Diff of the two buildlogs: -- --- b1/build.log 2021-07-21 09:19:06.629445817 +0000 +++ b2/build.log 2021-07-21 09:45:12.710255873 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue Jul 20 21:07:08 -12 2021 -I: pbuilder-time-stamp: 1626858428 +I: Current time: Wed Jul 21 23:19:36 +14 2021 +I: pbuilder-time-stamp: 1626859176 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration @@ -16,8 +16,8 @@ I: copying [./plast_2.3.2+dfsg-7.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' -gpgv: keyblock resource '/tmp/dpkg-verify-sig.FxPL9c2Z/trustedkeys.kbx': General error -gpgv: Signature made Sat Jan 30 22:25:45 2021 -12 +gpgv: keyblock resource '/tmp/dpkg-verify-sig.vcgHtBLa/trustedkeys.kbx': General error +gpgv: Signature made Mon Feb 1 00:25:45 2021 +14 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./plast_2.3.2+dfsg-7.dsc @@ -32,135 +32,169 @@ dpkg-source: info: applying simde.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/31186/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1847/tmp/hooks/D01_modify_environment starting +debug: Running on cbxi4pro0. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1847/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1847/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=3' - DISTRIBUTION='' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.1.4(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=4' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='55a85cdc095d40fdadb81688b517d22b' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='31186' - PS1='# ' - PS2='> ' + INVOCATION_ID=801171a070b54b88b48fa70072dc95b2 + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1847 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.IuWqlnfbG5/pbuilderrc_NBuN --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.IuWqlnfbG5/b1 --logfile b1/build.log plast_2.3.2+dfsg-7.dsc' - SUDO_GID='114' - SUDO_UID='108' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:8000/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.IuWqlnfbG5/pbuilderrc_hRvI --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.IuWqlnfbG5/b2 --logfile b2/build.log --extrapackages usrmerge plast_2.3.2+dfsg-7.dsc' + SUDO_GID=115 + SUDO_UID=111 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:8000/ I: uname -a - Linux virt64a 5.10.0-7-arm64 #1 SMP Debian 5.10.40-1 (2021-05-28) aarch64 GNU/Linux + Linux i-capture-the-hostname 5.10.0-7-armmp #1 SMP Debian 5.10.40-1 (2021-05-28) armv7l GNU/Linux I: ls -l /bin total 3580 - -rwxr-xr-x 1 root root 816764 Jun 21 14:26 bash - -rwxr-xr-x 3 root root 26052 Jul 20 2020 bunzip2 - -rwxr-xr-x 3 root root 26052 Jul 20 2020 bzcat - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep - -rwxr-xr-x 3 root root 26052 Jul 20 2020 bzip2 - -rwxr-xr-x 1 root root 9636 Jul 20 2020 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore - -rwxr-xr-x 1 root root 26668 Sep 22 2020 cat - -rwxr-xr-x 1 root root 43104 Sep 22 2020 chgrp - -rwxr-xr-x 1 root root 38984 Sep 22 2020 chmod - -rwxr-xr-x 1 root root 43112 Sep 22 2020 chown - -rwxr-xr-x 1 root root 92616 Sep 22 2020 cp - -rwxr-xr-x 1 root root 75524 Dec 10 2020 dash - -rwxr-xr-x 1 root root 75880 Sep 22 2020 date - -rwxr-xr-x 1 root root 55436 Sep 22 2020 dd - -rwxr-xr-x 1 root root 59912 Sep 22 2020 df - -rwxr-xr-x 1 root root 96764 Sep 22 2020 dir - -rwxr-xr-x 1 root root 55012 Feb 7 02:38 dmesg - lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname - -rwxr-xr-x 1 root root 22508 Sep 22 2020 echo - -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep - -rwxr-xr-x 1 root root 22496 Sep 22 2020 false - -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep - -rwxr-xr-x 1 root root 47492 Feb 7 02:38 findmnt - -rwsr-xr-x 1 root root 26076 Feb 26 04:12 fusermount - -rwxr-xr-x 1 root root 124508 Nov 9 2020 grep - -rwxr-xr-x 2 root root 2346 Mar 2 11:30 gunzip - -rwxr-xr-x 1 root root 6376 Mar 2 11:30 gzexe - -rwxr-xr-x 1 root root 64212 Mar 2 11:30 gzip - -rwxr-xr-x 1 root root 13784 Nov 6 2019 hostname - -rwxr-xr-x 1 root root 43180 Sep 22 2020 ln - -rwxr-xr-x 1 root root 35068 Feb 7 2020 login - -rwxr-xr-x 1 root root 96764 Sep 22 2020 ls - -rwxr-xr-x 1 root root 99940 Feb 7 02:38 lsblk - -rwxr-xr-x 1 root root 51408 Sep 22 2020 mkdir - -rwxr-xr-x 1 root root 43184 Sep 22 2020 mknod - -rwxr-xr-x 1 root root 30780 Sep 22 2020 mktemp - -rwxr-xr-x 1 root root 34408 Feb 7 02:38 more - -rwsr-xr-x 1 root root 34400 Feb 7 02:38 mount - -rwxr-xr-x 1 root root 9824 Feb 7 02:38 mountpoint - -rwxr-xr-x 1 root root 88524 Sep 22 2020 mv - lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 26652 Sep 22 2020 pwd - lrwxrwxrwx 1 root root 4 Jun 21 14:26 rbash -> bash - -rwxr-xr-x 1 root root 30740 Sep 22 2020 readlink - -rwxr-xr-x 1 root root 43104 Sep 22 2020 rm - -rwxr-xr-x 1 root root 30732 Sep 22 2020 rmdir - -rwxr-xr-x 1 root root 14144 Sep 27 2020 run-parts - -rwxr-xr-x 1 root root 76012 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Jul 18 21:25 sh -> dash - -rwxr-xr-x 1 root root 22532 Sep 22 2020 sleep - -rwxr-xr-x 1 root root 55360 Sep 22 2020 stty - -rwsr-xr-x 1 root root 46704 Feb 7 02:38 su - -rwxr-xr-x 1 root root 22532 Sep 22 2020 sync - -rwxr-xr-x 1 root root 340872 Feb 16 21:55 tar - -rwxr-xr-x 1 root root 9808 Sep 27 2020 tempfile - -rwxr-xr-x 1 root root 67696 Sep 22 2020 touch - -rwxr-xr-x 1 root root 22496 Sep 22 2020 true - -rwxr-xr-x 1 root root 9636 Feb 26 04:12 ulockmgr_server - -rwsr-xr-x 1 root root 22108 Feb 7 02:38 umount - -rwxr-xr-x 1 root root 22520 Sep 22 2020 uname - -rwxr-xr-x 2 root root 2346 Mar 2 11:30 uncompress - -rwxr-xr-x 1 root root 96764 Sep 22 2020 vdir - -rwxr-xr-x 1 root root 38512 Feb 7 02:38 wdctl - lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Mar 2 11:30 zcat - -rwxr-xr-x 1 root root 1678 Mar 2 11:30 zcmp - -rwxr-xr-x 1 root root 5880 Mar 2 11:30 zdiff - -rwxr-xr-x 1 root root 29 Mar 2 11:30 zegrep - -rwxr-xr-x 1 root root 29 Mar 2 11:30 zfgrep - -rwxr-xr-x 1 root root 2081 Mar 2 11:30 zforce - -rwxr-xr-x 1 root root 7585 Mar 2 11:30 zgrep - -rwxr-xr-x 1 root root 2206 Mar 2 11:30 zless - -rwxr-xr-x 1 root root 1842 Mar 2 11:30 zmore - -rwxr-xr-x 1 root root 4553 Mar 2 11:30 znew -I: user script /srv/workspace/pbuilder/31186/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 816764 Jun 22 16:26 bash + -rwxr-xr-x 3 root root 26052 Jul 21 2020 bunzip2 + -rwxr-xr-x 3 root root 26052 Jul 21 2020 bzcat + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep + -rwxr-xr-x 3 root root 26052 Jul 21 2020 bzip2 + -rwxr-xr-x 1 root root 9636 Jul 21 2020 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore + -rwxr-xr-x 1 root root 26668 Sep 23 2020 cat + -rwxr-xr-x 1 root root 43104 Sep 23 2020 chgrp + -rwxr-xr-x 1 root root 38984 Sep 23 2020 chmod + -rwxr-xr-x 1 root root 43112 Sep 23 2020 chown + -rwxr-xr-x 1 root root 92616 Sep 23 2020 cp + -rwxr-xr-x 1 root root 75524 Dec 11 2020 dash + -rwxr-xr-x 1 root root 75880 Sep 23 2020 date + -rwxr-xr-x 1 root root 55436 Sep 23 2020 dd + -rwxr-xr-x 1 root root 59912 Sep 23 2020 df + -rwxr-xr-x 1 root root 96764 Sep 23 2020 dir + -rwxr-xr-x 1 root root 55012 Feb 8 04:38 dmesg + lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname + -rwxr-xr-x 1 root root 22508 Sep 23 2020 echo + -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep + -rwxr-xr-x 1 root root 22496 Sep 23 2020 false + -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep + -rwxr-xr-x 1 root root 47492 Feb 8 04:38 findmnt + -rwsr-xr-x 1 root root 26076 Feb 27 06:12 fusermount + -rwxr-xr-x 1 root root 124508 Nov 10 2020 grep + -rwxr-xr-x 2 root root 2346 Mar 3 13:30 gunzip + -rwxr-xr-x 1 root root 6376 Mar 3 13:30 gzexe + -rwxr-xr-x 1 root root 64212 Mar 3 13:30 gzip + -rwxr-xr-x 1 root root 13784 Nov 8 2019 hostname + -rwxr-xr-x 1 root root 43180 Sep 23 2020 ln + -rwxr-xr-x 1 root root 35068 Feb 8 2020 login + -rwxr-xr-x 1 root root 96764 Sep 23 2020 ls + -rwxr-xr-x 1 root root 99940 Feb 8 04:38 lsblk + -rwxr-xr-x 1 root root 51408 Sep 23 2020 mkdir + -rwxr-xr-x 1 root root 43184 Sep 23 2020 mknod + -rwxr-xr-x 1 root root 30780 Sep 23 2020 mktemp + -rwxr-xr-x 1 root root 34408 Feb 8 04:38 more + -rwsr-xr-x 1 root root 34400 Feb 8 04:38 mount + -rwxr-xr-x 1 root root 9824 Feb 8 04:38 mountpoint + -rwxr-xr-x 1 root root 88524 Sep 23 2020 mv + lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 19 05:38 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 26652 Sep 23 2020 pwd + lrwxrwxrwx 1 root root 4 Jun 22 16:26 rbash -> bash + -rwxr-xr-x 1 root root 30740 Sep 23 2020 readlink + -rwxr-xr-x 1 root root 43104 Sep 23 2020 rm + -rwxr-xr-x 1 root root 30732 Sep 23 2020 rmdir + -rwxr-xr-x 1 root root 14144 Sep 28 2020 run-parts + -rwxr-xr-x 1 root root 76012 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Jul 21 23:20 sh -> bash + lrwxrwxrwx 1 root root 4 Jul 20 23:28 sh.distrib -> dash + -rwxr-xr-x 1 root root 22532 Sep 23 2020 sleep + -rwxr-xr-x 1 root root 55360 Sep 23 2020 stty + -rwsr-xr-x 1 root root 46704 Feb 8 04:38 su + -rwxr-xr-x 1 root root 22532 Sep 23 2020 sync + -rwxr-xr-x 1 root root 340872 Feb 17 23:55 tar + -rwxr-xr-x 1 root root 9808 Sep 28 2020 tempfile + -rwxr-xr-x 1 root root 67696 Sep 23 2020 touch + -rwxr-xr-x 1 root root 22496 Sep 23 2020 true + -rwxr-xr-x 1 root root 9636 Feb 27 06:12 ulockmgr_server + -rwsr-xr-x 1 root root 22108 Feb 8 04:38 umount + -rwxr-xr-x 1 root root 22520 Sep 23 2020 uname + -rwxr-xr-x 2 root root 2346 Mar 3 13:30 uncompress + -rwxr-xr-x 1 root root 96764 Sep 23 2020 vdir + -rwxr-xr-x 1 root root 38512 Feb 8 04:38 wdctl + lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Mar 3 13:30 zcat + -rwxr-xr-x 1 root root 1678 Mar 3 13:30 zcmp + -rwxr-xr-x 1 root root 5880 Mar 3 13:30 zdiff + -rwxr-xr-x 1 root root 29 Mar 3 13:30 zegrep + -rwxr-xr-x 1 root root 29 Mar 3 13:30 zfgrep + -rwxr-xr-x 1 root root 2081 Mar 3 13:30 zforce + -rwxr-xr-x 1 root root 7585 Mar 3 13:30 zgrep + -rwxr-xr-x 1 root root 2206 Mar 3 13:30 zless + -rwxr-xr-x 1 root root 1842 Mar 3 13:30 zmore + -rwxr-xr-x 1 root root 4553 Mar 3 13:30 znew +I: user script /srv/workspace/pbuilder/1847/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -334,7 +368,7 @@ Get: 128 http://deb.debian.org/debian bullseye/main armhf libpcrecpp0v5 armhf 2:8.39-13 [150 kB] Get: 129 http://deb.debian.org/debian bullseye/main armhf libpcre3-dev armhf 2:8.39-13 [587 kB] Get: 130 http://deb.debian.org/debian bullseye/main armhf libsimde-dev all 0.7.2-4 [259 kB] -Fetched 281 MB in 22s (12.6 MB/s) +Fetched 281 MB in 24s (11.9 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19398 files and directories currently installed.) @@ -899,135 +933,135 @@ update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jconsole to provide /usr/bin/jconsole (jconsole) in auto mode Setting up ca-certificates-java (20190909) ... head: cannot open '/etc/ssl/certs/java/cacerts' for reading: No such file or directory -Adding debian:TrustCor_RootCert_CA-1.pem -Adding debian:QuoVadis_Root_CA_3.pem -Adding debian:Security_Communication_Root_CA.pem -Adding debian:AffirmTrust_Premium.pem -Adding debian:AffirmTrust_Networking.pem -Adding debian:emSign_Root_CA_-_G1.pem -Adding debian:USERTrust_RSA_Certification_Authority.pem -Adding debian:QuoVadis_Root_CA_1_G3.pem -Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem -Adding debian:GTS_Root_R4.pem -Adding debian:COMODO_Certification_Authority.pem -Adding debian:Baltimore_CyberTrust_Root.pem -Adding debian:Starfield_Class_2_CA.pem -Adding debian:TeliaSonera_Root_CA_v1.pem -Adding debian:SZAFIR_ROOT_CA2.pem -Adding debian:Entrust_Root_Certification_Authority.pem -Adding debian:GDCA_TrustAUTH_R5_ROOT.pem +Adding debian:DigiCert_Assured_ID_Root_CA.pem +Adding debian:Security_Communication_RootCA2.pem +Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem +Adding debian:TrustCor_ECA-1.pem +Adding debian:Hongkong_Post_Root_CA_3.pem +Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem +Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem -Adding debian:certSIGN_ROOT_CA.pem -Adding debian:E-Tugra_Certification_Authority.pem -Adding debian:emSign_Root_CA_-_C1.pem -Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem -Adding debian:DST_Root_CA_X3.pem -Adding debian:Global_Chambersign_Root_-_2008.pem +Adding debian:QuoVadis_Root_CA_2_G3.pem +Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:emSign_ECC_Root_CA_-_G3.pem -Adding debian:SwissSign_Gold_CA_-_G2.pem -Adding debian:Amazon_Root_CA_3.pem -Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem -Adding debian:SwissSign_Silver_CA_-_G2.pem -Adding debian:GlobalSign_Root_CA_-_R3.pem -Adding debian:Certum_Trusted_Network_CA.pem -Adding debian:ACCVRAIZ1.pem -Adding debian:GlobalSign_Root_CA.pem +Adding debian:TeliaSonera_Root_CA_v1.pem +Adding debian:E-Tugra_Certification_Authority.pem +Adding debian:CFCA_EV_ROOT.pem +Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem +Adding debian:Network_Solutions_Certificate_Authority.pem Adding debian:e-Szigno_Root_CA_2017.pem -Adding debian:TWCA_Root_Certification_Authority.pem -Adding debian:Certigna_Root_CA.pem -Adding debian:DigiCert_Assured_ID_Root_G3.pem -Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:GTS_Root_R3.pem -Adding debian:Entrust_Root_Certification_Authority_-_G4.pem -Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem -Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem -Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem -Adding debian:T-TeleSec_GlobalRoot_Class_2.pem -Adding debian:NAVER_Global_Root_Certification_Authority.pem -Adding debian:ePKI_Root_Certification_Authority.pem -Adding debian:XRamp_Global_CA_Root.pem +Adding debian:Trustwave_Global_Certification_Authority.pem +Adding debian:emSign_Root_CA_-_C1.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem -Adding debian:Microsec_e-Szigno_Root_CA_2009.pem -Adding debian:Cybertrust_Global_Root.pem -Adding debian:SSL.com_Root_Certification_Authority_ECC.pem -Adding debian:emSign_ECC_Root_CA_-_C3.pem -Adding debian:SecureTrust_CA.pem -Adding debian:TrustCor_RootCert_CA-2.pem -Adding debian:AffirmTrust_Commercial.pem -Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem +Adding debian:NAVER_Global_Root_Certification_Authority.pem Adding debian:EC-ACC.pem -Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem -Adding debian:QuoVadis_Root_CA_3_G3.pem -Adding debian:IdenTrust_Commercial_Root_CA_1.pem -Adding debian:VeriSign_Universal_Root_Certification_Authority.pem -Adding debian:UCA_Global_G2_Root.pem -Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem -Adding debian:Buypass_Class_2_Root_CA.pem -Adding debian:QuoVadis_Root_CA_2_G3.pem -Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem -Adding debian:DigiCert_Global_Root_G3.pem -Adding debian:TrustCor_ECA-1.pem -Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem -Adding debian:GlobalSign_Root_CA_-_R2.pem +Adding debian:Entrust_Root_Certification_Authority_-_G4.pem +Adding debian:TWCA_Global_Root_CA.pem +Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:Trustis_FPS_Root_CA.pem -Adding debian:CA_Disig_Root_R2.pem -Adding debian:Sonera_Class_2_Root_CA.pem -Adding debian:DigiCert_Trusted_Root_G4.pem -Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem -Adding debian:Network_Solutions_Certificate_Authority.pem -Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem +Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem +Adding debian:Amazon_Root_CA_1.pem +Adding debian:T-TeleSec_GlobalRoot_Class_2.pem +Adding debian:VeriSign_Universal_Root_Certification_Authority.pem +Adding debian:QuoVadis_Root_CA_1_G3.pem +Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:AC_RAIZ_FNMT-RCM.pem -Adding debian:QuoVadis_Root_CA.pem -Adding debian:Izenpe.com.pem -Adding debian:Buypass_Class_3_Root_CA.pem -Adding debian:UCA_Extended_Validation_Root.pem +Adding debian:Global_Chambersign_Root_-_2008.pem +Adding debian:Amazon_Root_CA_4.pem +Adding debian:GTS_Root_R4.pem +Adding debian:SwissSign_Gold_CA_-_G2.pem +Adding debian:QuoVadis_Root_CA_3.pem +Adding debian:GlobalSign_Root_CA.pem +Adding debian:Sonera_Class_2_Root_CA.pem Adding debian:certSIGN_Root_CA_G2.pem +Adding debian:QuoVadis_Root_CA_3_G3.pem +Adding debian:DST_Root_CA_X3.pem +Adding debian:Cybertrust_Global_Root.pem +Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem +Adding debian:Amazon_Root_CA_2.pem +Adding debian:AffirmTrust_Commercial.pem +Adding debian:GTS_Root_R2.pem +Adding debian:SwissSign_Silver_CA_-_G2.pem +Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:GTS_Root_R1.pem +Adding debian:Hongkong_Post_Root_CA_1.pem +Adding debian:USERTrust_RSA_Certification_Authority.pem +Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem +Adding debian:Actalis_Authentication_Root_CA.pem +Adding debian:Buypass_Class_3_Root_CA.pem +Adding debian:SZAFIR_ROOT_CA2.pem +Adding debian:DigiCert_Global_Root_G2.pem +Adding debian:Certigna_Root_CA.pem +Adding debian:Entrust_Root_Certification_Authority.pem +Adding debian:Amazon_Root_CA_3.pem +Adding debian:SSL.com_Root_Certification_Authority_ECC.pem +Adding debian:Certum_Trusted_Network_CA.pem +Adding debian:USERTrust_ECC_Certification_Authority.pem +Adding debian:DigiCert_Trusted_Root_G4.pem +Adding debian:COMODO_Certification_Authority.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:Secure_Global_CA.pem -Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem -Adding debian:Atos_TrustedRoot_2011.pem -Adding debian:Entrust_Root_Certification_Authority_-_G2.pem -Adding debian:Actalis_Authentication_Root_CA.pem -Adding debian:T-TeleSec_GlobalRoot_Class_3.pem -Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem -Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem -Adding debian:Amazon_Root_CA_4.pem -Adding debian:ISRG_Root_X1.pem +Adding debian:Comodo_AAA_Services_root.pem +Adding debian:TrustCor_RootCert_CA-1.pem +Adding debian:emSign_Root_CA_-_G1.pem +Adding debian:Chambers_of_Commerce_Root_-_2008.pem +Adding debian:AffirmTrust_Premium_ECC.pem +Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem +Adding debian:TrustCor_RootCert_CA-2.pem +Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem +Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem +Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem +Adding debian:emSign_ECC_Root_CA_-_C3.pem +Adding debian:ePKI_Root_Certification_Authority.pem +Adding debian:DigiCert_Global_Root_CA.pem Adding debian:Certigna.pem -Adding debian:Trustwave_Global_Certification_Authority.pem -Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem +Adding debian:UCA_Global_G2_Root.pem +Adding debian:Security_Communication_Root_CA.pem Adding debian:Staat_der_Nederlanden_Root_CA_-_G3.pem Adding debian:GlobalSign_Root_CA_-_R6.pem -Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem +Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem -Adding debian:SSL.com_Root_Certification_Authority_RSA.pem -Adding debian:Comodo_AAA_Services_root.pem -Adding debian:Amazon_Root_CA_2.pem -Adding debian:DigiCert_Global_Root_G2.pem -Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem +Adding debian:AffirmTrust_Networking.pem +Adding debian:GDCA_TrustAUTH_R5_ROOT.pem +Adding debian:Atos_TrustedRoot_2011.pem +Adding debian:SecureTrust_CA.pem Adding debian:Go_Daddy_Class_2_CA.pem -Adding debian:CFCA_EV_ROOT.pem -Adding debian:COMODO_RSA_Certification_Authority.pem -Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem -Adding debian:Security_Communication_RootCA2.pem -Adding debian:GTS_Root_R2.pem -Adding debian:TWCA_Global_Root_CA.pem -Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem -Adding debian:Hongkong_Post_Root_CA_3.pem -Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem -Adding debian:DigiCert_Global_Root_CA.pem -Adding debian:DigiCert_Assured_ID_Root_CA.pem -Adding debian:DigiCert_Assured_ID_Root_G2.pem +Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:SecureSign_RootCA11.pem -Adding debian:QuoVadis_Root_CA_2.pem -Adding debian:Chambers_of_Commerce_Root_-_2008.pem -Adding debian:Amazon_Root_CA_1.pem -Adding debian:Certum_Trusted_Network_CA_2.pem -Adding debian:AffirmTrust_Premium_ECC.pem -Adding debian:USERTrust_ECC_Certification_Authority.pem +Adding debian:Entrust_Root_Certification_Authority_-_G2.pem +Adding debian:AffirmTrust_Premium.pem +Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem +Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem -Adding debian:Hongkong_Post_Root_CA_1.pem +Adding debian:Microsec_e-Szigno_Root_CA_2009.pem +Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem +Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem +Adding debian:QuoVadis_Root_CA.pem +Adding debian:CA_Disig_Root_R2.pem +Adding debian:Certum_Trusted_Network_CA_2.pem +Adding debian:SSL.com_Root_Certification_Authority_RSA.pem +Adding debian:ACCVRAIZ1.pem +Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem +Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem +Adding debian:DigiCert_Assured_ID_Root_G2.pem +Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem +Adding debian:Starfield_Class_2_CA.pem +Adding debian:certSIGN_ROOT_CA.pem +Adding debian:QuoVadis_Root_CA_2.pem +Adding debian:DigiCert_Global_Root_G3.pem +Adding debian:GlobalSign_Root_CA_-_R2.pem +Adding debian:UCA_Extended_Validation_Root.pem +Adding debian:DigiCert_Assured_ID_Root_G3.pem +Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem +Adding debian:T-TeleSec_GlobalRoot_Class_3.pem +Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem +Adding debian:Izenpe.com.pem +Adding debian:Baltimore_CyberTrust_Root.pem +Adding debian:XRamp_Global_CA_Root.pem +Adding debian:ISRG_Root_X1.pem +Adding debian:Buypass_Class_2_Root_CA.pem +Adding debian:COMODO_RSA_Certification_Authority.pem done. Setting up default-jdk (2:1.11-72) ... Processing triggers for libc-bin (2.31-12) ... @@ -1046,8 +1080,45 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +The following additional packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl +The following NEW packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl usrmerge +0 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. +Need to get 59.5 kB of archives. +After this operation, 157 kB of additional disk space will be used. +Get:1 http://deb.debian.org/debian bullseye/main armhf libnumber-compare-perl all 0.03-1.1 [6956 B] +Get:2 http://deb.debian.org/debian bullseye/main armhf libtext-glob-perl all 0.11-1 [8888 B] +Get:3 http://deb.debian.org/debian bullseye/main armhf libfile-find-rule-perl all 0.34-1 [30.6 kB] +Get:4 http://deb.debian.org/debian bullseye/main armhf usrmerge all 25 [13.0 kB] +debconf: delaying package configuration, since apt-utils is not installed +Fetched 59.5 kB in 0s (661 kB/s) +Selecting previously unselected package libnumber-compare-perl. +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 26689 files and directories currently installed.) +Preparing to unpack .../libnumber-compare-perl_0.03-1.1_all.deb ... +Unpacking libnumber-compare-perl (0.03-1.1) ... +Selecting previously unselected package libtext-glob-perl. +Preparing to unpack .../libtext-glob-perl_0.11-1_all.deb ... +Unpacking libtext-glob-perl (0.11-1) ... +Selecting previously unselected package libfile-find-rule-perl. +Preparing to unpack .../libfile-find-rule-perl_0.34-1_all.deb ... +Unpacking libfile-find-rule-perl (0.34-1) ... +Selecting previously unselected package usrmerge. +Preparing to unpack .../archives/usrmerge_25_all.deb ... +Unpacking usrmerge (25) ... +Setting up libtext-glob-perl (0.11-1) ... +Setting up libnumber-compare-perl (0.03-1.1) ... +Setting up libfile-find-rule-perl (0.34-1) ... +Setting up usrmerge (25) ... +The system has been successfully converted. +Processing triggers for man-db (2.9.4-2) ... +Not building database; man-db/auto-update is not 'true'. I: Building the package -I: Running cd /build/plast-2.3.2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../plast_2.3.2+dfsg-7_source.changes +hostname: Name or service not known +I: Running cd /build/plast-2.3.2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../plast_2.3.2+dfsg-7_source.changes dpkg-buildpackage: info: source package plast dpkg-buildpackage: info: source version 2.3.2+dfsg-7 dpkg-buildpackage: info: source distribution unstable @@ -1097,7 +1168,7 @@ debian/rules override_dh_auto_build-arch make[1]: Entering directory '/build/plast-2.3.2+dfsg' dh_auto_build - cd obj-arm-linux-gnueabihf && make -j3 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-arm-linux-gnueabihf && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/plast-2.3.2+dfsg -B/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks @@ -1109,40 +1180,46 @@ cd /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plast-2.3.2+dfsg /build/plast-2.3.2+dfsg /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/plast.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf' cd /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plast-2.3.2+dfsg /build/plast-2.3.2+dfsg /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/PlastLibrary.dir/DependInfo.cmake --color= -Dependee "/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/PlastLibrary.dir/DependInfo.cmake" is newer than depender "/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/PlastLibrary.dir/depend.internal". -Dependee "/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/PlastLibrary.dir/depend.internal". Dependee "/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/plast.dir/DependInfo.cmake" is newer than depender "/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/plast.dir/depend.internal". +Dependee "/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/PlastLibrary.dir/DependInfo.cmake" is newer than depender "/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/PlastLibrary.dir/depend.internal". Dependee "/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/plast.dir/depend.internal". +Dependee "/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/PlastLibrary.dir/depend.internal". Scanning dependencies of target PlastLibrary +Scanning dependencies of target plast make[4]: Leaving directory '/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf' make -f CMakeFiles/PlastLibrary.dir/build.make CMakeFiles/PlastLibrary.dir/build -Scanning dependencies of target plast make[4]: Leaving directory '/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf' make -f CMakeFiles/plast.dir/build.make CMakeFiles/plast.dir/build make[4]: Entering directory '/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf' make[4]: Entering directory '/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf' -[ 0%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AlgoIndexatorNucleotide.cpp.o [ 0%] Building CXX object CMakeFiles/plast.dir/src/algo/core/impl/AbstractAlgorithm.cpp.o [ 0%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AbstractAlgorithm.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AbstractAlgorithm.cpp.o -c /build/plast-2.3.2+dfsg/src/algo/core/impl/AbstractAlgorithm.cpp /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/algo/core/impl/AbstractAlgorithm.cpp.o -c /build/plast-2.3.2+dfsg/src/algo/core/impl/AbstractAlgorithm.cpp +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AbstractAlgorithm.cpp.o -c /build/plast-2.3.2+dfsg/src/algo/core/impl/AbstractAlgorithm.cpp +[ 0%] Building CXX object CMakeFiles/plast.dir/src/algo/core/impl/AlgoIndexatorNucleotide.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/algo/core/impl/AlgoIndexatorNucleotide.cpp.o -c /build/plast-2.3.2+dfsg/src/algo/core/impl/AlgoIndexatorNucleotide.cpp +[ 0%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AlgoIndexatorNucleotide.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AlgoIndexatorNucleotide.cpp.o -c /build/plast-2.3.2+dfsg/src/algo/core/impl/AlgoIndexatorNucleotide.cpp -[ 1%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AlgorithmPlastn.cpp.o +[ 1%] Building CXX object CMakeFiles/plast.dir/src/algo/core/impl/AlgorithmPlastn.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/algo/core/impl/AlgorithmPlastn.cpp.o -c /build/plast-2.3.2+dfsg/src/algo/core/impl/AlgorithmPlastn.cpp +[ 2%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AlgorithmPlastn.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP 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/build/plast-2.3.2+dfsg/src/algo/core/impl/DatabasesProvider.cpp -[ 2%] Building CXX object CMakeFiles/plast.dir/src/algo/core/impl/AlgorithmPlastn.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/algo/core/impl/AlgorithmPlastn.cpp.o -c /build/plast-2.3.2+dfsg/src/algo/core/impl/AlgorithmPlastn.cpp +[ 2%] Building CXX object CMakeFiles/plast.dir/src/algo/core/impl/DatabasesProvider.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong 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Building CXX object CMakeFiles/plast.dir/src/algo/core/impl/DefaultAlgoEnvironment.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/algo/core/impl/DefaultAlgoEnvironment.cpp.o -c /build/plast-2.3.2+dfsg/src/algo/core/impl/DefaultAlgoEnvironment.cpp In file included from /usr/include/c++/10/vector:72, from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IDatabaseQuickReader.hpp:39, from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/impl/FastaDatabaseQuickReader.hpp:30, @@ -1151,36 +1228,6 @@ /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector, misc::Range > >::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/vector.tcc: In member function 'std::vector, misc::Range > > algo::core::impl::DefaultEnvironment::buildUri(database::IDatabaseQuickReader*, database::IDatabaseQuickReader*)': -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator, misc::Range >*, std::vector, misc::Range > > >' changed in GCC 7.1 - 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 3%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/core/impl/PlastnAlgoConfig.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat 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algo::core::impl::DefaultEnvironment::buildUri(database::IDatabaseQuickReader*, database::IDatabaseQuickReader*)': +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator, misc::Range >*, std::vector, misc::Range > > >' changed in GCC 7.1 + 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 4%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/core/impl/PlastnAlgoConfig.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/algo/core/impl/PlastnAlgoConfig.cpp.o -c /build/plast-2.3.2+dfsg/src/algo/core/impl/PlastnAlgoConfig.cpp +[ 4%] Building CXX object CMakeFiles/plast.dir/src/algo/core/impl/PlastnAlgoConfig.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/algo/core/impl/PlastnAlgoConfig.cpp.o -c /build/plast-2.3.2+dfsg/src/algo/core/impl/PlastnAlgoConfig.cpp +[ 5%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/core/impl/ScoreMatrix.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include 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/build/plast-2.3.2+dfsg/src/algo/stats/impl/StatisticsPlastn.cpp +[ 20%] Building CXX object CMakeFiles/plast.dir/src/algo/stats/impl/StatisticsPlastn.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/algo/stats/impl/StatisticsPlastn.cpp.o -c /build/plast-2.3.2+dfsg/src/algo/stats/impl/StatisticsPlastn.cpp In file included from /usr/include/c++/10/vector:72, from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IAlphabet.hpp:41, @@ -1277,16 +1352,10 @@ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -[ 19%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/Statistics.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/Statistics.cpp.o -c /build/plast-2.3.2+dfsg/src/algo/stats/impl/Statistics.cpp -[ 19%] Building CXX object CMakeFiles/plast.dir/src/algo/stats/impl/StatisticsSpouge.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 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Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/AbstractAlignmentContainer.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/AbstractAlignmentContainer.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/core/impl/AbstractAlignmentContainer.cpp In file included from /usr/include/c++/10/vector:72, from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IAlphabet.hpp:41, from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IWord.hpp:30, @@ -1311,33 +1380,49 @@ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: 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-Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/alignment/tools/impl/AlignmentContainerShrinkCmd.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/tools/impl/AlignmentContainerShrinkCmd.cpp -[ 36%] Building CXX object CMakeFiles/plast.dir/src/database/impl/BlastdbDatabaseQuickReader.cpp.o +[ 43%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbFileIndexReader.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbFileIndexReader.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/BlastdbFileIndexReader.cpp +[ 44%] Building CXX object CMakeFiles/plast.dir/src/database/impl/BlastdbDatabaseQuickReader.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/database/impl/BlastdbDatabaseQuickReader.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/BlastdbDatabaseQuickReader.cpp -[ 36%] Building CXX object CMakeFiles/plast.dir/src/database/impl/BlastdbFileIndexReader.cpp.o +In file included from /usr/include/c++/10/vector:72, + from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IDatabaseQuickReader.hpp:39, + from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/impl/BlastdbDatabaseQuickReader.hpp:30, + from /build/plast-2.3.2+dfsg/src/database/impl/BlastdbDatabaseQuickReader.cpp:17: +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': +/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 426 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/vector:67, + from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IDatabaseQuickReader.hpp:39, + from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/impl/BlastdbDatabaseQuickReader.hpp:30, + from /build/plast-2.3.2+dfsg/src/database/impl/BlastdbDatabaseQuickReader.cpp:17: +/usr/include/c++/10/bits/stl_vector.h: In member function 'virtual void database::impl::BlastdbDatabaseQuickReader::read(u_int64_t)': +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1198 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1198 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +[ 44%] Building CXX object CMakeFiles/plast.dir/src/database/impl/BlastdbFileIndexReader.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/database/impl/BlastdbFileIndexReader.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/BlastdbFileIndexReader.cpp +[ 44%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbSequenceIterator.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbSequenceIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/BlastdbSequenceIterator.cpp In file included from /usr/include/c++/10/vector:72, from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IDatabaseQuickReader.hpp:39, from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/impl/BlastdbDatabaseQuickReader.hpp:30, @@ -1465,8 +1601,6 @@ /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ -[ 37%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/tools/impl/AlignmentOverlapCmd.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/alignment/tools/impl/AlignmentOverlapCmd.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/tools/impl/AlignmentOverlapCmd.cpp In file included from /usr/include/c++/10/vector:67, from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IDatabaseQuickReader.hpp:39, from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/impl/BlastdbDatabaseQuickReader.hpp:30, @@ -1478,22 +1612,20 @@ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -[ 37%] Building CXX object CMakeFiles/plast.dir/src/database/impl/BlastdbSequenceIterator.cpp.o +[ 45%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/BufferedCachedSequenceDatabase.cpp +[ 45%] Building CXX object CMakeFiles/plast.dir/src/database/impl/BlastdbSequenceIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/database/impl/BlastdbSequenceIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/BlastdbSequenceIterator.cpp -[ 38%] Building CXX object CMakeFiles/plast.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o +[ 46%] Building CXX object CMakeFiles/plast.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/BufferedCachedSequenceDatabase.cpp -[ 38%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/tools/impl/AlignmentSplitter.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/alignment/tools/impl/AlignmentSplitter.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/tools/impl/AlignmentSplitter.cpp -[ 38%] Building CXX object CMakeFiles/plast.dir/src/database/impl/BufferedSequenceDatabase.cpp.o +[ 46%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedSequenceDatabase.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedSequenceDatabase.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/BufferedSequenceDatabase.cpp +[ 46%] Building CXX object CMakeFiles/plast.dir/src/database/impl/BufferedSequenceDatabase.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/database/impl/BufferedSequenceDatabase.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/BufferedSequenceDatabase.cpp -[ 38%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/tools/impl/AlignmentSplitterBanded.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/alignment/tools/impl/AlignmentSplitterBanded.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/tools/impl/AlignmentSplitterBanded.cpp -[ 38%] Building CXX object CMakeFiles/plast.dir/src/database/impl/CompositeSequenceDatabase.cpp.o +[ 46%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/CompositeSequenceDatabase.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/CompositeSequenceDatabase.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/CompositeSequenceDatabase.cpp +[ 46%] Building CXX object CMakeFiles/plast.dir/src/database/impl/CompositeSequenceDatabase.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/database/impl/CompositeSequenceDatabase.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/CompositeSequenceDatabase.cpp -[ 39%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/tools/impl/SemiGappedAlign.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/alignment/tools/impl/SemiGappedAlign.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/tools/impl/SemiGappedAlign.cpp -[ 39%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/tools/impl/SemiGappedAlignTraceback.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/alignment/tools/impl/SemiGappedAlignTraceback.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/tools/impl/SemiGappedAlignTraceback.cpp In file included from /usr/include/c++/10/vector:72, from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IAlphabet.hpp:41, from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IWord.hpp:30, @@ -1523,14 +1655,43 @@ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -[ 40%] Building CXX object CMakeFiles/plast.dir/src/database/impl/DefaultAlphabet.cpp.o +[ 47%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/DefaultAlphabet.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/DefaultAlphabet.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/DefaultAlphabet.cpp +[ 47%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp +In file included from /usr/include/c++/10/vector:72, + from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IAlphabet.hpp:41, + from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IWord.hpp:30, + from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/ISequence.hpp:30, + from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/ISequenceIterator.hpp:34, + from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/ISequenceDatabase.hpp:36, + from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/impl/CompositeSequenceDatabase.hpp:31, + from /build/plast-2.3.2+dfsg/src/database/impl/CompositeSequenceDatabase.cpp:17: +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': +/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 426 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]': +/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 +/usr/include/c++/10/bits/vector.tcc: In constructor 'database::impl::CompositeSequenceDatabase::CompositeSequenceDatabase(std::__cxx11::list)': +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/vector:67, + from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IAlphabet.hpp:41, + from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IWord.hpp:30, + from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/ISequence.hpp:30, + from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/ISequenceIterator.hpp:34, + from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/ISequenceDatabase.hpp:36, + from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/impl/CompositeSequenceDatabase.hpp:31, + from /build/plast-2.3.2+dfsg/src/database/impl/CompositeSequenceDatabase.cpp:17: +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1198 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +[ 48%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceIterator.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/FastaSequenceIterator.cpp +[ 49%] Building CXX object CMakeFiles/plast.dir/src/database/impl/DefaultAlphabet.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/database/impl/DefaultAlphabet.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/DefaultAlphabet.cpp -[ 40%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/CompareContainerVisitor.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/CompareContainerVisitor.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/visitors/impl/CompareContainerVisitor.cpp -[ 40%] Building CXX object CMakeFiles/plast.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. 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/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp: In member function 'virtual int database::impl::FastaDatabaseQuickReader::load(const string&)': /build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:200:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 200 | fread (&magic, sizeof(u_int64_t), 1, file); @@ -1585,144 +1746,18 @@ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +[ 49%] Building CXX object CMakeFiles/plast.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. 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'virtual int database::impl::FastaDatabaseQuickReader::load(const string&)': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -[ 41%] Building CXX object CMakeFiles/plast.dir/src/database/impl/FastaSequenceOutput.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/database/impl/FastaSequenceOutput.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/FastaSequenceOutput.cpp -[ 41%] Building CXX object 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-fomit-frame-pointer -o CMakeFiles/plast.dir/src/designpattern/impl/DirectoryIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/designpattern/impl/DirectoryIterator.cpp -[ 48%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/TabulatedOutputVisitor.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/TabulatedOutputVisitor.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/visitors/impl/TabulatedOutputVisitor.cpp -[ 48%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/FileLineIterator.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/designpattern/impl/FileLineIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/designpattern/impl/FileLineIterator.cpp -[ 48%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/XmlOutputVisitor.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/XmlOutputVisitor.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/visitors/impl/XmlOutputVisitor.cpp -[ 49%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/AbstractSequenceIterator.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/AbstractSequenceIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/AbstractSequenceIterator.cpp -[ 50%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/Observer.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/designpattern/impl/Observer.cpp.o -c /build/plast-2.3.2+dfsg/src/designpattern/impl/Observer.cpp -[ 50%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BasicSequenceBuilder.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/BasicSequenceBuilder.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/BasicSequenceBuilder.cpp -[ 50%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbAsn1HeaderDecoder.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbAsn1HeaderDecoder.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/BlastdbAsn1HeaderDecoder.cpp -[ 50%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/Property.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/designpattern/impl/Property.cpp.o -c /build/plast-2.3.2+dfsg/src/designpattern/impl/Property.cpp -[ 51%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbDatabaseQuickReader.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbDatabaseQuickReader.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/BlastdbDatabaseQuickReader.cpp -[ 51%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbFileIndexReader.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbFileIndexReader.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/BlastdbFileIndexReader.cpp -In file included from /usr/include/c++/10/vector:72, - from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IDatabaseQuickReader.hpp:39, - from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/impl/BlastdbDatabaseQuickReader.hpp:30, - from /build/plast-2.3.2+dfsg/src/database/impl/BlastdbDatabaseQuickReader.cpp:17: -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': -/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 426 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:67, - from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IDatabaseQuickReader.hpp:39, - from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/impl/BlastdbDatabaseQuickReader.hpp:30, - from /build/plast-2.3.2+dfsg/src/database/impl/BlastdbDatabaseQuickReader.cpp:17: -/usr/include/c++/10/bits/stl_vector.h: In member function 'virtual void database::impl::BlastdbDatabaseQuickReader::read(u_int64_t)': -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1198 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1198 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -[ 51%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbSequenceIterator.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbSequenceIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/BlastdbSequenceIterator.cpp -[ 52%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/BufferedCachedSequenceDatabase.cpp -[ 53%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/SystemCommand.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/designpattern/impl/SystemCommand.cpp.o -c /build/plast-2.3.2+dfsg/src/designpattern/impl/SystemCommand.cpp -[ 53%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedSequenceDatabase.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedSequenceDatabase.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/BufferedSequenceDatabase.cpp -/build/plast-2.3.2+dfsg/src/designpattern/impl/SystemCommand.cpp: In destructor 'dp::impl::SystemCommand::~SystemCommand()': -/build/plast-2.3.2+dfsg/src/designpattern/impl/SystemCommand.cpp:119:16: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 119 | system (tmp); - | ~~~~~~~^~~~~ -[ 53%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/TokenizerIterator.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/designpattern/impl/TokenizerIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/designpattern/impl/TokenizerIterator.cpp -[ 53%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/CompositeSequenceDatabase.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/CompositeSequenceDatabase.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/CompositeSequenceDatabase.cpp -[ 53%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/WrapperIterator.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/designpattern/impl/WrapperIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/designpattern/impl/WrapperIterator.cpp -[ 54%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/XmlReader.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/designpattern/impl/XmlReader.cpp.o -c /build/plast-2.3.2+dfsg/src/designpattern/impl/XmlReader.cpp -In file included from /usr/include/c++/10/vector:72, - from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IAlphabet.hpp:41, - from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IWord.hpp:30, - from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/ISequence.hpp:30, - from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/ISequenceIterator.hpp:34, - from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/ISequenceDatabase.hpp:36, - from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/impl/CompositeSequenceDatabase.hpp:31, - from /build/plast-2.3.2+dfsg/src/database/impl/CompositeSequenceDatabase.cpp:17: -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': -/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 426 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]': -/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 -/usr/include/c++/10/bits/vector.tcc: In constructor 'database::impl::CompositeSequenceDatabase::CompositeSequenceDatabase(std::__cxx11::list)': -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:67, - from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IAlphabet.hpp:41, - from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IWord.hpp:30, - from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/ISequence.hpp:30, - from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/ISequenceIterator.hpp:34, - from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/ISequenceDatabase.hpp:36, - from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/impl/CompositeSequenceDatabase.hpp:31, - from /build/plast-2.3.2+dfsg/src/database/impl/CompositeSequenceDatabase.cpp:17: -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1198 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -[ 55%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/DefaultAlphabet.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/DefaultAlphabet.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/DefaultAlphabet.cpp -[ 55%] Building CXX object CMakeFiles/plast.dir/src/index/impl/AbstractDatabaseIndex.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/index/impl/AbstractDatabaseIndex.cpp.o -c /build/plast-2.3.2+dfsg/src/index/impl/AbstractDatabaseIndex.cpp -[ 55%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp -[ 56%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceIterator.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/FastaSequenceIterator.cpp +[ 50%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceOutput.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceOutput.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/FastaSequenceOutput.cpp +[ 50%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/ReadingFrameSequenceDatabase.cpp /build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp: In member function 'virtual int database::impl::FastaDatabaseQuickReader::load(const string&)': /build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:200:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 200 | fread (&magic, sizeof(u_int64_t), 1, file); @@ -1777,91 +1812,80 @@ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +[ 50%] Building CXX object CMakeFiles/plast.dir/src/database/impl/FastaSequenceOutput.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/database/impl/FastaSequenceOutput.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/FastaSequenceOutput.cpp /usr/include/c++/10/bits/stl_vector.h: In member function 'virtual int database::impl::FastaDatabaseQuickReader::load(const string&)': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -[ 56%] Building CXX object CMakeFiles/plast.dir/src/index/impl/DatabaseIndex.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/index/impl/DatabaseIndex.cpp.o -c /build/plast-2.3.2+dfsg/src/index/impl/DatabaseIndex.cpp -[ 56%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceOutput.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceOutput.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/FastaSequenceOutput.cpp -[ 56%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/ReadingFrameSequenceDatabase.cpp -[ 57%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o +[ 51%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/ReadingFrameSequenceIterator.cpp -[ 57%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o +[ 51%] Building CXX object CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/ReadingFrameSequenceDatabase.cpp +[ 51%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/ReverseStrandSequenceIterator.cpp -In file included from /usr/include/c++/10/vector:72, - from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IAlphabet.hpp:41, - from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IWord.hpp:30, - from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/ISequence.hpp:30, - from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/ISequenceIterator.hpp:34, - from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/ISequenceDatabase.hpp:36, - from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/index/impl/AbstractDatabaseIndex.hpp:28, - from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/index/impl/DatabaseIndex.hpp:28, - from /build/plast-2.3.2+dfsg/src/index/impl/DatabaseIndex.cpp:17: -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]': -/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 426 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/vector.tcc: In member function 'virtual seed::ISeedIterator* indexation::impl::DatabaseIndexCodonStopOptim::createSeedsIterator(const database::IWord&)': -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 57%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/Sequence.cpp.o +[ 52%] Building CXX object CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/ReadingFrameSequenceIterator.cpp +[ 52%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/Sequence.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/Sequence.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/Sequence.cpp -[ 58%] Building CXX object CMakeFiles/plast.dir/src/index/impl/DatabaseIndexHash.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/index/impl/DatabaseIndexHash.cpp.o -c /build/plast-2.3.2+dfsg/src/index/impl/DatabaseIndexHash.cpp -[ 59%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/SequenceTokenizer.cpp.o +[ 53%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/SequenceTokenizer.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/SequenceTokenizer.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/SequenceTokenizer.cpp -[ 59%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/StringSequenceIterator.cpp.o +[ 53%] Building CXX object CMakeFiles/plast.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/ReverseStrandSequenceIterator.cpp +[ 53%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/StringSequenceIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/StringSequenceIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/StringSequenceIterator.cpp -[ 59%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/CommandDispatcher.cpp.o +[ 53%] Building CXX object CMakeFiles/plast.dir/src/database/impl/Sequence.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/database/impl/Sequence.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/Sequence.cpp +[ 53%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/CommandDispatcher.cpp.o /usr/bin/c++ 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CMakeFiles/plast.dir/src/designpattern/impl/Property.cpp.o -c /build/plast-2.3.2+dfsg/src/designpattern/impl/Property.cpp +[ 61%] Building CXX object CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o -c /build/plast-2.3.2+dfsg/src/index/impl/DatabaseNucleotidIndexOptim.cpp In file included from /usr/include/c++/10/vector:72, from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IAlphabet.hpp:41, from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IWord.hpp:30, @@ -1882,43 +1906,55 @@ /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 65%] Building CXX object CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o -c /build/plast-2.3.2+dfsg/src/index/impl/DatabaseNucleotidIndexOptim.cpp -[ 66%] Building C object CMakeFiles/PlastLibrary.dir/src/index/impl/retrievall.c.o +[ 62%] Building C object CMakeFiles/PlastLibrary.dir/src/index/impl/retrievall.c.o /usr/bin/cc -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/index/impl/retrievall.c.o -c /build/plast-2.3.2+dfsg/src/index/impl/retrievall.c /build/plast-2.3.2+dfsg/src/index/impl/retrievall.c:1075:9: warning: 'get_bits_value' is static but used in inline function 'get_packed_value' which is not static 1075 | return get_bits_value(retr->packed_table,count,retr->vals_length,retr->bits_mask); | ^~~~~~~~~~~~~~ -[ 66%] Building CXX object CMakeFiles/plast.dir/src/launcher/core/PlastOptionsParser.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/core/PlastOptionsParser.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/core/PlastOptionsParser.cpp -[ 67%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/Helper.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/jni/Helper.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/jni/Helper.cpp -[ 67%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/Wrapper.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/jni/Wrapper.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/jni/Wrapper.cpp -[ 67%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastCmd.cpp.o +[ 62%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastCmd.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastCmd.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/core/PlastCmd.cpp -[ 68%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp -[ 68%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp -[ 68%] 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CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp -[ 69%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastOptionsParser.cpp.o +[ 62%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastOptionsParser.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastOptionsParser.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/core/PlastOptionsParser.cpp +[ 63%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/Helper.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/Helper.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/jni/Helper.cpp +[ 64%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/SystemCommand.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/designpattern/impl/SystemCommand.cpp.o -c /build/plast-2.3.2+dfsg/src/designpattern/impl/SystemCommand.cpp +[ 64%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/Wrapper.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/Wrapper.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/jni/Wrapper.cpp +/build/plast-2.3.2+dfsg/src/designpattern/impl/SystemCommand.cpp: In destructor 'dp::impl::SystemCommand::~SystemCommand()': +/build/plast-2.3.2+dfsg/src/designpattern/impl/SystemCommand.cpp:119:16: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 119 | system (tmp); + | ~~~~~~~^~~~~ +[ 64%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/TokenizerIterator.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/designpattern/impl/TokenizerIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/designpattern/impl/TokenizerIterator.cpp +[ 65%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o +/usr/bin/c++ 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-D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/designpattern/impl/WrapperIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/designpattern/impl/WrapperIterator.cpp +[ 65%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp +[ 66%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/XmlReader.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/designpattern/impl/XmlReader.cpp.o -c /build/plast-2.3.2+dfsg/src/designpattern/impl/XmlReader.cpp +[ 66%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp +[ 67%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp +[ 67%] Building CXX object CMakeFiles/plast.dir/src/index/impl/AbstractDatabaseIndex.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/index/impl/AbstractDatabaseIndex.cpp.o -c /build/plast-2.3.2+dfsg/src/index/impl/AbstractDatabaseIndex.cpp +[ 67%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp +[ 67%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp /build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp: In function 'jlong Java_org_inria_genscale_dbscan_impl_plast_RequestManager_createPeerRequest(JNIEnv*, jobject, jobject)': /build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp:316:1: warning: control reaches end of non-void function [-Wreturn-type] 316 | } | ^ -[ 69%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp -[ 70%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/AbstractProgressionObserver.cpp -[ 70%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/AlgoExecutionObserver.cpp +[ 68%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/AbstractProgressionObserver.cpp +[ 68%] Building CXX object CMakeFiles/plast.dir/src/index/impl/DatabaseIndex.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/index/impl/DatabaseIndex.cpp.o -c /build/plast-2.3.2+dfsg/src/index/impl/DatabaseIndex.cpp +[ 68%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/AlgoExecutionObserver.cpp /build/plast-2.3.2+dfsg/src/launcher/observers/AbstractProgressionObserver.cpp: In member function 'std::string launcher::observers::AbstractProgressionObserver::getTimeString(u_int32_t)': /build/plast-2.3.2+dfsg/src/launcher/observers/AbstractProgressionObserver.cpp:201:44: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 201 | snprintf (buffer, sizeof(buffer), "%02ld:%02ld:%2.2f", h, m, (float)s/1000.0); @@ -1932,18 +1968,12 @@ | | | | long int size_t {aka unsigned int} | %02d -[ 70%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/AlgoHitsResultObserver.cpp -[ 71%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/AlgoResultObserver.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/observers/AlgoResultObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/AlgoResultObserver.cpp -[ 72%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/Helper.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/Helper.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/jni/Helper.cpp -[ 72%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/BargraphObserver.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/observers/BargraphObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp -[ 72%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/Wrapper.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/Wrapper.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/jni/Wrapper.cpp -[ 72%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/FileProgressionObserver.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/observers/FileProgressionObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp +[ 68%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/AlgoHitsResultObserver.cpp +[ 69%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoResultObserver.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoResultObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/AlgoResultObserver.cpp +[ 69%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/BargraphObserver.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/BargraphObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp /build/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp: In member function 'void launcher::observers::BargraphObserver::fillTimeBuffer(u_int32_t, char*)': /build/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp:151:27: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 151 | sprintf (buffer, "%02ld:%02ld:%02ld", h, m, s); @@ -1963,10 +1993,30 @@ | | | | long int size_t {aka unsigned int} | %02d -[ 73%] Building CXX object CMakeFiles/plast.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o -c /build/plast-2.3.2+dfsg/src/misc/api/CompleteSubjectDatabaseStats.cpp -[ 74%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp +In file included from /usr/include/c++/10/vector:72, + from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IAlphabet.hpp:41, + from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IWord.hpp:30, + from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/ISequence.hpp:30, + from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/ISequenceIterator.hpp:34, + from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/ISequenceDatabase.hpp:36, + from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/index/impl/AbstractDatabaseIndex.hpp:28, + from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/index/impl/DatabaseIndex.hpp:28, + from /build/plast-2.3.2+dfsg/src/index/impl/DatabaseIndex.cpp:17: +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]': +/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 426 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/vector.tcc: In member function 'virtual seed::ISeedIterator* indexation::impl::DatabaseIndexCodonStopOptim::createSeedsIterator(const database::IWord&)': +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 69%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/FileProgressionObserver.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/FileProgressionObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp +[ 70%] Building CXX object CMakeFiles/plast.dir/src/index/impl/DatabaseIndexHash.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/index/impl/DatabaseIndexHash.cpp.o -c /build/plast-2.3.2+dfsg/src/index/impl/DatabaseIndexHash.cpp /build/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp: In destructor 'virtual launcher::observers::AlignmentProgressionObserver::~AlignmentProgressionObserver()': /build/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp:162:32: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 162 | fprintf (_file, "%ld %.3f %.6f %d %d %.6f %.6f %.6f\n", @@ -1989,20 +2039,24 @@ | ~~~~~~~~~~~~ | | | size_t {aka unsigned int} -[ 74%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp -[ 74%] Building CXX object CMakeFiles/plast.dir/src/misc/impl/ObsfucatedString.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/misc/impl/ObsfucatedString.cpp.o -c /build/plast-2.3.2+dfsg/src/misc/impl/ObsfucatedString.cpp -[ 75%] Building CXX object CMakeFiles/plast.dir/src/misc/impl/OptionsParser.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/misc/impl/OptionsParser.cpp.o -c /build/plast-2.3.2+dfsg/src/misc/impl/OptionsParser.cpp +[ 71%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o -c /build/plast-2.3.2+dfsg/src/misc/api/CompleteSubjectDatabaseStats.cpp +[ 71%] Building CXX object CMakeFiles/plast.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o -c /build/plast-2.3.2+dfsg/src/index/impl/DatabaseNucleotidIndex.cpp +[ 71%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/impl/ObsfucatedString.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/misc/impl/ObsfucatedString.cpp.o -c /build/plast-2.3.2+dfsg/src/misc/impl/ObsfucatedString.cpp +[ 72%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/impl/OptionsParser.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/misc/impl/OptionsParser.cpp.o -c /build/plast-2.3.2+dfsg/src/misc/impl/OptionsParser.cpp +[ 72%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o -c /build/plast-2.3.2+dfsg/src/misc/impl/RangeTree.cpp +[ 72%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/DefaultOsFactory.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/DefaultOsFactory.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/DefaultOsFactory.cpp In file included from /usr/include/c++/10/vector:72, from /build/plast-2.3.2+dfsg/src/misc/impl/ObsfucatedString.cpp:9: /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ -[ 75%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp In file included from /usr/include/c++/10/vector:67, from /build/plast-2.3.2+dfsg/src/misc/impl/ObsfucatedString.cpp:9: /usr/include/c++/10/bits/stl_vector.h: In constructor 'misc::impl::ObsfucatedString::ObsfucatedString(misc::impl::ObsfucatedString::LONG, ...)': @@ -2019,14 +2073,10 @@ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -[ 75%] Building CXX object CMakeFiles/plast.dir/src/misc/impl/RangeTree.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/misc/impl/RangeTree.cpp.o -c /build/plast-2.3.2+dfsg/src/misc/impl/RangeTree.cpp -[ 75%] Building CXX object CMakeFiles/plast.dir/src/os/impl/DefaultOsFactory.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/DefaultOsFactory.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/DefaultOsFactory.cpp -[ 76%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxFile.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/LinuxFile.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp -[ 76%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxMemory.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/LinuxMemory.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/LinuxMemory.cpp +[ 73%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxFile.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxFile.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp +[ 73%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemory.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemory.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/LinuxMemory.cpp /build/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp: In destructor 'os::impl::LinuxFile::~LinuxFile()': /build/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp:42:20: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 42 | system (ss.str().c_str()); @@ -2035,52 +2085,48 @@ /build/plast-2.3.2+dfsg/src/os/impl/LinuxMemory.cpp:46:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 46 | fgets (buffer, sizeof(buffer), file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 76%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxMemoryFile.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/LinuxMemoryFile.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/LinuxMemoryFile.cpp -[ 77%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxThread.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/LinuxThread.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/LinuxThread.cpp -[ 77%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxTime.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/LinuxTime.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/LinuxTime.cpp -[ 77%] Building CXX object CMakeFiles/plast.dir/src/os/impl/MacOsFile.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/MacOsFile.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/MacOsFile.cpp -[ 78%] Building CXX object CMakeFiles/plast.dir/src/os/impl/MacOsMemory.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/MacOsMemory.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/MacOsMemory.cpp -[ 79%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. 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-/build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp:316:1: warning: control reaches end of non-void function [-Wreturn-type] - 316 | } - | ^ -[ 83%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp +[ 73%] Building CXX object 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-I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsThread.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/MacOsThread.cpp +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsTime.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/MacOsTime.cpp +[ 76%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsFile.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsFile.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/WindowsFile.cpp +[ 77%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemory.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemory.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/WindowsMemory.cpp +[ 77%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemoryFile.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemoryFile.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/WindowsMemoryFile.cpp +[ 77%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsThread.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsThread.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/WindowsThread.cpp +[ 78%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsTime.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsTime.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/WindowsTime.cpp +[ 78%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/ZlibFile.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/ZlibFile.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/ZlibFile.cpp +[ 78%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seed/impl/BasicSeedModel.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/seed/impl/BasicSeedModel.cpp.o -c /build/plast-2.3.2+dfsg/src/seed/impl/BasicSeedModel.cpp +[ 78%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedIterator.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/seed/impl/AbstractSeedIterator.cpp +[ 79%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedModel.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedModel.cpp.o -c /build/plast-2.3.2+dfsg/src/seed/impl/AbstractSeedModel.cpp +[ 79%] Building CXX object CMakeFiles/plast.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o -c /build/plast-2.3.2+dfsg/src/index/impl/DatabaseNucleotidIndexOptim.cpp +[ 79%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seed/impl/SubSeedModel.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/seed/impl/SubSeedModel.cpp.o -c /build/plast-2.3.2+dfsg/src/seed/impl/SubSeedModel.cpp +[ 80%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seg/impl/DustMasker.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/seg/impl/DustMasker.cpp.o -c /build/plast-2.3.2+dfsg/src/seg/impl/DustMasker.cpp +[ 80%] Building C object CMakeFiles/PlastLibrary.dir/src/seg/impl/dust.c.o +/usr/bin/cc -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/seg/impl/dust.c.o -c /build/plast-2.3.2+dfsg/src/seg/impl/dust.c /build/plast-2.3.2+dfsg/src/seed/impl/SubSeedModel.cpp: In member function 'void seed::impl::SubSeedModel::dump()': /build/plast-2.3.2+dfsg/src/seed/impl/SubSeedModel.cpp:243:21: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 243 | printf ("[%ld/%ld] ", i, _span); @@ -2100,37 +2146,17 @@ | | | | long int size_t {aka unsigned int} | %d -[ 84%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/AbstractProgressionObserver.cpp -[ 85%] Building CXX object CMakeFiles/plast.dir/src/seg/impl/DustMasker.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/seg/impl/DustMasker.cpp.o -c /build/plast-2.3.2+dfsg/src/seg/impl/DustMasker.cpp -/build/plast-2.3.2+dfsg/src/launcher/observers/AbstractProgressionObserver.cpp: In member function 'std::string launcher::observers::AbstractProgressionObserver::getTimeString(u_int32_t)': -/build/plast-2.3.2+dfsg/src/launcher/observers/AbstractProgressionObserver.cpp:201:44: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'size_t' {aka 'unsigned int'} [-Wformat=] - 201 | snprintf (buffer, sizeof(buffer), "%02ld:%02ld:%2.2f", h, m, (float)s/1000.0); - | ~~~~^ ~ - | | | - | long int size_t {aka unsigned int} - | %02d -/build/plast-2.3.2+dfsg/src/launcher/observers/AbstractProgressionObserver.cpp:201:50: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'size_t' {aka 'unsigned int'} [-Wformat=] - 201 | snprintf (buffer, sizeof(buffer), "%02ld:%02ld:%2.2f", h, m, (float)s/1000.0); - | ~~~~^ ~ - | | | - | long int size_t {aka unsigned int} - | %02d -[ 85%] Building C object CMakeFiles/plast.dir/src/seg/impl/dust.c.o -/usr/bin/cc -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/seg/impl/dust.c.o -c /build/plast-2.3.2+dfsg/src/seg/impl/dust.c -[ 85%] Building C object CMakeFiles/plast.dir/src/seg/impl/genwin.c.o -/usr/bin/cc -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/seg/impl/genwin.c.o -c /build/plast-2.3.2+dfsg/src/seg/impl/genwin.c -[ 85%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/AlgoExecutionObserver.cpp -[ 85%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/AlgoHitsResultObserver.cpp -[ 86%] Building C object CMakeFiles/plast.dir/src/seg/impl/seg.c.o -/usr/bin/cc -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/seg/impl/seg.c.o -c /build/plast-2.3.2+dfsg/src/seg/impl/seg.c -[ 86%] Building CXX object CMakeFiles/plast.dir/src/tools/PlastCmd.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/tools/PlastCmd.cpp.o -c /build/plast-2.3.2+dfsg/src/tools/PlastCmd.cpp -[ 87%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoResultObserver.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoResultObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/AlgoResultObserver.cpp +[ 80%] Building C object CMakeFiles/PlastLibrary.dir/src/seg/impl/genwin.c.o +/usr/bin/cc -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/seg/impl/genwin.c.o -c /build/plast-2.3.2+dfsg/src/seg/impl/genwin.c +[ 81%] Building C object CMakeFiles/PlastLibrary.dir/src/seg/impl/seg.c.o +/usr/bin/cc -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/seg/impl/seg.c.o -c /build/plast-2.3.2+dfsg/src/seg/impl/seg.c +[ 81%] Building CXX object CMakeFiles/PlastLibrary.dir/src/tools/PlastCmd.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/tools/PlastCmd.cpp.o -c /build/plast-2.3.2+dfsg/src/tools/PlastCmd.cpp +[ 82%] Building C object CMakeFiles/plast.dir/src/index/impl/retrievall.c.o +/usr/bin/cc -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/index/impl/retrievall.c.o -c /build/plast-2.3.2+dfsg/src/index/impl/retrievall.c +/build/plast-2.3.2+dfsg/src/index/impl/retrievall.c:1075:9: warning: 'get_bits_value' is static but used in inline function 'get_packed_value' which is not static + 1075 | return get_bits_value(retr->packed_table,count,retr->vals_length,retr->bits_mask); + | ^~~~~~~~~~~~~~ /build/plast-2.3.2+dfsg/src/tools/PlastCmd.cpp: In function 'int main(int, char**)': 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CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastCmd.cpp.o CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastOptionsParser.cpp.o CMakeFiles/PlastLibrary.dir/src/launcher/jni/Helper.cpp.o CMakeFiles/PlastLibrary.dir/src/launcher/jni/Wrapper.cpp.o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoResultObserver.cpp.o CMakeFiles/PlastLibrary.dir/src/launcher/observers/BargraphObserver.cpp.o CMakeFiles/PlastLibrary.dir/src/launcher/observers/FileProgressionObserver.cpp.o CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o CMakeFiles/PlastLibrary.dir/src/misc/impl/ObsfucatedString.cpp.o CMakeFiles/PlastLibrary.dir/src/misc/impl/OptionsParser.cpp.o CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/DefaultOsFactory.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxFile.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemory.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemoryFile.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxThread.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxTime.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsFile.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemory.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemoryFile.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsThread.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsTime.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsFile.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemory.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemoryFile.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsThread.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsTime.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/ZlibFile.cpp.o CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedIterator.cpp.o CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedModel.cpp.o CMakeFiles/PlastLibrary.dir/src/seed/impl/BasicSeedModel.cpp.o CMakeFiles/PlastLibrary.dir/src/seed/impl/SubSeedModel.cpp.o CMakeFiles/PlastLibrary.dir/src/seg/impl/DustMasker.cpp.o CMakeFiles/PlastLibrary.dir/src/seg/impl/dust.c.o CMakeFiles/PlastLibrary.dir/src/seg/impl/genwin.c.o CMakeFiles/PlastLibrary.dir/src/seg/impl/seg.c.o CMakeFiles/PlastLibrary.dir/src/tools/PlastCmd.cpp.o +[ 84%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/Helper.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/jni/Helper.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/jni/Helper.cpp +[ 84%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/Wrapper.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/jni/Wrapper.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/jni/Wrapper.cpp make[4]: Leaving directory '/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf' -[ 88%] Built target plast -[ 88%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/FileProgressionObserver.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/FileProgressionObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp -[ 89%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o -c /build/plast-2.3.2+dfsg/src/misc/api/CompleteSubjectDatabaseStats.cpp +[ 84%] Built target PlastLibrary +[ 85%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp +[ 85%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp +[ 85%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp +[ 86%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp +[ 86%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp +/build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp: In function 'jlong Java_org_inria_genscale_dbscan_impl_plast_RequestManager_createPeerRequest(JNIEnv*, jobject, jobject)': +/build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp:316:1: warning: control reaches end of non-void function [-Wreturn-type] + 316 | } + | ^ +[ 86%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp +[ 87%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/AbstractProgressionObserver.cpp +[ 87%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/AlgoExecutionObserver.cpp +[ 87%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/AlgoHitsResultObserver.cpp +[ 88%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/AlgoResultObserver.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/observers/AlgoResultObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/AlgoResultObserver.cpp +/build/plast-2.3.2+dfsg/src/launcher/observers/AbstractProgressionObserver.cpp: In member function 'std::string launcher::observers::AbstractProgressionObserver::getTimeString(u_int32_t)': +/build/plast-2.3.2+dfsg/src/launcher/observers/AbstractProgressionObserver.cpp:201:44: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'size_t' {aka 'unsigned int'} [-Wformat=] + 201 | snprintf (buffer, sizeof(buffer), "%02ld:%02ld:%2.2f", h, m, (float)s/1000.0); + | ~~~~^ ~ + | | | + | long int size_t {aka unsigned int} + | %02d +/build/plast-2.3.2+dfsg/src/launcher/observers/AbstractProgressionObserver.cpp:201:50: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'size_t' {aka 'unsigned int'} [-Wformat=] + 201 | snprintf (buffer, sizeof(buffer), "%02ld:%02ld:%2.2f", h, m, (float)s/1000.0); + | ~~~~^ ~ + | | | + | long int size_t {aka unsigned int} + | %02d +[ 88%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/BargraphObserver.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/observers/BargraphObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp +[ 88%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/FileProgressionObserver.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/observers/FileProgressionObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp /build/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp: In member function 'void launcher::observers::BargraphObserver::fillTimeBuffer(u_int32_t, char*)': /build/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp:151:27: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 151 | sprintf (buffer, "%02ld:%02ld:%02ld", h, m, s); @@ -2173,8 +2242,8 @@ | | | | long int size_t {aka unsigned int} | %02d -[ 89%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/impl/ObsfucatedString.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/misc/impl/ObsfucatedString.cpp.o -c /build/plast-2.3.2+dfsg/src/misc/impl/ObsfucatedString.cpp +[ 89%] Building CXX object CMakeFiles/plast.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o -c /build/plast-2.3.2+dfsg/src/misc/api/CompleteSubjectDatabaseStats.cpp /build/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp: In destructor 'virtual launcher::observers::AlignmentProgressionObserver::~AlignmentProgressionObserver()': /build/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp:162:32: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 162 | fprintf (_file, "%ld %.3f %.6f %d %d %.6f %.6f %.6f\n", @@ -2197,8 +2266,16 @@ | ~~~~~~~~~~~~ | | | size_t {aka unsigned int} -[ 90%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/impl/OptionsParser.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/misc/impl/OptionsParser.cpp.o -c /build/plast-2.3.2+dfsg/src/misc/impl/OptionsParser.cpp +[ 89%] Building CXX object CMakeFiles/plast.dir/src/misc/impl/ObsfucatedString.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/misc/impl/ObsfucatedString.cpp.o -c /build/plast-2.3.2+dfsg/src/misc/impl/ObsfucatedString.cpp +[ 90%] Building CXX object CMakeFiles/plast.dir/src/misc/impl/OptionsParser.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/misc/impl/OptionsParser.cpp.o -c /build/plast-2.3.2+dfsg/src/misc/impl/OptionsParser.cpp +[ 90%] Building CXX object CMakeFiles/plast.dir/src/misc/impl/RangeTree.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/misc/impl/RangeTree.cpp.o -c /build/plast-2.3.2+dfsg/src/misc/impl/RangeTree.cpp +[ 91%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxFile.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/LinuxFile.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp +[ 91%] Building CXX object CMakeFiles/plast.dir/src/os/impl/DefaultOsFactory.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/DefaultOsFactory.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/DefaultOsFactory.cpp In file included from /usr/include/c++/10/vector:72, from /build/plast-2.3.2+dfsg/src/misc/impl/ObsfucatedString.cpp:9: /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': @@ -2221,64 +2298,54 @@ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -[ 90%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o -c /build/plast-2.3.2+dfsg/src/misc/impl/RangeTree.cpp -[ 90%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/DefaultOsFactory.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/DefaultOsFactory.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/DefaultOsFactory.cpp -[ 91%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxFile.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxFile.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp /build/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp: In destructor 'os::impl::LinuxFile::~LinuxFile()': /build/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp:42:20: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 42 | system (ss.str().c_str()); | ~~~~~~~^~~~~~~~~~~~~~~~~~ -[ 91%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemory.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemory.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/LinuxMemory.cpp -[ 91%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemoryFile.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemoryFile.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/LinuxMemoryFile.cpp +[ 91%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxMemory.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/LinuxMemory.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/LinuxMemory.cpp +[ 91%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxMemoryFile.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/LinuxMemoryFile.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/LinuxMemoryFile.cpp +[ 92%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxThread.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/LinuxThread.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/LinuxThread.cpp /build/plast-2.3.2+dfsg/src/os/impl/LinuxMemory.cpp: In member function 'virtual u_int32_t os::impl::LinuxMemoryAllocator::getMemUsage()': /build/plast-2.3.2+dfsg/src/os/impl/LinuxMemory.cpp:46:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 46 | fgets (buffer, sizeof(buffer), file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 92%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxThread.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxThread.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/LinuxThread.cpp -[ 92%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxTime.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP 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-I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemory.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/MacOsMemory.cpp -[ 93%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemoryFile.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemoryFile.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/MacOsMemoryFile.cpp -[ 93%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsThread.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsThread.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/MacOsThread.cpp -[ 94%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsTime.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsTime.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/MacOsTime.cpp -[ 94%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsFile.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsFile.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/WindowsFile.cpp -[ 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-fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/seed/impl/BasicSeedModel.cpp.o -c /build/plast-2.3.2+dfsg/src/seed/impl/BasicSeedModel.cpp +[ 97%] Building CXX object CMakeFiles/plast.dir/src/seed/impl/SubSeedModel.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/seed/impl/SubSeedModel.cpp.o -c /build/plast-2.3.2+dfsg/src/seed/impl/SubSeedModel.cpp +[ 98%] Building CXX object CMakeFiles/plast.dir/src/seg/impl/DustMasker.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/seg/impl/DustMasker.cpp.o -c /build/plast-2.3.2+dfsg/src/seg/impl/DustMasker.cpp /build/plast-2.3.2+dfsg/src/seed/impl/SubSeedModel.cpp: In member function 'void seed::impl::SubSeedModel::dump()': /build/plast-2.3.2+dfsg/src/seed/impl/SubSeedModel.cpp:243:21: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 243 | printf ("[%ld/%ld] ", i, _span); @@ -2298,10 +2365,14 @@ | | | | long int size_t {aka unsigned int} | %d -[ 99%] Building C object CMakeFiles/PlastLibrary.dir/src/seg/impl/seg.c.o -/usr/bin/cc 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CMakeFiles/PlastLibrary.dir/src/tools/PlastCmd.cpp.o -c /build/plast-2.3.2+dfsg/src/tools/PlastCmd.cpp +[ 98%] Building C object CMakeFiles/plast.dir/src/seg/impl/dust.c.o +/usr/bin/cc -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/seg/impl/dust.c.o -c /build/plast-2.3.2+dfsg/src/seg/impl/dust.c +[ 98%] Building C object CMakeFiles/plast.dir/src/seg/impl/genwin.c.o +/usr/bin/cc -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security 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CMakeFiles/plast.dir/src/os/impl/ZlibFile.cpp.o CMakeFiles/plast.dir/src/seed/impl/AbstractSeedIterator.cpp.o CMakeFiles/plast.dir/src/seed/impl/AbstractSeedModel.cpp.o CMakeFiles/plast.dir/src/seed/impl/BasicSeedModel.cpp.o CMakeFiles/plast.dir/src/seed/impl/SubSeedModel.cpp.o CMakeFiles/plast.dir/src/seg/impl/DustMasker.cpp.o CMakeFiles/plast.dir/src/seg/impl/dust.c.o CMakeFiles/plast.dir/src/seg/impl/genwin.c.o CMakeFiles/plast.dir/src/seg/impl/seg.c.o CMakeFiles/plast.dir/src/tools/PlastCmd.cpp.o -o bin/None/plast -lpthread -lpcre make[4]: Leaving directory '/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf' -[100%] Built target PlastLibrary +[100%] Built target plast make[3]: Leaving directory '/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_start /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 0 make[2]: Leaving directory '/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf' @@ -2344,7 +2415,7 @@ I: Nothing to do for arch:indep binary make[1]: Leaving directory '/build/plast-2.3.2+dfsg' dh_auto_install -O--buildsystem=cmake -Nplast-example - cd obj-arm-linux-gnueabihf && make -j3 install DESTDIR=/build/plast-2.3.2\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-arm-linux-gnueabihf && make -j4 install DESTDIR=/build/plast-2.3.2\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/plast-2.3.2+dfsg -B/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -2356,266 +2427,266 @@ -- Install configuration: "None" -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/core --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/core/PlastOptionsParser.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/core/PlastCmd.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/observers --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/observers/AlgoHitsResultObserver.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/observers/AlgoResultObserver.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/observers/AlgoExecutionObserver.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/observers/BargraphObserver.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/observers/AbstractObserver.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/observers/AbstractProgressionObserver.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/observers/FileProgressionObserver.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.h -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.h -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.h -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.h --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.h -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni/Wrapper.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.h +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.h -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni/Helper.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.h -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni/JniObsfucation.h --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/FastaDatabaseQuickReader.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/BlastdbDatabaseQuickReader.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/ReadingFrameSequenceIterator.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/AbstractSequenceIterator.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/StringSequenceIterator.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/BasicSequenceBuilder.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/BufferedSequenceDatabase.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/DatabaseUtility.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/TruncatedSequenceIterator.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/FastaSequenceOutput.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/BufferedCachedSequenceDatabase.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/BlastdbSequenceIterator.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/FastaSequenceIterator.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/DatabaseVisitorComment.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/SequenceTokenizer.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/BlastdbAsn1HeaderDecoder.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/ReadingFrameSequenceDatabase.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/CompositeSequenceDatabase.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/ReverseStrandSequenceIterator.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/AminoAcidDatabaseQuickReader.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/BlastdbFileIndexReader.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/api --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/api/ISequenceBuilder.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/api/ISequenceIterator.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/api/ISequenceDatabase.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/api/IWord.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/api/IDatabaseQuickReader.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/api/ISequence.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/api/ISequenceCache.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/api/IAlphabet.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/observers +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/observers/AlgoHitsResultObserver.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/observers/FileProgressionObserver.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/observers/BargraphObserver.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/observers/AbstractProgressionObserver.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/observers/AlgoResultObserver.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/observers/AlgoExecutionObserver.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/observers/AbstractObserver.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/core +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/core/PlastOptionsParser.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/core/PlastCmd.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/stats +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/stats/api +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/stats/api/IStatistics.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/stats/impl -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/stats/impl/StatisticsSpouge.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/stats/impl/Statistics.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/stats/impl/StatisticsPlastn.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/stats/api --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/stats/api/IStatistics.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl/PlastnAlgoConfig.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl/DefaultAlgoEnvironment.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl/AlgoIndexatorNucleotide.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl/DefaultAlgoConfig.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl/BasicAlgoIndexator.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl/AlgorithmPlastn.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl/AbstractAlgorithm.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl/ScoreMatrix.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl/DatabasesProvider.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/api --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/api/IAlgoConfig.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/api/IAlgoIndexator.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/api/IDatabasesProvider.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/api/IAlgorithm.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/api/IScoreMatrix.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/api/IAlgoParameters.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/api/IAlgoEvents.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/api/IAlgoEnvironment.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/common --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/common/AbstractHitIterator.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/common/AbstractPipeHitIterator.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/gap --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/gap/CompositionHitIterator.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/gap/FullGapHitIterator.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/gap/SmallGapHitIteratorSSE8.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/gap/SmallGapHitIterator.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/gap/SmallGapHitIteratorNull.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/api +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/api/IHitIterator.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/hsp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/hsp/HspExtensionCmd.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/hsp/AlignmentGeneratorCmd.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/hsp/HspGeneratorCmd.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/ungap --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/ungap/UngapHitIteratorSSE8.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/ungap/UngapExtendHitIterator.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/ungap/UngapHitIteratorNull.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/ungap/UngapHitIteratorSSE16.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/ungap/UngapHitIteratorSSE8.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/ungap/UngapHitIterator.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/ungap/UngapHitIteratorNull.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/gap +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/gap/SmallGapHitIteratorNull.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/gap/CompositionHitIterator.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/gap/FullGapHitIterator.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/gap/SmallGapHitIterator.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/gap/SmallGapHitIteratorSSE8.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/common +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/common/AbstractPipeHitIterator.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/common/AbstractHitIterator.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/seed -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/seed/SeedHitIteratorCached.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/seed/SeedHitIterator.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/hsp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/hsp/AlignmentGeneratorCmd.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/hsp/HspGeneratorCmd.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/hsp/HspExtensionCmd.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/api --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/api/IHitIterator.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/tools --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/IteratorGet.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/SystemCommand.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/RangeIterator.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/Observer.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/ProductIterator.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/WrapperIterator.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/ListIterator.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/TokenizerIterator.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/Property.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/CommandDispatcher.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/FileLineIterator.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/EventCatch.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/XmlReader.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/Vectorterator.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/ConfigFileProperties.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/DirectoryIterator.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/api --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/api/Iterator.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/api/SmartPointer.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/api/ICommand.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/api/IObserver.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/api/IProperty.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/CommonOsImpl.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/WindowsMemory.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/ZlibFile.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/LinuxTime.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/LinuxMemory.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/LinuxThread.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/MacOsThread.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/LinuxFile.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/WindowsThread.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/WindowsTime.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/WindowsMemoryFile.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/TimeTools.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/MacOsTime.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/LinuxMemoryFile.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/MacOsMemoryFile.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/MacOsFile.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/WindowsFile.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/MacOsMemory.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/DefaultOsFactory.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/api --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/api/IResource.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/api/IMemoryFile.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/api/IMemory.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/api/IFile.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/api/IThread.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/api/ITime.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/api/IOsFactory.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seed --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seed/impl --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seed/impl/BasicSeedModel.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seed/impl/SubSeedModel.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seed/impl/AbstractSeedIterator.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seed/impl/AbstractSeedModel.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seed/api --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seed/api/ISeed.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seed/api/ISeedModel.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seed/api/ISeedIterator.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/index --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/index/impl --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/index/impl/DatabaseNucleotidIndexOptim.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/index/impl/DatabaseNucleotidIndex.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/index/impl/DatabaseIndex.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/index/impl/AbstractDatabaseIndex.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/index/impl/retrievall.h --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/index/impl/DatabaseIndexHash.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/index/api --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/index/api/IDatabaseIndex.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/index/api/IOccurrenceIterator.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/api +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/api/IAlgoParameters.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/api/IAlgoEnvironment.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/api/IDatabasesProvider.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/api/IScoreMatrix.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/api/IAlgoIndexator.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/api/IAlgoEvents.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/api/IAlgorithm.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/api/IAlgoConfig.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl/ScoreMatrix.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl/PlastnAlgoConfig.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl/DatabasesProvider.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl/BasicAlgoIndexator.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl/AbstractAlgorithm.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl/AlgorithmPlastn.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl/AlgoIndexatorNucleotide.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl/DefaultAlgoConfig.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl/DefaultAlgoEnvironment.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/misc --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/impl --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/impl/Option.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/impl/ObsfucatedString.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/impl/OptionsParser.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/api -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/api/PlastStrings.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/api/RangeTree.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/api/PlastStringsRepository.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/api/version.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/api/RangeTree.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/api/obsfucation.h --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/api/macros.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/api/types.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/api/CompleteSubjectDatabaseStats.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/api/version.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/api/types.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/api/Vector.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/api/macros.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/impl +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/impl/OptionsParser.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/impl/ObsfucatedString.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/impl/Option.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/api +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/api/ISequenceDatabase.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/api/ISequenceBuilder.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/api/IAlphabet.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/api/IDatabaseQuickReader.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/api/ISequence.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/api/IWord.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/api/ISequenceCache.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/api/ISequenceIterator.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/BlastdbAsn1HeaderDecoder.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/FastaSequenceIterator.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/BlastdbSequenceIterator.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/BufferedCachedSequenceDatabase.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/FastaDatabaseQuickReader.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/DatabaseVisitorComment.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/BlastdbFileIndexReader.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/BasicSequenceBuilder.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/ReadingFrameSequenceDatabase.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/TruncatedSequenceIterator.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/DatabaseUtility.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/FastaSequenceOutput.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/AminoAcidDatabaseQuickReader.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/BlastdbDatabaseQuickReader.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/ReadingFrameSequenceIterator.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/StringSequenceIterator.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/AbstractSequenceIterator.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/BufferedSequenceDatabase.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/CompositeSequenceDatabase.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/SequenceTokenizer.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/ReverseStrandSequenceIterator.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/index +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/index/api +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/index/api/IOccurrenceIterator.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/index/api/IDatabaseIndex.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/index/impl +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/index/impl/retrievall.h +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/index/impl/AbstractDatabaseIndex.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/index/impl/DatabaseNucleotidIndexOptim.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/index/impl/DatabaseNucleotidIndex.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/index/impl/DatabaseIndex.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/index/impl/DatabaseIndexHash.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/CompareContainerVisitor.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/HierarchyAlignmentVisitor.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/MaxHitsPerQueryVisitor.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/OstreamVisitor.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/ModifierContainerVisitor.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/CompareResultVisitor.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/QueryReorderVisitor.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/TabulatedOutputVisitor.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/AdapterAlignmentVisitor.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/ShrinkContainerVisitor.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/ModelBuilderVisitor.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/ReverseStrandVisitor.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/ProxyVisitor.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/SortContainerVisitor.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/NucleotidConversionVisitor.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/RawOutputVisitor.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/XmlOutputVisitor.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/FilterContainerVisitor.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/CompareResultQryVisitor.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/api +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/api/IHspContainer.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/api/IAlignmentContainerVisitor.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/api/IAlignmentContainerFactory.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/api/IAlignmentContainerModel.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/api/IAlignmentContainer.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/api/Alignment.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/impl --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/impl/UngapAlignmentContainer.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/impl/NullAlignmentContainer.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/impl/HspContainer.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/impl/ReaderAlignmentContainer.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/impl/AbstractAlignmentContainer.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/impl/AlignmentContainerFactory.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/impl/UngapAlignmentContainer.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/impl/ReaderAlignmentContainer.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/impl/BasicAlignmentContainer.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/impl/NullAlignmentContainer.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/api --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/api/IAlignmentContainerFactory.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/api/IAlignmentContainerVisitor.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/api/Alignment.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/api/IHspContainer.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/api/IAlignmentContainer.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/api/IAlignmentContainerModel.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/impl/AbstractAlignmentContainer.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/tools +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/tools/api +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/tools/api/ISemiGappedAlign.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/tools/api/IAlignmentSplitter.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/tools/impl -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/tools/impl/SemiGappedAlignTraceback.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/tools/impl/AlignmentSplitter.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/tools/impl/AlignmentContainerShrinkCmd.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/tools/impl/AlignmentOverlapCmd.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/tools/impl/AlignmentSplitterBanded.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/tools/impl/SemiGappedAlign.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/tools/impl/AlignmentOverlapCmd.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/tools/api --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/tools/api/ISemiGappedAlign.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/tools/api/IAlignmentSplitter.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/tools/impl/AlignmentContainerShrinkCmd.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/tools/impl/AlignmentSplitter.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/filter +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/filter/api +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/filter/api/IAlignmentFilter.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/filter/impl -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/filter/impl/AlignmentFilterOperator.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/filter/impl/AlignmentFilterXML.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/filter/impl/AbstractAlignmentFilterFactory.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/filter/impl/AlignmentFilterFactory.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/filter/impl/AlignmentFilterXML.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/filter/api --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/filter/api/IAlignmentFilter.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/MaxHitsPerQueryVisitor.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/ReverseStrandVisitor.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/AdapterAlignmentVisitor.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/NucleotidConversionVisitor.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/XmlOutputVisitor.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/ProxyVisitor.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/RawOutputVisitor.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/FilterContainerVisitor.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/QueryReorderVisitor.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/TabulatedOutputVisitor.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/CompareContainerVisitor.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/ModelBuilderVisitor.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/CompareResultQryVisitor.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/ShrinkContainerVisitor.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/ModifierContainerVisitor.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/SortContainerVisitor.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/OstreamVisitor.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/CompareResultVisitor.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/HierarchyAlignmentVisitor.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/api +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/api/Iterator.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/api/IObserver.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/api/IProperty.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/api/SmartPointer.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/api/ICommand.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/Property.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/IteratorGet.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/FileLineIterator.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/SystemCommand.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/ProductIterator.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/TokenizerIterator.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/XmlReader.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/EventCatch.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/WrapperIterator.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/CommandDispatcher.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/DirectoryIterator.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/Vectorterator.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/Observer.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/RangeIterator.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/ConfigFileProperties.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/ListIterator.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seg --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seg/impl --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seg/impl/lnfac.pri --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seg/impl/DustMasker.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seg/api --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seg/api/genwin.h -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seg/api/seg.h +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seg/api/genwin.h +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seg/impl +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seg/impl/DustMasker.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seg/impl/lnfac.pri +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seed +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seed/api +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seed/api/ISeedModel.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seed/api/ISeedIterator.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seed/api/ISeed.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seed/impl +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seed/impl/AbstractSeedIterator.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seed/impl/BasicSeedModel.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seed/impl/SubSeedModel.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seed/impl/AbstractSeedModel.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/api +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/api/IMemory.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/api/IMemoryFile.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/api/IFile.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/api/ITime.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/api/IOsFactory.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/api/IThread.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/api/IResource.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/MacOsMemory.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/LinuxThread.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/WindowsMemory.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/WindowsMemoryFile.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/DefaultOsFactory.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/WindowsTime.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/MacOsFile.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/MacOsThread.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/WindowsThread.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/ZlibFile.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/TimeTools.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/WindowsFile.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/MacOsMemoryFile.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/LinuxMemoryFile.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/CommonOsImpl.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/MacOsTime.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/LinuxMemory.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/LinuxFile.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/LinuxTime.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/tools make[1]: Leaving directory '/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf' debian/rules override_dh_install-arch make[1]: Entering directory '/build/plast-2.3.2+dfsg' @@ -2661,12 +2732,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1847/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1847/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/31186 and its subdirectories -I: Current time: Tue Jul 20 21:19:02 -12 2021 -I: pbuilder-time-stamp: 1626859142 +I: removing directory /srv/workspace/pbuilder/1847 and its subdirectories +I: Current time: Wed Jul 21 23:45:08 +14 2021 +I: pbuilder-time-stamp: 1626860708