostname UNK_CLIENT AF2845A45C21B861_0001SID aascan_unit_test Error: CONNECT(303.7) "ncbi_priv.h", line 2078: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=i-capture-the-hostname(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown +17828/000/0001/R AF2845A45C21B861 0009/0009 2024-02-07T01:44:06.957270 i-capture-the-hostname UNK_CLIENT AF2845A45C21B861_0001SID aascan_unit_test Error: CONNECT(304.5) "ncbi_priv.h", line 205: UNK_FUNC --- [ID2] Unable to create connection with network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=i-capture-the-hostname(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown +17828/000/0001/R AF2845A45C21B861 0010/0010 2024-02-07T01:44:06.957349 i-capture-the-hostname UNK_CLIENT AF2845A45C21B861_0001SID aascan_unit_test Error: CONNECT(308.5) "ncbi_priv.h", line 102: UNK_FUNC --- [ID2] Service not found +17828/000/0001/R AF2845A45C21B861 0011/0011 2024-02-07T01:44:06.957423 i-capture-the-hostname UNK_CLIENT AF2845A45C21B861_0001SID aascan_unit_test Error: CORELIB(315.2) "ncbidiag.hpp", line 85: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown +17828/000/0001/R AF2845A45C21B861 0012/0012 2024-02-07T01:44:06.957978 i-capture-the-hostname UNK_CLIENT AF2845A45C21B861_0001SID aascan_unit_test extra issued_subhit=3 +17828/000/0001/R AF2845A45C21B861 0013/0013 2024-02-07T01:44:06.959051 i-capture-the-hostname UNK_CLIENT AF2845A45C21B861_0001SID aascan_unit_test extra issued_subhit=4 +17828/000/0001/R AF2845A45C21B861 0014/0014 2024-02-07T01:44:06.964944 i-capture-the-hostname UNK_CLIENT AF2845A45C21B861_0001SID aascan_unit_test Error: CONNECT(302.22) "ncbi_priv.h", line 4175: UNK_FUNC --- SSOCK#2000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") +17828/000/0001/R AF2845A45C21B861 0015/0015 2024-02-07T01:44:06.965097 i-capture-the-hostname UNK_CLIENT AF2845A45C21B861_0001SID aascan_unit_test Error: CONNECT(303.7) "ncbi_priv.h", line 2078: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=i-capture-the-hostname(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown +17828/000/0001/R AF2845A45C21B861 0016/0016 2024-02-07T01:44:06.965240 i-capture-the-hostname UNK_CLIENT AF2845A45C21B861_0001SID aascan_unit_test Error: CONNECT(304.5) "ncbi_priv.h", line 205: UNK_FUNC --- [ID2] Unable to create connection with network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=i-capture-the-hostname(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown +17828/000/0001/R AF2845A45C21B861 0017/0017 2024-02-07T01:44:06.965318 i-capture-the-hostname UNK_CLIENT AF2845A45C21B861_0001SID aascan_unit_test Error: CONNECT(308.5) "ncbi_priv.h", line 102: UNK_FUNC --- [ID2] Service not found +17828/000/0001/R AF2845A45C21B861 0018/0018 2024-02-07T01:44:06.965388 i-capture-the-hostname UNK_CLIENT AF2845A45C21B861_0001SID aascan_unit_test Error: CORELIB(315.2) "ncbidiag.hpp", line 85: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown +17828/000/0001/R AF2845A45C21B861 0019/0019 2024-02-07T01:44:06.965763 i-capture-the-hostname UNK_CLIENT AF2845A45C21B861_0001SID aascan_unit_test extra issued_subhit=5 +17828/000/0001/R AF2845A45C21B861 0020/0020 2024-02-07T01:44:07.969866 i-capture-the-hostname UNK_CLIENT AF2845A45C21B861_0001SID aascan_unit_test extra issued_subhit=6 +17828/000/0001/R AF2845A45C21B861 0021/0021 2024-02-07T01:44:07.970480 i-capture-the-hostname UNK_CLIENT AF2845A45C21B861_0001SID aascan_unit_test Error: CONNECT(302.22) "ncbi_priv.h", line 4175: UNK_FUNC --- SSOCK#3000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") +17828/000/0001/R AF2845A45C21B861 0022/0022 2024-02-07T01:44:07.970584 i-capture-the-hostname UNK_CLIENT AF2845A45C21B861_0001SID aascan_unit_test Error: CONNECT(303.7) "ncbi_priv.h", line 2078: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=i-capture-the-hostname(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown +17828/000/0001/R AF2845A45C21B861 0023/0023 2024-02-07T01:44:07.970666 i-capture-the-hostname UNK_CLIENT AF2845A45C21B861_0001SID aascan_unit_test Error: CONNECT(304.5) "ncbi_priv.h", line 205: UNK_FUNC --- [ID2] Unable to create connection with network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=i-capture-the-hostname(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown +17828/000/0001/R AF2845A45C21B861 0024/0024 2024-02-07T01:44:07.970741 i-capture-the-hostname UNK_CLIENT AF2845A45C21B861_0001SID aascan_unit_test Error: CONNECT(308.5) "ncbi_priv.h", line 102: UNK_FUNC --- [ID2] Service not found +17828/000/0001/R AF2845A45C21B861 0025/0025 2024-02-07T01:44:07.970809 i-capture-the-hostname UNK_CLIENT AF2845A45C21B861_0001SID aascan_unit_test Error: CORELIB(315.2) "ncbidiag.hpp", line 85: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown +17828/000/0001/R AF2845A45C21B861 0026/0026 2024-02-07T01:44:07.971184 i-capture-the-hostname UNK_CLIENT AF2845A45C21B861_0001SID aascan_unit_test extra issued_subhit=7 +17828/000/0001/R AF2845A45C21B861 0027/0027 2024-02-07T01:44:10.473716 i-capture-the-hostname UNK_CLIENT AF2845A45C21B861_0001SID aascan_unit_test extra issued_subhit=8 +17828/000/0001/R AF2845A45C21B861 0028/0028 2024-02-07T01:44:10.474261 i-capture-the-hostname UNK_CLIENT AF2845A45C21B861_0001SID aascan_unit_test Error: CONNECT(302.22) "ncbi_priv.h", line 4175: UNK_FUNC --- SSOCK#4000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") +17828/000/0001/R AF2845A45C21B861 0029/0029 2024-02-07T01:44:10.474349 i-capture-the-hostname UNK_CLIENT AF2845A45C21B861_0001SID aascan_unit_test Error: CONNECT(303.7) "ncbi_priv.h", line 2078: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=i-capture-the-hostname(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown +17828/000/0001/R AF2845A45C21B861 0030/0030 2024-02-07T01:44:10.474463 i-capture-the-hostname UNK_CLIENT AF2845A45C21B861_0001SID aascan_unit_test Error: CONNECT(304.5) "ncbi_priv.h", line 205: UNK_FUNC --- [ID2] Unable to create connection with network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=i-capture-the-hostname(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown +17828/000/0001/R AF2845A45C21B861 0031/0031 2024-02-07T01:44:10.474526 i-capture-the-hostname UNK_CLIENT AF2845A45C21B861_0001SID aascan_unit_test Error: CONNECT(308.5) "ncbi_priv.h", line 102: UNK_FUNC --- [ID2] Service not found +17828/000/0001/R AF2845A45C21B861 0032/0032 2024-02-07T01:44:10.474588 i-capture-the-hostname UNK_CLIENT AF2845A45C21B861_0001SID aascan_unit_test Error: CORELIB(315.2) "ncbidiag.hpp", line 85: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown +17828/000/0001/R AF2845A45C21B861 0033/0033 2024-02-07T01:44:10.474914 i-capture-the-hostname UNK_CLIENT AF2845A45C21B861_0001SID aascan_unit_test extra issued_subhit=9 +17828/000/0001/R AF2845A45C21B861 0034/0034 2024-02-07T01:44:15.229854 i-capture-the-hostname UNK_CLIENT AF2845A45C21B861_0001SID aascan_unit_test extra issued_subhit=10 +17828/000/0001/R AF2845A45C21B861 0035/0035 2024-02-07T01:44:15.230453 i-capture-the-hostname UNK_CLIENT AF2845A45C21B861_0001SID aascan_unit_test Error: CONNECT(302.22) "ncbi_priv.h", line 4175: UNK_FUNC --- SSOCK#5000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") +17828/000/0001/R AF2845A45C21B861 0036/0036 2024-02-07T01:44:15.230556 i-capture-the-hostname UNK_CLIENT AF2845A45C21B861_0001SID aascan_unit_test Error: CONNECT(303.7) "ncbi_priv.h", line 2078: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=i-capture-the-hostname(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown +17828/000/0001/R AF2845A45C21B861 0037/0037 2024-02-07T01:44:15.230636 i-capture-the-hostname UNK_CLIENT AF2845A45C21B861_0001SID aascan_unit_test Error: CONNECT(304.5) "ncbi_priv.h", line 205: UNK_FUNC --- [ID2] Unable to create connection with network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=i-capture-the-hostname(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown +17828/000/0001/R AF2845A45C21B861 0038/0038 2024-02-07T01:44:15.230711 i-capture-the-hostname UNK_CLIENT AF2845A45C21B861_0001SID aascan_unit_test Error: CONNECT(308.5) "ncbi_priv.h", line 102: UNK_FUNC --- [ID2] Service not found +17828/000/0001/R AF2845A45C21B861 0039/0039 2024-02-07T01:44:15.230781 i-capture-the-hostname UNK_CLIENT AF2845A45C21B861_0001SID aascan_unit_test Error: CORELIB(315.2) "ncbidiag.hpp", line 85: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown +17828/000/0001/R AF2845A45C21B861 0040/0040 2024-02-07T01:44:15.237214 i-capture-the-hostname UNK_CLIENT AF2845A45C21B861_0001SID aascan_unit_test extra issued_subhit=11 +17828/000/0001/R AF2845A45C21B861 0041/0041 2024-02-07T01:44:23.365969 i-capture-the-hostname UNK_CLIENT AF2845A45C21B861_0001SID aascan_unit_test extra issued_subhit=12 +17828/000/0001/R AF2845A45C21B861 0042/0042 2024-02-07T01:44:23.366645 i-capture-the-hostname UNK_CLIENT AF2845A45C21B861_0001SID aascan_unit_test Error: CONNECT(302.22) "ncbi_priv.h", line 4175: UNK_FUNC --- SSOCK#6000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") +17828/000/0001/R AF2845A45C21B861 0043/0043 2024-02-07T01:44:23.366749 i-capture-the-hostname UNK_CLIENT AF2845A45C21B861_0001SID aascan_unit_test Error: CONNECT(303.7) "ncbi_priv.h", line 2078: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=i-capture-the-hostname(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown +17828/000/0001/R AF2845A45C21B861 0044/0044 2024-02-07T01:44:23.366890 i-capture-the-hostname UNK_CLIENT AF2845A45C21B861_0001SID aascan_unit_test Error: CONNECT(304.5) "ncbi_priv.h", line 205: UNK_FUNC --- [ID2] Unable to create connection with network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=i-capture-the-hostname(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown +17828/000/0001/R AF2845A45C21B861 0045/0045 2024-02-07T01:44:23.366980 i-capture-the-hostname UNK_CLIENT AF2845A45C21B861_0001SID aascan_unit_test Error: CONNECT(308.5) "ncbi_priv.h", line 102: UNK_FUNC --- [ID2] Service not found +17828/000/0001/R AF2845A45C21B861 0046/0046 2024-02-07T01:44:23.367059 i-capture-the-hostname UNK_CLIENT AF2845A45C21B861_0001SID aascan_unit_test Error: CORELIB(315.2) "ncbidiag.hpp", line 85: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown +17828/000/0001/R AF2845A45C21B861 0047/0047 2024-02-07T01:44:23.367510 i-capture-the-hostname UNK_CLIENT AF2845A45C21B861_0001SID aascan_unit_test extra issued_subhit=13 +17828/000/0001/R AF2845A45C21B861 0048/0048 2024-02-07T01:44:36.556333 i-capture-the-hostname UNK_CLIENT AF2845A45C21B861_0001SID aascan_unit_test extra issued_subhit=14 +17828/000/0001/R AF2845A45C21B861 0049/0049 2024-02-07T01:44:36.556920 i-capture-the-hostname UNK_CLIENT AF2845A45C21B861_0001SID aascan_unit_test Error: CONNECT(302.22) "ncbi_priv.h", line 4175: UNK_FUNC --- SSOCK#7000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") +17828/000/0001/R AF2845A45C21B861 0050/0050 2024-02-07T01:44:36.557011 i-capture-the-hostname UNK_CLIENT AF2845A45C21B861_0001SID aascan_unit_test Error: CONNECT(303.7) "ncbi_priv.h", line 2078: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=i-capture-the-hostname(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown +17828/000/0001/R AF2845A45C21B861 0051/0051 2024-02-07T01:44:36.557069 i-capture-the-hostname UNK_CLIENT AF2845A45C21B861_0001SID aascan_unit_test Error: CONNECT(304.5) "ncbi_priv.h", line 205: UNK_FUNC --- [ID2] Unable to create connection with network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=i-capture-the-hostname(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown +17828/000/0001/R AF2845A45C21B861 0052/0052 2024-02-07T01:44:36.557118 i-capture-the-hostname UNK_CLIENT AF2845A45C21B861_0001SID aascan_unit_test Error: CONNECT(308.5) "ncbi_priv.h", line 102: UNK_FUNC --- [ID2] Service not found +17828/000/0001/R AF2845A45C21B861 0053/0053 2024-02-07T01:44:36.557165 i-capture-the-hostname UNK_CLIENT AF2845A45C21B861_0001SID aascan_unit_test Error: CORELIB(315.2) "ncbidiag.hpp", line 85: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown +17828/000/0001/R AF2845A45C21B861 0054/0054 2024-02-07T01:44:36.557517 i-capture-the-hostname UNK_CLIENT AF2845A45C21B861_0001SID aascan_unit_test extra issued_subhit=15 +17828/000/0001/R AF2845A45C21B861 0055/0055 2024-02-07T01:44:57.341807 i-capture-the-hostname UNK_CLIENT AF2845A45C21B861_0001SID aascan_unit_test extra issued_subhit=16 +17828/000/0001/R AF2845A45C21B861 0056/0056 2024-02-07T01:44:57.342397 i-capture-the-hostname UNK_CLIENT AF2845A45C21B861_0001SID aascan_unit_test Error: CONNECT(302.22) "ncbi_priv.h", line 4175: UNK_FUNC --- SSOCK#8000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") +17828/000/0001/R AF2845A45C21B861 0057/0057 2024-02-07T01:44:57.342496 i-capture-the-hostname UNK_CLIENT AF2845A45C21B861_0001SID aascan_unit_test Error: CONNECT(303.7) "ncbi_priv.h", line 2078: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=i-capture-the-hostname(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown +17828/000/0001/R AF2845A45C21B861 0058/0058 2024-02-07T01:44:57.342610 i-capture-the-hostname UNK_CLIENT AF2845A45C21B861_0001SID aascan_unit_test Error: CONNECT(304.5) "ncbi_priv.h", line 205: UNK_FUNC --- [ID2] Unable to create connection with network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=i-capture-the-hostname(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown +17828/000/0001/R AF2845A45C21B861 0059/0059 2024-02-07T01:44:57.342682 i-capture-the-hostname UNK_CLIENT AF2845A45C21B861_0001SID aascan_unit_test Error: CONNECT(308.5) "ncbi_priv.h", line 102: UNK_FUNC --- [ID2] Service not found +17828/000/0001/R AF2845A45C21B861 0060/0060 2024-02-07T01:44:57.342746 i-capture-the-hostname UNK_CLIENT AF2845A45C21B861_0001SID aascan_unit_test Error: CORELIB(315.2) "ncbidiag.hpp", line 85: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown +17828/000/0001/R AF2845A45C21B861 0061/0061 2024-02-07T01:44:57.343144 i-capture-the-hostname UNK_CLIENT AF2845A45C21B861_0001SID aascan_unit_test extra issued_subhit=17 +17828/000/0001/R AF2845A45C21B861 0062/0062 2024-02-07T01:45:27.345718 i-capture-the-hostname UNK_CLIENT AF2845A45C21B861_0001SID aascan_unit_test extra issued_subhit=18 +17828/000/0001/R AF2845A45C21B861 0063/0063 2024-02-07T01:45:27.346300 i-capture-the-hostname UNK_CLIENT AF2845A45C21B861_0001SID aascan_unit_test Error: CONNECT(302.22) "ncbi_priv.h", line 4175: UNK_FUNC --- SSOCK#9000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") +17828/000/0001/R AF2845A45C21B861 0064/0064 2024-02-07T01:45:27.346389 i-capture-the-hostname UNK_CLIENT AF2845A45C21B861_0001SID aascan_unit_test Error: CONNECT(303.7) "ncbi_priv.h", line 2078: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=i-capture-the-hostname(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown +17828/000/0001/R AF2845A45C21B861 0065/0065 2024-02-07T01:45:27.346450 i-capture-the-hostname UNK_CLIENT AF2845A45C21B861_0001SID aascan_unit_test Error: CONNECT(304.5) "ncbi_priv.h", line 205: UNK_FUNC --- [ID2] Unable to create connection with network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=i-capture-the-hostname(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown +17828/000/0001/R AF2845A45C21B861 0066/0066 2024-02-07T01:45:27.346500 i-capture-the-hostname UNK_CLIENT AF2845A45C21B861_0001SID aascan_unit_test Error: CONNECT(308.5) "ncbi_priv.h", line 102: UNK_FUNC --- [ID2] Service not found +17828/000/0001/R AF2845A45C21B861 0067/0067 2024-02-07T01:45:27.346550 i-capture-the-hostname UNK_CLIENT AF2845A45C21B861_0001SID aascan_unit_test Error: CORELIB(315.2) "ncbidiag.hpp", line 85: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown +17828/000/0001/R AF2845A45C21B861 0068/0068 2024-02-07T01:45:27.346925 i-capture-the-hostname UNK_CLIENT AF2845A45C21B861_0001SID aascan_unit_test extra issued_subhit=19 +17828/000/0001/R AF2845A45C21B861 0069/0069 2024-02-07T01:45:57.348305 i-capture-the-hostname UNK_CLIENT AF2845A45C21B861_0001SID aascan_unit_test extra issued_subhit=20 +17828/000/0001/R AF2845A45C21B861 0070/0070 2024-02-07T01:45:57.348939 i-capture-the-hostname UNK_CLIENT AF2845A45C21B861_0001SID aascan_unit_test Error: CONNECT(302.22) "ncbi_priv.h", line 4175: UNK_FUNC --- SSOCK#10000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") +17828/000/0001/R AF2845A45C21B861 0071/0071 2024-02-07T01:45:57.349046 i-capture-the-hostname UNK_CLIENT AF2845A45C21B861_0001SID aascan_unit_test Error: CONNECT(303.7) "ncbi_priv.h", line 2078: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=i-capture-the-hostname(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown +17828/000/0001/R AF2845A45C21B861 0072/0072 2024-02-07T01:45:57.349179 i-capture-the-hostname UNK_CLIENT AF2845A45C21B861_0001SID aascan_unit_test Error: CONNECT(304.5) "ncbi_priv.h", line 205: UNK_FUNC --- [ID2] Unable to create connection with network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=i-capture-the-hostname(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown +17828/000/0001/R AF2845A45C21B861 0073/0073 2024-02-07T01:45:57.349264 i-capture-the-hostname UNK_CLIENT AF2845A45C21B861_0001SID aascan_unit_test Error: CONNECT(308.5) "ncbi_priv.h", line 102: UNK_FUNC --- [ID2] Service not found +17828/000/0001/R AF2845A45C21B861 0074/0074 2024-02-07T01:45:57.349337 i-capture-the-hostname UNK_CLIENT AF2845A45C21B861_0001SID aascan_unit_test Error: CORELIB(315.2) "ncbidiag.hpp", line 85: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown +17828/000/0001/RE AF2845A45C21B861 0075/0075 2024-02-07T01:45:57.357017 i-capture-the-hostname UNK_CLIENT AF2845A45C21B861_0001SID aascan_unit_test request-stop 500 110.471306085 0 0 unknown location(0): fatal error: in "aascan/ScanOffsetTest": ncbi::objects::CLoaderException: NCBI C++ Exception: Error: CORELIB(CLoaderException::eConnectionFailed) "c++/include/corelib/ncbidiag.hpp", line 254: ncbi::objects::CId2Reader::x_ConnectAtSlot() --- cannot open connection: ID2 Error: CORELIB(CLoaderException::eConnectionFailed) "c++/include/corelib/ncbidiag.hpp", line 1828: ncbi::objects::CId2ReaderBase::x_SendID2Packet() --- failed to send request: NULL  /build/reproducible-path/ncbi-blast+-2.11.0+ds/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp(251): last checkpoint: "ScanOffsetTest" fixture entry. -19471/000/0002/RB FDD14C0F5C1F27F1 0078/0078 2024-02-05T20:50:53.592087 virt32c UNK_CLIENT UNK_SESSION aascan_unit_test request-start test_name=ScanMaxHitsTest&ncbi_app_version=2.11.0 -19471/000/0002/R FDD14C0F5C1F27F1 0079/0079 2024-02-05T20:50:53.592292 virt32c UNK_CLIENT UNK_SESSION aascan_unit_test extra ncbi_phid=FDD14C0F5C1F27F10000000000020002 -19471/000/0002/R FDD14C0F5C1F27F1 0080/0080 2024-02-05T20:50:53.592344 virt32c UNK_CLIENT UNK_SESSION aascan_unit_test extra issued_subhit=1 -19471/000/0002/R FDD14C0F5C1F27F1 0081/0081 2024-02-05T20:51:23.593603 virt32c UNK_CLIENT FDD14C0F5C1F30B1_0002SID aascan_unit_test extra issued_subhit=2 -19471/000/0002/R FDD14C0F5C1F27F1 0082/0082 2024-02-05T20:51:23.594109 virt32c UNK_CLIENT FDD14C0F5C1F30B1_0002SID aascan_unit_test Error: CONNECT(302.22) "ncbi_priv.h", line 4175: UNK_FUNC --- SSOCK#11000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -19471/000/0002/R FDD14C0F5C1F27F1 0083/0083 2024-02-05T20:51:23.594188 virt32c UNK_CLIENT FDD14C0F5C1F30B1_0002SID aascan_unit_test Error: CONNECT(303.7) "ncbi_priv.h", line 2078: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=virt32c(127.0.1.1)&platform=armv7l-unknown-linux-gnueabihf] Failed to connect: Unknown -19471/000/0002/R FDD14C0F5C1F27F1 0084/0084 2024-02-05T20:51:23.594242 virt32c UNK_CLIENT FDD14C0F5C1F30B1_0002SID aascan_unit_test Error: CONNECT(304.5) "ncbi_priv.h", line 205: UNK_FUNC --- [ID2] Unable to create connection with network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=virt32c(127.0.1.1)&platform=armv7l-unknown-linux-gnueabihf": Unknown -19471/000/0002/R FDD14C0F5C1F27F1 0085/0085 2024-02-05T20:51:23.594291 virt32c UNK_CLIENT FDD14C0F5C1F30B1_0002SID aascan_unit_test Error: CONNECT(308.5) "ncbi_priv.h", line 102: UNK_FUNC --- [ID2] Service not found -19471/000/0002/R FDD14C0F5C1F27F1 0086/0086 2024-02-05T20:51:23.594336 virt32c UNK_CLIENT FDD14C0F5C1F30B1_0002SID aascan_unit_test Error: CORELIB(315.2) "ncbidiag.hpp", line 85: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown -19471/000/0002/R FDD14C0F5C1F27F1 0087/0087 2024-02-05T20:51:23.594639 virt32c UNK_CLIENT FDD14C0F5C1F30B1_0002SID aascan_unit_test extra issued_subhit=3 -19471/000/0002/R FDD14C0F5C1F27F1 0088/0088 2024-02-05T20:51:53.595973 virt32c UNK_CLIENT FDD14C0F5C1F30B1_0002SID aascan_unit_test extra issued_subhit=4 -19471/000/0002/R FDD14C0F5C1F27F1 0089/0089 2024-02-05T20:51:53.596438 virt32c UNK_CLIENT FDD14C0F5C1F30B1_0002SID aascan_unit_test Error: CONNECT(302.22) "ncbi_priv.h", line 4175: UNK_FUNC --- SSOCK#12000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -19471/000/0002/R FDD14C0F5C1F27F1 0090/0090 2024-02-05T20:51:53.596555 virt32c UNK_CLIENT FDD14C0F5C1F30B1_0002SID aascan_unit_test Error: CONNECT(303.7) "ncbi_priv.h", line 2078: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=virt32c(127.0.1.1)&platform=armv7l-unknown-linux-gnueabihf] Failed to connect: Unknown -19471/000/0002/R FDD14C0F5C1F27F1 0091/0091 2024-02-05T20:51:53.596613 virt32c UNK_CLIENT FDD14C0F5C1F30B1_0002SID aascan_unit_test Error: CONNECT(304.5) "ncbi_priv.h", line 205: UNK_FUNC --- [ID2] Unable to create connection with network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=virt32c(127.0.1.1)&platform=armv7l-unknown-linux-gnueabihf": Unknown -19471/000/0002/R FDD14C0F5C1F27F1 0092/0092 2024-02-05T20:51:53.596660 virt32c UNK_CLIENT FDD14C0F5C1F30B1_0002SID aascan_unit_test Error: CONNECT(308.5) "ncbi_priv.h", line 102: UNK_FUNC --- [ID2] Service not found -19471/000/0002/R FDD14C0F5C1F27F1 0093/0093 2024-02-05T20:51:53.596706 virt32c UNK_CLIENT FDD14C0F5C1F30B1_0002SID aascan_unit_test Error: CORELIB(315.2) "ncbidiag.hpp", line 85: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown -19471/000/0002/R FDD14C0F5C1F27F1 0094/0094 2024-02-05T20:51:53.597006 virt32c UNK_CLIENT FDD14C0F5C1F30B1_0002SID aascan_unit_test extra issued_subhit=5 +17828/000/0002/RB AF2845A45C21B861 0078/0078 2024-02-07T01:45:57.358574 i-capture-the-hostname UNK_CLIENT UNK_SESSION aascan_unit_test request-start test_name=ScanMaxHitsTest&ncbi_app_version=2.11.0 +17828/000/0002/R AF2845A45C21B861 0079/0079 2024-02-07T01:45:57.358821 i-capture-the-hostname UNK_CLIENT UNK_SESSION aascan_unit_test extra ncbi_phid=AF2845A45C21B8610000000000020002 +17828/000/0002/R AF2845A45C21B861 0080/0080 2024-02-07T01:45:57.358896 i-capture-the-hostname UNK_CLIENT UNK_SESSION aascan_unit_test extra issued_subhit=1 +17828/000/0002/R AF2845A45C21B861 0081/0081 2024-02-07T01:46:27.360394 i-capture-the-hostname UNK_CLIENT AF2845A45C21C131_0002SID aascan_unit_test extra issued_subhit=2 +17828/000/0002/R AF2845A45C21B861 0082/0082 2024-02-07T01:46:27.360918 i-capture-the-hostname UNK_CLIENT AF2845A45C21C131_0002SID aascan_unit_test Error: CONNECT(302.22) "ncbi_priv.h", line 4175: UNK_FUNC --- SSOCK#11000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") +17828/000/0002/R AF2845A45C21B861 0083/0083 2024-02-07T01:46:27.361012 i-capture-the-hostname UNK_CLIENT AF2845A45C21C131_0002SID aascan_unit_test Error: CONNECT(303.7) "ncbi_priv.h", line 2078: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=i-capture-the-hostname(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown +17828/000/0002/R AF2845A45C21B861 0084/0084 2024-02-07T01:46:27.361078 i-capture-the-hostname UNK_CLIENT AF2845A45C21C131_0002SID aascan_unit_test Error: CONNECT(304.5) "ncbi_priv.h", line 205: UNK_FUNC --- [ID2] Unable to create connection with network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=i-capture-the-hostname(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown +17828/000/0002/R AF2845A45C21B861 0085/0085 2024-02-07T01:46:27.361150 i-capture-the-hostname UNK_CLIENT AF2845A45C21C131_0002SID aascan_unit_test Error: CONNECT(308.5) "ncbi_priv.h", line 102: UNK_FUNC --- [ID2] Service not found +17828/000/0002/R AF2845A45C21B861 0086/0086 2024-02-07T01:46:27.361223 i-capture-the-hostname UNK_CLIENT AF2845A45C21C131_0002SID aascan_unit_test Error: CORELIB(315.2) "ncbidiag.hpp", line 85: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown +17828/000/0002/R AF2845A45C21B861 0087/0087 2024-02-07T01:46:27.361608 i-capture-the-hostname UNK_CLIENT AF2845A45C21C131_0002SID aascan_unit_test extra issued_subhit=3 +17828/000/0002/R AF2845A45C21B861 0088/0088 2024-02-07T01:46:57.364316 i-capture-the-hostname UNK_CLIENT AF2845A45C21C131_0002SID aascan_unit_test extra issued_subhit=4 +17828/000/0002/R AF2845A45C21B861 0089/0089 2024-02-07T01:46:57.364921 i-capture-the-hostname UNK_CLIENT AF2845A45C21C131_0002SID aascan_unit_test Error: CONNECT(302.22) "ncbi_priv.h", line 4175: UNK_FUNC --- SSOCK#12000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") +17828/000/0002/R AF2845A45C21B861 0090/0090 2024-02-07T01:46:57.365023 i-capture-the-hostname UNK_CLIENT AF2845A45C21C131_0002SID aascan_unit_test Error: CONNECT(303.7) "ncbi_priv.h", line 2078: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=i-capture-the-hostname(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown +17828/000/0002/R AF2845A45C21B861 0091/0091 2024-02-07T01:46:57.365100 i-capture-the-hostname UNK_CLIENT AF2845A45C21C131_0002SID aascan_unit_test Error: CONNECT(304.5) "ncbi_priv.h", line 205: UNK_FUNC --- [ID2] Unable to create connection with network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=i-capture-the-hostname(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown +17828/000/0002/R AF2845A45C21B861 0092/0092 2024-02-07T01:46:57.365165 i-capture-the-hostname UNK_CLIENT AF2845A45C21C131_0002SID aascan_unit_test Error: CONNECT(308.5) "ncbi_priv.h", line 102: UNK_FUNC --- [ID2] Service not found +17828/000/0002/R AF2845A45C21B861 0093/0093 2024-02-07T01:46:57.365222 i-capture-the-hostname UNK_CLIENT AF2845A45C21C131_0002SID aascan_unit_test Error: CORELIB(315.2) "ncbidiag.hpp", line 85: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown +17828/000/0002/R AF2845A45C21B861 0094/0094 2024-02-07T01:46:57.365580 i-capture-the-hostname UNK_CLIENT AF2845A45C21C131_0002SID aascan_unit_test extra issued_subhit=5 +17828/000/0002/R AF2845A45C21B861 0095/0095 2024-02-07T01:47:27.368561 i-capture-the-hostname UNK_CLIENT AF2845A45C21C131_0002SID aascan_unit_test extra issued_subhit=6 +17828/000/0002/R AF2845A45C21B861 0096/0096 2024-02-07T01:47:27.369274 i-capture-the-hostname UNK_CLIENT AF2845A45C21C131_0002SID aascan_unit_test Error: CONNECT(302.22) "ncbi_priv.h", line 4175: UNK_FUNC --- SSOCK#13000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") +17828/000/0002/R AF2845A45C21B861 0097/0097 2024-02-07T01:47:27.369373 i-capture-the-hostname UNK_CLIENT AF2845A45C21C131_0002SID aascan_unit_test Error: CONNECT(303.7) "ncbi_priv.h", line 2078: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=i-capture-the-hostname(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown +17828/000/0002/R AF2845A45C21B861 0098/0098 2024-02-07T01:47:27.369450 i-capture-the-hostname UNK_CLIENT AF2845A45C21C131_0002SID aascan_unit_test Error: CONNECT(304.5) "ncbi_priv.h", line 205: UNK_FUNC --- [ID2] Unable to create connection with network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=i-capture-the-hostname(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown +17828/000/0002/R AF2845A45C21B861 0099/0099 2024-02-07T01:47:27.369516 i-capture-the-hostname UNK_CLIENT AF2845A45C21C131_0002SID aascan_unit_test Error: CONNECT(308.5) "ncbi_priv.h", line 102: UNK_FUNC --- [ID2] Service not found +17828/000/0002/R AF2845A45C21B861 0100/0100 2024-02-07T01:47:27.369586 i-capture-the-hostname UNK_CLIENT AF2845A45C21C131_0002SID aascan_unit_test Error: CORELIB(315.2) "ncbidiag.hpp", line 85: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown +17828/000/0002/R AF2845A45C21B861 0101/0101 2024-02-07T01:47:27.370006 i-capture-the-hostname UNK_CLIENT AF2845A45C21C131_0002SID aascan_unit_test extra issued_subhit=7 Maximum execution time of 200 second(s) is exceeded -real 200.22 -user 0.25 +real 201.76 +user 0.39 sys 0.13 -Start time : 02/05/2024 20:49:03 -Stop time : 02/05/2024 20:52:23 -Load averages: 4.08 5.64 7.46 +Start time : 02/07/2024 01:44:06 +Stop time : 02/07/2024 01:47:28 +Load averages: 9.34 9.51 9.86 @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@ @@@ EXIT CODE: 143 @@ -53295,40 +53337,40 @@ dh_strip -a -O--sourcedirectory=c\+\+ dh_makeshlibs -a -O--sourcedirectory=c\+\+ dh_shlibdeps -a -O--sourcedirectory=c\+\+ -dpkg-shlibdeps: warning: debian/ncbi-blast+/usr/bin/blastdbcmd contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin -dpkg-shlibdeps: warning: debian/ncbi-blast+/usr/bin/blastdb_path contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin -dpkg-shlibdeps: warning: debian/ncbi-blast+/usr/bin/makeblastdb contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin -dpkg-shlibdeps: warning: debian/ncbi-blast+/usr/bin/blastx contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin -dpkg-shlibdeps: warning: debian/ncbi-blast+/usr/bin/makembindex contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/ncbi-blast+/usr/bin/rpsblast+ contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/ncbi-blast+/usr/bin/blastn contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin -dpkg-shlibdeps: warning: debian/ncbi-blast+/usr/bin/blastdbcheck contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin -dpkg-shlibdeps: warning: debian/ncbi-blast+/usr/bin/windowmasker contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/ncbi-blast+/usr/bin/blastdbcp contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/ncbi-blast+/usr/bin/blast_report contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin -dpkg-shlibdeps: warning: debian/ncbi-blast+/usr/bin/tblastx contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin -dpkg-shlibdeps: warning: debian/ncbi-blast+/usr/bin/blastdb_convert contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin -dpkg-shlibdeps: warning: debian/ncbi-blast+/usr/bin/psiblast contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/ncbi-blast+/usr/bin/makembindex contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/ncbi-blast+/usr/bin/seedtop+ contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/ncbi-blast+/usr/bin/convert2blastmask contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/ncbi-blast+/usr/bin/tblastn contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/ncbi-blast+/usr/bin/gene_info_reader contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin -dpkg-shlibdeps: warning: debian/ncbi-blast+/usr/bin/blastdbcp contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin -dpkg-shlibdeps: warning: debian/ncbi-blast+/usr/bin/blastp contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/ncbi-blast+/usr/bin/blast_formatter contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin -dpkg-shlibdeps: warning: debian/ncbi-blast+/usr/bin/convert2blastmask contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin -dpkg-shlibdeps: warning: debian/ncbi-blast+/usr/bin/seqdb_perf contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/ncbi-blast+/usr/bin/blastdb_aliastool contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/ncbi-blast+/usr/bin/blastdbcmd contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/ncbi-blast+/usr/bin/dustmasker contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin -dpkg-shlibdeps: warning: debian/ncbi-blast+/usr/bin/deltablast contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/ncbi-blast+/usr/bin/makeprofiledb contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/ncbi-blast+/usr/bin/seqdb_perf contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/ncbi-blast+/usr/bin/segmasker contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin -dpkg-shlibdeps: warning: debian/ncbi-blast+/usr/bin/rpsblast+ contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/ncbi-blast+/usr/bin/windowmasker contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/ncbi-blast+/usr/bin/rpstblastn contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin -dpkg-shlibdeps: warning: debian/ncbi-blast+/usr/bin/blastdb_aliastool contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin -dpkg-shlibdeps: warning: debian/ncbi-blast+/usr/bin/makeprofiledb contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/ncbi-blast+/usr/bin/blastdbcheck contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/ncbi-blast+/usr/bin/blastdb_convert contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/ncbi-blast+/usr/bin/blastdb_path contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/ncbi-blast+/usr/bin/deltablast contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/ncbi-blast+/usr/bin/psiblast contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/ncbi-blast+/usr/bin/tblastx contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/ncbi-blast+/usr/bin/makeblastdb contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/ncbi-blast+/usr/bin/blastp contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/ncbi-blast+/usr/bin/blastx contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dh_installdeb -O--sourcedirectory=c\+\+ dh_gencontrol -O--sourcedirectory=c\+\+ dh_md5sums -O--sourcedirectory=c\+\+ dh_builddeb -O--sourcedirectory=c\+\+ -dpkg-deb: building package 'ncbi-blast+' in '../ncbi-blast+_2.11.0+ds-1_armhf.deb'. dpkg-deb: building package 'ncbi-blast+-dbgsym' in '../ncbi-blast+-dbgsym_2.11.0+ds-1_armhf.deb'. dpkg-deb: building package 'ncbi-blast+-legacy' in '../ncbi-blast+-legacy_2.11.0+ds-1_all.deb'. +dpkg-deb: building package 'ncbi-blast+' in '../ncbi-blast+_2.11.0+ds-1_armhf.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../ncbi-blast+_2.11.0+ds-1_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -53337,12 +53379,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/23747/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/23747/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/29881 and its subdirectories -I: Current time: Mon Feb 5 21:04:41 -12 2024 -I: pbuilder-time-stamp: 1707210281 +I: removing directory /srv/workspace/pbuilder/23747 and its subdirectories +I: Current time: Wed Feb 7 02:13:53 +14 2024 +I: pbuilder-time-stamp: 1707221633