Diff of the two buildlogs: -- --- b1/build.log 2021-09-26 01:16:08.362353466 +0000 +++ b2/build.log 2021-09-26 01:23:42.554089516 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sat Sep 25 13:13:20 -12 2021 -I: pbuilder-time-stamp: 1632618800 +I: Current time: Sun Sep 26 15:16:22 +14 2021 +I: pbuilder-time-stamp: 1632618982 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration @@ -16,8 +16,8 @@ I: copying [./ngmlr_0.2.7+dfsg-4.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' -gpgv: keyblock resource '/tmp/dpkg-verify-sig.6rcp4sRm/trustedkeys.kbx': General error -gpgv: Signature made Sun Dec 6 01:12:41 2020 -12 +gpgv: keyblock resource '/tmp/dpkg-verify-sig.eYPr8Wwi/trustedkeys.kbx': General error +gpgv: Signature made Mon Dec 7 03:12:41 2020 +14 gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "npatra974@gmail.com" gpgv: Can't check signature: No public key @@ -32,135 +32,169 @@ dpkg-source: info: applying fix-type-incompatibilities.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/29124/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/16690/tmp/hooks/D01_modify_environment starting +debug: Running on virt32a. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/16690/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/16690/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=3' - DISTRIBUTION='' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.1.4(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=4' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='7deae81088ec473a89b3cf01c0a46e83' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='29124' - PS1='# ' - PS2='> ' + INVOCATION_ID=918fac737feb4fb98b958a5023c0e8ea + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=16690 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.Ymfp5FpUUp/pbuilderrc_LOwY --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.Ymfp5FpUUp/b1 --logfile b1/build.log ngmlr_0.2.7+dfsg-4.dsc' - SUDO_GID='114' - SUDO_UID='110' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:8000/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.Ymfp5FpUUp/pbuilderrc_51Xj --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.Ymfp5FpUUp/b2 --logfile b2/build.log ngmlr_0.2.7+dfsg-4.dsc' + SUDO_GID=113 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:8000/ I: uname -a - Linux jtx1b 5.10.0-8-arm64 #1 SMP Debian 5.10.46-5 (2021-09-23) aarch64 GNU/Linux + Linux i-capture-the-hostname 5.10.0-8-armmp-lpae #1 SMP Debian 5.10.46-5 (2021-09-23) armv7l GNU/Linux I: ls -l /bin total 3580 - -rwxr-xr-x 1 root root 816764 Aug 4 08:25 bash - -rwxr-xr-x 3 root root 26052 Jul 20 2020 bunzip2 - -rwxr-xr-x 3 root root 26052 Jul 20 2020 bzcat - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep - -rwxr-xr-x 3 root root 26052 Jul 20 2020 bzip2 - -rwxr-xr-x 1 root root 9636 Jul 20 2020 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore - -rwxr-xr-x 1 root root 26668 Sep 22 2020 cat - -rwxr-xr-x 1 root root 43104 Sep 22 2020 chgrp - -rwxr-xr-x 1 root root 38984 Sep 22 2020 chmod - -rwxr-xr-x 1 root root 43112 Sep 22 2020 chown - -rwxr-xr-x 1 root root 92616 Sep 22 2020 cp - -rwxr-xr-x 1 root root 75524 Dec 10 2020 dash - -rwxr-xr-x 1 root root 75880 Sep 22 2020 date - -rwxr-xr-x 1 root root 55436 Sep 22 2020 dd - -rwxr-xr-x 1 root root 59912 Sep 22 2020 df - -rwxr-xr-x 1 root root 96764 Sep 22 2020 dir - -rwxr-xr-x 1 root root 55012 Jul 28 07:09 dmesg - lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname - -rwxr-xr-x 1 root root 22508 Sep 22 2020 echo - -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep - -rwxr-xr-x 1 root root 22496 Sep 22 2020 false - -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep - -rwxr-xr-x 1 root root 47492 Jul 28 07:09 findmnt - -rwsr-xr-x 1 root root 26076 Feb 26 2021 fusermount - -rwxr-xr-x 1 root root 124508 Nov 9 2020 grep - -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip - -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe - -rwxr-xr-x 1 root root 64212 Mar 2 2021 gzip - -rwxr-xr-x 1 root root 13784 Nov 6 2019 hostname - -rwxr-xr-x 1 root root 43180 Sep 22 2020 ln - -rwxr-xr-x 1 root root 35068 Feb 7 2020 login - -rwxr-xr-x 1 root root 96764 Sep 22 2020 ls - -rwxr-xr-x 1 root root 99940 Jul 28 07:09 lsblk - -rwxr-xr-x 1 root root 51408 Sep 22 2020 mkdir - -rwxr-xr-x 1 root root 43184 Sep 22 2020 mknod - -rwxr-xr-x 1 root root 30780 Sep 22 2020 mktemp - -rwxr-xr-x 1 root root 34408 Jul 28 07:09 more - -rwsr-xr-x 1 root root 34400 Jul 28 07:09 mount - -rwxr-xr-x 1 root root 9824 Jul 28 07:09 mountpoint - -rwxr-xr-x 1 root root 88524 Sep 22 2020 mv - lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 26652 Sep 22 2020 pwd - lrwxrwxrwx 1 root root 4 Aug 4 08:25 rbash -> bash - -rwxr-xr-x 1 root root 30740 Sep 22 2020 readlink - -rwxr-xr-x 1 root root 43104 Sep 22 2020 rm - -rwxr-xr-x 1 root root 30732 Sep 22 2020 rmdir - -rwxr-xr-x 1 root root 14144 Sep 27 2020 run-parts - -rwxr-xr-x 1 root root 76012 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Sep 20 21:26 sh -> dash - -rwxr-xr-x 1 root root 22532 Sep 22 2020 sleep - -rwxr-xr-x 1 root root 55360 Sep 22 2020 stty - -rwsr-xr-x 1 root root 46704 Jul 28 07:09 su - -rwxr-xr-x 1 root root 22532 Sep 22 2020 sync - -rwxr-xr-x 1 root root 340872 Feb 16 2021 tar - -rwxr-xr-x 1 root root 9808 Sep 27 2020 tempfile - -rwxr-xr-x 1 root root 67696 Sep 22 2020 touch - -rwxr-xr-x 1 root root 22496 Sep 22 2020 true - -rwxr-xr-x 1 root root 9636 Feb 26 2021 ulockmgr_server - -rwsr-xr-x 1 root root 22108 Jul 28 07:09 umount - -rwxr-xr-x 1 root root 22520 Sep 22 2020 uname - -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress - -rwxr-xr-x 1 root root 96764 Sep 22 2020 vdir - -rwxr-xr-x 1 root root 38512 Jul 28 07:09 wdctl - lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat - -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp - -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff - -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep - -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep - -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce - -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep - -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless - -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore - -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew -I: user script /srv/workspace/pbuilder/29124/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 816764 Aug 5 10:25 bash + -rwxr-xr-x 3 root root 26052 Jul 21 2020 bunzip2 + -rwxr-xr-x 3 root root 26052 Jul 21 2020 bzcat + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep + -rwxr-xr-x 3 root root 26052 Jul 21 2020 bzip2 + -rwxr-xr-x 1 root root 9636 Jul 21 2020 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore + -rwxr-xr-x 1 root root 26668 Sep 23 2020 cat + -rwxr-xr-x 1 root root 43104 Sep 23 2020 chgrp + -rwxr-xr-x 1 root root 38984 Sep 23 2020 chmod + -rwxr-xr-x 1 root root 43112 Sep 23 2020 chown + -rwxr-xr-x 1 root root 92616 Sep 23 2020 cp + -rwxr-xr-x 1 root root 75524 Dec 11 2020 dash + -rwxr-xr-x 1 root root 75880 Sep 23 2020 date + -rwxr-xr-x 1 root root 55436 Sep 23 2020 dd + -rwxr-xr-x 1 root root 59912 Sep 23 2020 df + -rwxr-xr-x 1 root root 96764 Sep 23 2020 dir + -rwxr-xr-x 1 root root 55012 Jul 29 09:09 dmesg + lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname + -rwxr-xr-x 1 root root 22508 Sep 23 2020 echo + -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep + -rwxr-xr-x 1 root root 22496 Sep 23 2020 false + -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep + -rwxr-xr-x 1 root root 47492 Jul 29 09:09 findmnt + -rwsr-xr-x 1 root root 26076 Feb 27 2021 fusermount + -rwxr-xr-x 1 root root 124508 Nov 10 2020 grep + -rwxr-xr-x 2 root root 2346 Mar 3 2021 gunzip + -rwxr-xr-x 1 root root 6376 Mar 3 2021 gzexe + -rwxr-xr-x 1 root root 64212 Mar 3 2021 gzip + -rwxr-xr-x 1 root root 13784 Nov 8 2019 hostname + -rwxr-xr-x 1 root root 43180 Sep 23 2020 ln + -rwxr-xr-x 1 root root 35068 Feb 8 2020 login + -rwxr-xr-x 1 root root 96764 Sep 23 2020 ls + -rwxr-xr-x 1 root root 99940 Jul 29 09:09 lsblk + -rwxr-xr-x 1 root root 51408 Sep 23 2020 mkdir + -rwxr-xr-x 1 root root 43184 Sep 23 2020 mknod + -rwxr-xr-x 1 root root 30780 Sep 23 2020 mktemp + -rwxr-xr-x 1 root root 34408 Jul 29 09:09 more + -rwsr-xr-x 1 root root 34400 Jul 29 09:09 mount + -rwxr-xr-x 1 root root 9824 Jul 29 09:09 mountpoint + -rwxr-xr-x 1 root root 88524 Sep 23 2020 mv + lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 19 05:38 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 26652 Sep 23 2020 pwd + lrwxrwxrwx 1 root root 4 Aug 5 10:25 rbash -> bash + -rwxr-xr-x 1 root root 30740 Sep 23 2020 readlink + -rwxr-xr-x 1 root root 43104 Sep 23 2020 rm + -rwxr-xr-x 1 root root 30732 Sep 23 2020 rmdir + -rwxr-xr-x 1 root root 14144 Sep 28 2020 run-parts + -rwxr-xr-x 1 root root 76012 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Sep 26 15:17 sh -> bash + lrwxrwxrwx 1 root root 4 Sep 21 23:25 sh.distrib -> dash + -rwxr-xr-x 1 root root 22532 Sep 23 2020 sleep + -rwxr-xr-x 1 root root 55360 Sep 23 2020 stty + -rwsr-xr-x 1 root root 46704 Jul 29 09:09 su + -rwxr-xr-x 1 root root 22532 Sep 23 2020 sync + -rwxr-xr-x 1 root root 340872 Feb 17 2021 tar + -rwxr-xr-x 1 root root 9808 Sep 28 2020 tempfile + -rwxr-xr-x 1 root root 67696 Sep 23 2020 touch + -rwxr-xr-x 1 root root 22496 Sep 23 2020 true + -rwxr-xr-x 1 root root 9636 Feb 27 2021 ulockmgr_server + -rwsr-xr-x 1 root root 22108 Jul 29 09:09 umount + -rwxr-xr-x 1 root root 22520 Sep 23 2020 uname + -rwxr-xr-x 2 root root 2346 Mar 3 2021 uncompress + -rwxr-xr-x 1 root root 96764 Sep 23 2020 vdir + -rwxr-xr-x 1 root root 38512 Jul 29 09:09 wdctl + lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Mar 3 2021 zcat + -rwxr-xr-x 1 root root 1678 Mar 3 2021 zcmp + -rwxr-xr-x 1 root root 5880 Mar 3 2021 zdiff + -rwxr-xr-x 1 root root 29 Mar 3 2021 zegrep + -rwxr-xr-x 1 root root 29 Mar 3 2021 zfgrep + -rwxr-xr-x 1 root root 2081 Mar 3 2021 zforce + -rwxr-xr-x 1 root root 7585 Mar 3 2021 zgrep + -rwxr-xr-x 1 root root 2206 Mar 3 2021 zless + -rwxr-xr-x 1 root root 1842 Mar 3 2021 zmore + -rwxr-xr-x 1 root root 4553 Mar 3 2021 znew +I: user script /srv/workspace/pbuilder/16690/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -270,7 +304,7 @@ Get: 60 http://deb.debian.org/debian bullseye/main armhf libssw0 armhf 1.1-13 [21.2 kB] Get: 61 http://deb.debian.org/debian bullseye/main armhf libssw-dev armhf 1.1-13 [24.3 kB] Get: 62 http://deb.debian.org/debian bullseye/main armhf libtclap-dev armhf 1.2.3-1 [143 kB] -Fetched 31.4 MB in 5s (5808 kB/s) +Fetched 31.4 MB in 4s (8643 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19398 files and directories currently installed.) @@ -534,7 +568,8 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/ngmlr-0.2.7+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../ngmlr_0.2.7+dfsg-4_source.changes +hostname: Name or service not known +I: Running cd /build/ngmlr-0.2.7+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../ngmlr_0.2.7+dfsg-4_source.changes dpkg-buildpackage: info: source package ngmlr dpkg-buildpackage: info: source version 0.2.7+dfsg-4 dpkg-buildpackage: info: source distribution unstable @@ -590,42 +625,42 @@ -- Build files have been written to: /build/ngmlr-0.2.7+dfsg/obj-arm-linux-gnueabihf dh_auto_build -O--buildsystem=cmake - cd obj-arm-linux-gnueabihf && make -j3 "INSTALL=install --strip-program=true" VERBOSE=1 -make[1]: Entering directory '/build/ngmlr-0.2.7+dfsg/obj-arm-linux-gnueabihf' + cd obj-arm-linux-gnueabihf && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1 +make[1]: ingresso nella directory «/build/ngmlr-0.2.7+dfsg/obj-arm-linux-gnueabihf» /usr/bin/cmake -S/build/ngmlr-0.2.7+dfsg -B/build/ngmlr-0.2.7+dfsg/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/ngmlr-0.2.7+dfsg/obj-arm-linux-gnueabihf/CMakeFiles /build/ngmlr-0.2.7+dfsg/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all -make[2]: Entering directory '/build/ngmlr-0.2.7+dfsg/obj-arm-linux-gnueabihf' +make[2]: ingresso nella directory «/build/ngmlr-0.2.7+dfsg/obj-arm-linux-gnueabihf» make -f src/CMakeFiles/recompile_always.dir/build.make src/CMakeFiles/recompile_always.dir/depend -make -f src/CMakeFiles/ngmlr.dir/build.make src/CMakeFiles/ngmlr.dir/depend -make[3]: Entering directory '/build/ngmlr-0.2.7+dfsg/obj-arm-linux-gnueabihf' +make[3]: ingresso nella directory «/build/ngmlr-0.2.7+dfsg/obj-arm-linux-gnueabihf» cd /build/ngmlr-0.2.7+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/ngmlr-0.2.7+dfsg /build/ngmlr-0.2.7+dfsg/src /build/ngmlr-0.2.7+dfsg/obj-arm-linux-gnueabihf /build/ngmlr-0.2.7+dfsg/obj-arm-linux-gnueabihf/src /build/ngmlr-0.2.7+dfsg/obj-arm-linux-gnueabihf/src/CMakeFiles/recompile_always.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/ngmlr-0.2.7+dfsg/obj-arm-linux-gnueabihf' +make -f src/CMakeFiles/ngmlr.dir/build.make src/CMakeFiles/ngmlr.dir/depend +make[3]: ingresso nella directory «/build/ngmlr-0.2.7+dfsg/obj-arm-linux-gnueabihf» cd /build/ngmlr-0.2.7+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/ngmlr-0.2.7+dfsg /build/ngmlr-0.2.7+dfsg/src /build/ngmlr-0.2.7+dfsg/obj-arm-linux-gnueabihf /build/ngmlr-0.2.7+dfsg/obj-arm-linux-gnueabihf/src /build/ngmlr-0.2.7+dfsg/obj-arm-linux-gnueabihf/src/CMakeFiles/ngmlr.dir/DependInfo.cmake --color= -Dependee "/build/ngmlr-0.2.7+dfsg/obj-arm-linux-gnueabihf/src/CMakeFiles/recompile_always.dir/DependInfo.cmake" is newer than depender "/build/ngmlr-0.2.7+dfsg/obj-arm-linux-gnueabihf/src/CMakeFiles/recompile_always.dir/depend.internal". -Dependee "/build/ngmlr-0.2.7+dfsg/obj-arm-linux-gnueabihf/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/ngmlr-0.2.7+dfsg/obj-arm-linux-gnueabihf/src/CMakeFiles/recompile_always.dir/depend.internal". Dependee "/build/ngmlr-0.2.7+dfsg/obj-arm-linux-gnueabihf/src/CMakeFiles/ngmlr.dir/DependInfo.cmake" is newer than depender "/build/ngmlr-0.2.7+dfsg/obj-arm-linux-gnueabihf/src/CMakeFiles/ngmlr.dir/depend.internal". Dependee "/build/ngmlr-0.2.7+dfsg/obj-arm-linux-gnueabihf/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/ngmlr-0.2.7+dfsg/obj-arm-linux-gnueabihf/src/CMakeFiles/ngmlr.dir/depend.internal". +Dependee "/build/ngmlr-0.2.7+dfsg/obj-arm-linux-gnueabihf/src/CMakeFiles/recompile_always.dir/DependInfo.cmake" is newer than depender "/build/ngmlr-0.2.7+dfsg/obj-arm-linux-gnueabihf/src/CMakeFiles/recompile_always.dir/depend.internal". +Dependee "/build/ngmlr-0.2.7+dfsg/obj-arm-linux-gnueabihf/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/ngmlr-0.2.7+dfsg/obj-arm-linux-gnueabihf/src/CMakeFiles/recompile_always.dir/depend.internal". Scanning dependencies of target recompile_always -make[3]: Leaving directory '/build/ngmlr-0.2.7+dfsg/obj-arm-linux-gnueabihf' +make[3]: uscita dalla directory «/build/ngmlr-0.2.7+dfsg/obj-arm-linux-gnueabihf» make -f src/CMakeFiles/recompile_always.dir/build.make src/CMakeFiles/recompile_always.dir/build -make[3]: Entering directory '/build/ngmlr-0.2.7+dfsg/obj-arm-linux-gnueabihf' +make[3]: ingresso nella directory «/build/ngmlr-0.2.7+dfsg/obj-arm-linux-gnueabihf» cd /build/ngmlr-0.2.7+dfsg/obj-arm-linux-gnueabihf/src && touch /build/ngmlr-0.2.7+dfsg/src/main.cpp -make[3]: Leaving directory '/build/ngmlr-0.2.7+dfsg/obj-arm-linux-gnueabihf' -[ 0%] Built target recompile_always +make[3]: uscita dalla directory «/build/ngmlr-0.2.7+dfsg/obj-arm-linux-gnueabihf» Scanning dependencies of target ngmlr -make[3]: Leaving directory '/build/ngmlr-0.2.7+dfsg/obj-arm-linux-gnueabihf' +make[3]: uscita dalla directory «/build/ngmlr-0.2.7+dfsg/obj-arm-linux-gnueabihf» make -f src/CMakeFiles/ngmlr.dir/build.make src/CMakeFiles/ngmlr.dir/build -make[3]: Entering directory '/build/ngmlr-0.2.7+dfsg/obj-arm-linux-gnueabihf' -[ 12%] Building CXX object src/CMakeFiles/ngmlr.dir/AlignmentMatrixFast.cpp.o +make[3]: ingresso nella directory «/build/ngmlr-0.2.7+dfsg/obj-arm-linux-gnueabihf» +[ 0%] Built target recompile_always +[ 4%] Building CXX object src/CMakeFiles/ngmlr.dir/CS.cpp.o +[ 8%] Building CXX object src/CMakeFiles/ngmlr.dir/AlignmentMatrixFast.cpp.o +cd /build/ngmlr-0.2.7+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+dfsg/src/../lib -g -O2 -fdebug-prefix-map=/build/ngmlr-0.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ngmlr.dir/CS.cpp.o -c /build/ngmlr-0.2.7+dfsg/src/CS.cpp [ 12%] Building CXX object src/CMakeFiles/ngmlr.dir/AlignmentMatrix.cpp.o -[ 12%] Building CXX object src/CMakeFiles/ngmlr.dir/ArgParser.cpp.o -cd /build/ngmlr-0.2.7+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+dfsg/src/../lib -g -O2 -fdebug-prefix-map=/build/ngmlr-0.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ngmlr.dir/AlignmentMatrix.cpp.o -c /build/ngmlr-0.2.7+dfsg/src/AlignmentMatrix.cpp cd /build/ngmlr-0.2.7+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+dfsg/src/../lib -g -O2 -fdebug-prefix-map=/build/ngmlr-0.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ngmlr.dir/AlignmentMatrixFast.cpp.o -c /build/ngmlr-0.2.7+dfsg/src/AlignmentMatrixFast.cpp +[ 16%] Building CXX object src/CMakeFiles/ngmlr.dir/ArgParser.cpp.o +cd /build/ngmlr-0.2.7+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+dfsg/src/../lib -g -O2 -fdebug-prefix-map=/build/ngmlr-0.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ngmlr.dir/AlignmentMatrix.cpp.o -c /build/ngmlr-0.2.7+dfsg/src/AlignmentMatrix.cpp cd /build/ngmlr-0.2.7+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+dfsg/src/../lib -g -O2 -fdebug-prefix-map=/build/ngmlr-0.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ngmlr.dir/ArgParser.cpp.o -c /build/ngmlr-0.2.7+dfsg/src/ArgParser.cpp -[ 20%] Building CXX object src/CMakeFiles/ngmlr.dir/CS.cpp.o [ 20%] Building CXX object src/CMakeFiles/ngmlr.dir/CSstatic.cpp.o -cd /build/ngmlr-0.2.7+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+dfsg/src/../lib -g -O2 -fdebug-prefix-map=/build/ngmlr-0.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ngmlr.dir/CS.cpp.o -c /build/ngmlr-0.2.7+dfsg/src/CS.cpp cd /build/ngmlr-0.2.7+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+dfsg/src/../lib -g -O2 -fdebug-prefix-map=/build/ngmlr-0.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ngmlr.dir/CSstatic.cpp.o -c /build/ngmlr-0.2.7+dfsg/src/CSstatic.cpp [ 24%] Building CXX object src/CMakeFiles/ngmlr.dir/ConvexAlign.cpp.o cd /build/ngmlr-0.2.7+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+dfsg/src/../lib -g -O2 -fdebug-prefix-map=/build/ngmlr-0.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ngmlr.dir/ConvexAlign.cpp.o -c /build/ngmlr-0.2.7+dfsg/src/ConvexAlign.cpp @@ -635,10 +670,14 @@ cd /build/ngmlr-0.2.7+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+dfsg/src/../lib -g -O2 -fdebug-prefix-map=/build/ngmlr-0.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ngmlr.dir/LinearRegression.cpp.o -c /build/ngmlr-0.2.7+dfsg/src/LinearRegression.cpp [ 36%] Building CXX object src/CMakeFiles/ngmlr.dir/Logging.cpp.o cd /build/ngmlr-0.2.7+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+dfsg/src/../lib -g -O2 -fdebug-prefix-map=/build/ngmlr-0.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ngmlr.dir/Logging.cpp.o -c /build/ngmlr-0.2.7+dfsg/src/Logging.cpp +[ 40%] Building CXX object src/CMakeFiles/ngmlr.dir/MappedRead.cpp.o +cd /build/ngmlr-0.2.7+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+dfsg/src/../lib -g -O2 -fdebug-prefix-map=/build/ngmlr-0.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ngmlr.dir/MappedRead.cpp.o -c /build/ngmlr-0.2.7+dfsg/src/MappedRead.cpp /build/ngmlr-0.2.7+dfsg/src/Logging.cpp: In function ‘void __Log::LogToConsole(bool, int, const char*, const char*, ...)’: /build/ngmlr-0.2.7+dfsg/src/Logging.cpp:100:2: warning: second parameter of ‘va_start’ not last named argument [-Wvarargs] 100 | va_start(args, count); | ^~~~~~~~ +[ 44%] Building CXX object src/CMakeFiles/ngmlr.dir/main.cpp.o +cd /build/ngmlr-0.2.7+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+dfsg/src/../lib -g -O2 -fdebug-prefix-map=/build/ngmlr-0.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ngmlr.dir/main.cpp.o -c /build/ngmlr-0.2.7+dfsg/src/main.cpp /build/ngmlr-0.2.7+dfsg/src/Logging.cpp: In function ‘std::string add_timestamp(std::string)’: /build/ngmlr-0.2.7+dfsg/src/Logging.cpp:125:27: warning: ‘%02i’ directive writing between 2 and 11 bytes into a region of size between 8 and 15 [-Wformat-overflow=] 125 | sprintf(timestamp, "%4i-%02i-%02i_%02i-%02i-%02i", tm->tm_year + 1900, tm->tm_mon + 1, tm->tm_mday, tm->tm_hour, tm->tm_min, @@ -653,10 +692,6 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 40%] Building CXX object src/CMakeFiles/ngmlr.dir/MappedRead.cpp.o -cd /build/ngmlr-0.2.7+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+dfsg/src/../lib -g -O2 -fdebug-prefix-map=/build/ngmlr-0.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ngmlr.dir/MappedRead.cpp.o -c /build/ngmlr-0.2.7+dfsg/src/MappedRead.cpp -[ 44%] Building CXX object src/CMakeFiles/ngmlr.dir/main.cpp.o -cd /build/ngmlr-0.2.7+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+dfsg/src/../lib -g -O2 -fdebug-prefix-map=/build/ngmlr-0.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ngmlr.dir/main.cpp.o -c /build/ngmlr-0.2.7+dfsg/src/main.cpp /build/ngmlr-0.2.7+dfsg/src/main.cpp:56:146: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 56 | Log.Message("ngmlr %s%s (build: %s %s, start: %s)", version.str().c_str(), cDebug ? " debug" : "", __DATE__, __TIME__, currentDateTime().c_str()); | ^ @@ -685,6 +720,15 @@ cd /build/ngmlr-0.2.7+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+dfsg/src/../lib -g -O2 -fdebug-prefix-map=/build/ngmlr-0.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ngmlr.dir/SAMWriter.cpp.o -c /build/ngmlr-0.2.7+dfsg/src/SAMWriter.cpp [ 76%] Building CXX object src/CMakeFiles/ngmlr.dir/SequenceProvider.cpp.o cd /build/ngmlr-0.2.7+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+dfsg/src/../lib -g -O2 -fdebug-prefix-map=/build/ngmlr-0.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ngmlr.dir/SequenceProvider.cpp.o -c /build/ngmlr-0.2.7+dfsg/src/SequenceProvider.cpp +[ 80%] Building CXX object src/CMakeFiles/ngmlr.dir/OutputReadBuffer.cpp.o +cd /build/ngmlr-0.2.7+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+dfsg/src/../lib -g -O2 -fdebug-prefix-map=/build/ngmlr-0.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ngmlr.dir/OutputReadBuffer.cpp.o -c /build/ngmlr-0.2.7+dfsg/src/OutputReadBuffer.cpp +/build/ngmlr-0.2.7+dfsg/src/OutputReadBuffer.cpp: In destructor ‘OutputReadBuffer::~OutputReadBuffer()’: +/build/ngmlr-0.2.7+dfsg/src/OutputReadBuffer.cpp:17:3: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] + 17 | throw "Elements left in buffer!"; + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/ngmlr-0.2.7+dfsg/src/OutputReadBuffer.cpp:17:3: note: in C++11 destructors default to ‘noexcept’ +[ 84%] Building CXX object src/CMakeFiles/ngmlr.dir/ScoreBuffer.cpp.o +cd /build/ngmlr-0.2.7+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+dfsg/src/../lib -g -O2 -fdebug-prefix-map=/build/ngmlr-0.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ngmlr.dir/ScoreBuffer.cpp.o -c /build/ngmlr-0.2.7+dfsg/src/ScoreBuffer.cpp In file included from /usr/include/c++/10/map:60, from /build/ngmlr-0.2.7+dfsg/src/SequenceProvider.h:9, from /build/ngmlr-0.2.7+dfsg/src/SequenceProvider.cpp:5: @@ -738,15 +782,6 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -[ 80%] Building CXX object src/CMakeFiles/ngmlr.dir/OutputReadBuffer.cpp.o -cd /build/ngmlr-0.2.7+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+dfsg/src/../lib -g -O2 -fdebug-prefix-map=/build/ngmlr-0.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ngmlr.dir/OutputReadBuffer.cpp.o -c /build/ngmlr-0.2.7+dfsg/src/OutputReadBuffer.cpp -[ 84%] Building CXX object src/CMakeFiles/ngmlr.dir/ScoreBuffer.cpp.o -cd /build/ngmlr-0.2.7+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+dfsg/src/../lib -g -O2 -fdebug-prefix-map=/build/ngmlr-0.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ngmlr.dir/ScoreBuffer.cpp.o -c /build/ngmlr-0.2.7+dfsg/src/ScoreBuffer.cpp -/build/ngmlr-0.2.7+dfsg/src/OutputReadBuffer.cpp: In destructor ‘OutputReadBuffer::~OutputReadBuffer()’: -/build/ngmlr-0.2.7+dfsg/src/OutputReadBuffer.cpp:17:3: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] - 17 | throw "Elements left in buffer!"; - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/ngmlr-0.2.7+dfsg/src/OutputReadBuffer.cpp:17:3: note: in C++11 destructors default to ‘noexcept’ [ 88%] Building CXX object src/CMakeFiles/ngmlr.dir/StrippedSW.cpp.o cd /build/ngmlr-0.2.7+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+dfsg/src/../lib -g -O2 -fdebug-prefix-map=/build/ngmlr-0.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ngmlr.dir/StrippedSW.cpp.o -c /build/ngmlr-0.2.7+dfsg/src/StrippedSW.cpp [ 92%] Building CXX object src/CMakeFiles/ngmlr.dir/unix.cpp.o @@ -817,28 +852,28 @@ [100%] Linking CXX executable ../../bin/ngmlr-0.2.7/ngmlr cd /build/ngmlr-0.2.7+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ngmlr.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/ngmlr-0.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ngmlr.dir/AlignmentMatrix.cpp.o CMakeFiles/ngmlr.dir/AlignmentMatrixFast.cpp.o CMakeFiles/ngmlr.dir/ArgParser.cpp.o CMakeFiles/ngmlr.dir/CS.cpp.o CMakeFiles/ngmlr.dir/CSstatic.cpp.o CMakeFiles/ngmlr.dir/ConvexAlign.cpp.o CMakeFiles/ngmlr.dir/ConvexAlignFast.cpp.o CMakeFiles/ngmlr.dir/LinearRegression.cpp.o CMakeFiles/ngmlr.dir/Logging.cpp.o CMakeFiles/ngmlr.dir/MappedRead.cpp.o CMakeFiles/ngmlr.dir/main.cpp.o CMakeFiles/ngmlr.dir/NGM.cpp.o CMakeFiles/ngmlr.dir/NGMTask.cpp.o CMakeFiles/ngmlr.dir/AlignmentBuffer.cpp.o CMakeFiles/ngmlr.dir/PrefixTable.cpp.o CMakeFiles/ngmlr.dir/ReadProvider.cpp.o CMakeFiles/ngmlr.dir/SamParser.cpp.o CMakeFiles/ngmlr.dir/SAMWriter.cpp.o CMakeFiles/ngmlr.dir/SequenceProvider.cpp.o CMakeFiles/ngmlr.dir/OutputReadBuffer.cpp.o CMakeFiles/ngmlr.dir/ScoreBuffer.cpp.o CMakeFiles/ngmlr.dir/StrippedSW.cpp.o CMakeFiles/ngmlr.dir/unix.cpp.o CMakeFiles/ngmlr.dir/unix_threads.cpp.o -o ../../bin/ngmlr-0.2.7/ngmlr -lz -lpthread -lssw -make[3]: Leaving directory '/build/ngmlr-0.2.7+dfsg/obj-arm-linux-gnueabihf' +make[3]: uscita dalla directory «/build/ngmlr-0.2.7+dfsg/obj-arm-linux-gnueabihf» [100%] Built target ngmlr -make[2]: Leaving directory '/build/ngmlr-0.2.7+dfsg/obj-arm-linux-gnueabihf' +make[2]: uscita dalla directory «/build/ngmlr-0.2.7+dfsg/obj-arm-linux-gnueabihf» /usr/bin/cmake -E cmake_progress_start /build/ngmlr-0.2.7+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 0 -make[1]: Leaving directory '/build/ngmlr-0.2.7+dfsg/obj-arm-linux-gnueabihf' +make[1]: uscita dalla directory «/build/ngmlr-0.2.7+dfsg/obj-arm-linux-gnueabihf» dh_auto_test -O--buildsystem=cmake create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake dh_auto_install -O--buildsystem=cmake - cd obj-arm-linux-gnueabihf && make -j3 install DESTDIR=/build/ngmlr-0.2.7\+dfsg/debian/ngmlr AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" -make[1]: Entering directory '/build/ngmlr-0.2.7+dfsg/obj-arm-linux-gnueabihf' + cd obj-arm-linux-gnueabihf && make -j4 install DESTDIR=/build/ngmlr-0.2.7\+dfsg/debian/ngmlr AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" +make[1]: ingresso nella directory «/build/ngmlr-0.2.7+dfsg/obj-arm-linux-gnueabihf» /usr/bin/cmake -S/build/ngmlr-0.2.7+dfsg -B/build/ngmlr-0.2.7+dfsg/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall -make[2]: Entering directory '/build/ngmlr-0.2.7+dfsg/obj-arm-linux-gnueabihf' -make[2]: Nothing to be done for 'preinstall'. -make[2]: Leaving directory '/build/ngmlr-0.2.7+dfsg/obj-arm-linux-gnueabihf' +make[2]: ingresso nella directory «/build/ngmlr-0.2.7+dfsg/obj-arm-linux-gnueabihf» +make[2]: Nessuna operazione da eseguire per «preinstall». +make[2]: uscita dalla directory «/build/ngmlr-0.2.7+dfsg/obj-arm-linux-gnueabihf» Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/ngmlr-0.2.7+dfsg/debian/ngmlr/usr/bin/ngmlr -make[1]: Leaving directory '/build/ngmlr-0.2.7+dfsg/obj-arm-linux-gnueabihf' +make[1]: uscita dalla directory «/build/ngmlr-0.2.7+dfsg/obj-arm-linux-gnueabihf» dh_installdocs -O--buildsystem=cmake dh_installchangelogs -O--buildsystem=cmake dh_installexamples -O--buildsystem=cmake @@ -859,8 +894,8 @@ dh_gencontrol -O--buildsystem=cmake dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake -dpkg-deb: building package 'ngmlr' in '../ngmlr_0.2.7+dfsg-4_armhf.deb'. -dpkg-deb: building package 'ngmlr-dbgsym' in '../ngmlr-dbgsym_0.2.7+dfsg-4_armhf.deb'. +dpkg-deb: generazione del pacchetto "ngmlr" in "../ngmlr_0.2.7+dfsg-4_armhf.deb". +dpkg-deb: generazione del pacchetto "ngmlr-dbgsym" in "../ngmlr-dbgsym_0.2.7+dfsg-4_armhf.deb". dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../ngmlr_0.2.7+dfsg-4_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -868,12 +903,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/16690/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/16690/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/29124 and its subdirectories -I: Current time: Sat Sep 25 13:16:04 -12 2021 -I: pbuilder-time-stamp: 1632618964 +I: removing directory /srv/workspace/pbuilder/16690 and its subdirectories +I: Current time: Sun Sep 26 15:23:38 +14 2021 +I: pbuilder-time-stamp: 1632619418