Diff of the two buildlogs: -- --- b1/build.log 2021-07-22 14:51:48.472026206 +0000 +++ b2/build.log 2021-07-22 15:29:38.059278465 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Jul 22 02:28:38 -12 2021 -I: pbuilder-time-stamp: 1626964118 +I: Current time: Fri Jul 23 04:52:12 +14 2021 +I: pbuilder-time-stamp: 1626965532 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration @@ -16,8 +16,8 @@ I: copying [./racon_1.4.20-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' -gpgv: keyblock resource '/tmp/dpkg-verify-sig.zUapmeNZ/trustedkeys.kbx': General error -gpgv: Signature made Mon Jan 18 22:04:56 2021 -12 +gpgv: keyblock resource '/tmp/dpkg-verify-sig.CBdfftlE/trustedkeys.kbx': General error +gpgv: Signature made Wed Jan 20 00:04:56 2021 +14 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./racon_1.4.20-1.dsc @@ -30,135 +30,169 @@ dpkg-source: info: applying py3 I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/13215/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3090/tmp/hooks/D01_modify_environment starting +debug: Running on virt64b. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3090/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3090/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=3' - DISTRIBUTION='' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.1.4(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=4' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='53d095f195a944fe916e811f8c98c7b9' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='13215' - PS1='# ' - PS2='> ' + INVOCATION_ID=748b58540c8b48788e5ff2fd9c91e7a1 + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3090 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.UWUnNtgLix/pbuilderrc_hGJq --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.UWUnNtgLix/b1 --logfile b1/build.log racon_1.4.20-1.dsc' - SUDO_GID='112' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:8000/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.UWUnNtgLix/pbuilderrc_yDpK --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.UWUnNtgLix/b2 --logfile b2/build.log --extrapackages usrmerge racon_1.4.20-1.dsc' + SUDO_GID=113 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:8000/ I: uname -a - Linux virt32b 5.10.0-7-armmp-lpae #1 SMP Debian 5.10.40-1 (2021-05-28) armv7l GNU/Linux + Linux i-capture-the-hostname 5.10.0-7-arm64 #1 SMP Debian 5.10.40-1 (2021-05-28) aarch64 GNU/Linux I: ls -l /bin total 3580 - -rwxr-xr-x 1 root root 816764 Jun 21 14:26 bash - -rwxr-xr-x 3 root root 26052 Jul 20 2020 bunzip2 - -rwxr-xr-x 3 root root 26052 Jul 20 2020 bzcat - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep - -rwxr-xr-x 3 root root 26052 Jul 20 2020 bzip2 - -rwxr-xr-x 1 root root 9636 Jul 20 2020 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore - -rwxr-xr-x 1 root root 26668 Sep 22 2020 cat - -rwxr-xr-x 1 root root 43104 Sep 22 2020 chgrp - -rwxr-xr-x 1 root root 38984 Sep 22 2020 chmod - -rwxr-xr-x 1 root root 43112 Sep 22 2020 chown - -rwxr-xr-x 1 root root 92616 Sep 22 2020 cp - -rwxr-xr-x 1 root root 75524 Dec 10 2020 dash - -rwxr-xr-x 1 root root 75880 Sep 22 2020 date - -rwxr-xr-x 1 root root 55436 Sep 22 2020 dd - -rwxr-xr-x 1 root root 59912 Sep 22 2020 df - -rwxr-xr-x 1 root root 96764 Sep 22 2020 dir - -rwxr-xr-x 1 root root 55012 Feb 7 02:38 dmesg - lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname - -rwxr-xr-x 1 root root 22508 Sep 22 2020 echo - -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep - -rwxr-xr-x 1 root root 22496 Sep 22 2020 false - -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep - -rwxr-xr-x 1 root root 47492 Feb 7 02:38 findmnt - -rwsr-xr-x 1 root root 26076 Feb 26 04:12 fusermount - -rwxr-xr-x 1 root root 124508 Nov 9 2020 grep - -rwxr-xr-x 2 root root 2346 Mar 2 11:30 gunzip - -rwxr-xr-x 1 root root 6376 Mar 2 11:30 gzexe - -rwxr-xr-x 1 root root 64212 Mar 2 11:30 gzip - -rwxr-xr-x 1 root root 13784 Nov 6 2019 hostname - -rwxr-xr-x 1 root root 43180 Sep 22 2020 ln - -rwxr-xr-x 1 root root 35068 Feb 7 2020 login - -rwxr-xr-x 1 root root 96764 Sep 22 2020 ls - -rwxr-xr-x 1 root root 99940 Feb 7 02:38 lsblk - -rwxr-xr-x 1 root root 51408 Sep 22 2020 mkdir - -rwxr-xr-x 1 root root 43184 Sep 22 2020 mknod - -rwxr-xr-x 1 root root 30780 Sep 22 2020 mktemp - -rwxr-xr-x 1 root root 34408 Feb 7 02:38 more - -rwsr-xr-x 1 root root 34400 Feb 7 02:38 mount - -rwxr-xr-x 1 root root 9824 Feb 7 02:38 mountpoint - -rwxr-xr-x 1 root root 88524 Sep 22 2020 mv - lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 26652 Sep 22 2020 pwd - lrwxrwxrwx 1 root root 4 Jun 21 14:26 rbash -> bash - -rwxr-xr-x 1 root root 30740 Sep 22 2020 readlink - -rwxr-xr-x 1 root root 43104 Sep 22 2020 rm - -rwxr-xr-x 1 root root 30732 Sep 22 2020 rmdir - -rwxr-xr-x 1 root root 14144 Sep 27 2020 run-parts - -rwxr-xr-x 1 root root 76012 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Jul 20 21:25 sh -> dash - -rwxr-xr-x 1 root root 22532 Sep 22 2020 sleep - -rwxr-xr-x 1 root root 55360 Sep 22 2020 stty - -rwsr-xr-x 1 root root 46704 Feb 7 02:38 su - -rwxr-xr-x 1 root root 22532 Sep 22 2020 sync - -rwxr-xr-x 1 root root 340872 Feb 16 21:55 tar - -rwxr-xr-x 1 root root 9808 Sep 27 2020 tempfile - -rwxr-xr-x 1 root root 67696 Sep 22 2020 touch - -rwxr-xr-x 1 root root 22496 Sep 22 2020 true - -rwxr-xr-x 1 root root 9636 Feb 26 04:12 ulockmgr_server - -rwsr-xr-x 1 root root 22108 Feb 7 02:38 umount - -rwxr-xr-x 1 root root 22520 Sep 22 2020 uname - -rwxr-xr-x 2 root root 2346 Mar 2 11:30 uncompress - -rwxr-xr-x 1 root root 96764 Sep 22 2020 vdir - -rwxr-xr-x 1 root root 38512 Feb 7 02:38 wdctl - lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Mar 2 11:30 zcat - -rwxr-xr-x 1 root root 1678 Mar 2 11:30 zcmp - -rwxr-xr-x 1 root root 5880 Mar 2 11:30 zdiff - -rwxr-xr-x 1 root root 29 Mar 2 11:30 zegrep - -rwxr-xr-x 1 root root 29 Mar 2 11:30 zfgrep - -rwxr-xr-x 1 root root 2081 Mar 2 11:30 zforce - -rwxr-xr-x 1 root root 7585 Mar 2 11:30 zgrep - -rwxr-xr-x 1 root root 2206 Mar 2 11:30 zless - -rwxr-xr-x 1 root root 1842 Mar 2 11:30 zmore - -rwxr-xr-x 1 root root 4553 Mar 2 11:30 znew -I: user script /srv/workspace/pbuilder/13215/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 816764 Jun 22 16:26 bash + -rwxr-xr-x 3 root root 26052 Jul 21 2020 bunzip2 + -rwxr-xr-x 3 root root 26052 Jul 21 2020 bzcat + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep + -rwxr-xr-x 3 root root 26052 Jul 21 2020 bzip2 + -rwxr-xr-x 1 root root 9636 Jul 21 2020 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore + -rwxr-xr-x 1 root root 26668 Sep 23 2020 cat + -rwxr-xr-x 1 root root 43104 Sep 23 2020 chgrp + -rwxr-xr-x 1 root root 38984 Sep 23 2020 chmod + -rwxr-xr-x 1 root root 43112 Sep 23 2020 chown + -rwxr-xr-x 1 root root 92616 Sep 23 2020 cp + -rwxr-xr-x 1 root root 75524 Dec 11 2020 dash + -rwxr-xr-x 1 root root 75880 Sep 23 2020 date + -rwxr-xr-x 1 root root 55436 Sep 23 2020 dd + -rwxr-xr-x 1 root root 59912 Sep 23 2020 df + -rwxr-xr-x 1 root root 96764 Sep 23 2020 dir + -rwxr-xr-x 1 root root 55012 Feb 8 04:38 dmesg + lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname + -rwxr-xr-x 1 root root 22508 Sep 23 2020 echo + -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep + -rwxr-xr-x 1 root root 22496 Sep 23 2020 false + -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep + -rwxr-xr-x 1 root root 47492 Feb 8 04:38 findmnt + -rwsr-xr-x 1 root root 26076 Feb 27 06:12 fusermount + -rwxr-xr-x 1 root root 124508 Nov 10 2020 grep + -rwxr-xr-x 2 root root 2346 Mar 3 13:30 gunzip + -rwxr-xr-x 1 root root 6376 Mar 3 13:30 gzexe + -rwxr-xr-x 1 root root 64212 Mar 3 13:30 gzip + -rwxr-xr-x 1 root root 13784 Nov 8 2019 hostname + -rwxr-xr-x 1 root root 43180 Sep 23 2020 ln + -rwxr-xr-x 1 root root 35068 Feb 8 2020 login + -rwxr-xr-x 1 root root 96764 Sep 23 2020 ls + -rwxr-xr-x 1 root root 99940 Feb 8 04:38 lsblk + -rwxr-xr-x 1 root root 51408 Sep 23 2020 mkdir + -rwxr-xr-x 1 root root 43184 Sep 23 2020 mknod + -rwxr-xr-x 1 root root 30780 Sep 23 2020 mktemp + -rwxr-xr-x 1 root root 34408 Feb 8 04:38 more + -rwsr-xr-x 1 root root 34400 Feb 8 04:38 mount + -rwxr-xr-x 1 root root 9824 Feb 8 04:38 mountpoint + -rwxr-xr-x 1 root root 88524 Sep 23 2020 mv + lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 19 05:38 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 26652 Sep 23 2020 pwd + lrwxrwxrwx 1 root root 4 Jun 22 16:26 rbash -> bash + -rwxr-xr-x 1 root root 30740 Sep 23 2020 readlink + -rwxr-xr-x 1 root root 43104 Sep 23 2020 rm + -rwxr-xr-x 1 root root 30732 Sep 23 2020 rmdir + -rwxr-xr-x 1 root root 14144 Sep 28 2020 run-parts + -rwxr-xr-x 1 root root 76012 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Jul 23 04:52 sh -> bash + lrwxrwxrwx 1 root root 4 Jul 21 23:25 sh.distrib -> dash + -rwxr-xr-x 1 root root 22532 Sep 23 2020 sleep + -rwxr-xr-x 1 root root 55360 Sep 23 2020 stty + -rwsr-xr-x 1 root root 46704 Feb 8 04:38 su + -rwxr-xr-x 1 root root 22532 Sep 23 2020 sync + -rwxr-xr-x 1 root root 340872 Feb 17 23:55 tar + -rwxr-xr-x 1 root root 9808 Sep 28 2020 tempfile + -rwxr-xr-x 1 root root 67696 Sep 23 2020 touch + -rwxr-xr-x 1 root root 22496 Sep 23 2020 true + -rwxr-xr-x 1 root root 9636 Feb 27 06:12 ulockmgr_server + -rwsr-xr-x 1 root root 22108 Feb 8 04:38 umount + -rwxr-xr-x 1 root root 22520 Sep 23 2020 uname + -rwxr-xr-x 2 root root 2346 Mar 3 13:30 uncompress + -rwxr-xr-x 1 root root 96764 Sep 23 2020 vdir + -rwxr-xr-x 1 root root 38512 Feb 8 04:38 wdctl + lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Mar 3 13:30 zcat + -rwxr-xr-x 1 root root 1678 Mar 3 13:30 zcmp + -rwxr-xr-x 1 root root 5880 Mar 3 13:30 zdiff + -rwxr-xr-x 1 root root 29 Mar 3 13:30 zegrep + -rwxr-xr-x 1 root root 29 Mar 3 13:30 zfgrep + -rwxr-xr-x 1 root root 2081 Mar 3 13:30 zforce + -rwxr-xr-x 1 root root 7585 Mar 3 13:30 zgrep + -rwxr-xr-x 1 root root 2206 Mar 3 13:30 zless + -rwxr-xr-x 1 root root 1842 Mar 3 13:30 zmore + -rwxr-xr-x 1 root root 4553 Mar 3 13:30 znew +I: user script /srv/workspace/pbuilder/3090/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -272,7 +306,7 @@ Get: 60 http://deb.debian.org/debian bullseye/main armhf libspoa-dev armhf 4.0.7+ds-1+b1 [7000 B] Get: 61 http://deb.debian.org/debian bullseye/main armhf libthread-pool-dev all 3.0.2-1 [4376 B] Get: 62 http://deb.debian.org/debian bullseye/main armhf rampler armhf 2.0.0-1 [19.8 kB] -Fetched 28.2 MB in 4s (7165 kB/s) +Fetched 28.2 MB in 3s (9833 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19398 files and directories currently installed.) @@ -535,8 +569,45 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +The following additional packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl +The following NEW packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl usrmerge +0 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. +Need to get 59.5 kB of archives. +After this operation, 157 kB of additional disk space will be used. +Get:1 http://deb.debian.org/debian bullseye/main armhf libnumber-compare-perl all 0.03-1.1 [6956 B] +Get:2 http://deb.debian.org/debian bullseye/main armhf libtext-glob-perl all 0.11-1 [8888 B] +Get:3 http://deb.debian.org/debian bullseye/main armhf libfile-find-rule-perl all 0.34-1 [30.6 kB] +Get:4 http://deb.debian.org/debian bullseye/main armhf usrmerge all 25 [13.0 kB] +debconf: delaying package configuration, since apt-utils is not installed +Fetched 59.5 kB in 0s (1170 kB/s) +Selecting previously unselected package libnumber-compare-perl. +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 25005 files and directories currently installed.) +Preparing to unpack .../libnumber-compare-perl_0.03-1.1_all.deb ... +Unpacking libnumber-compare-perl (0.03-1.1) ... +Selecting previously unselected package libtext-glob-perl. +Preparing to unpack .../libtext-glob-perl_0.11-1_all.deb ... +Unpacking libtext-glob-perl (0.11-1) ... +Selecting previously unselected package libfile-find-rule-perl. +Preparing to unpack .../libfile-find-rule-perl_0.34-1_all.deb ... +Unpacking libfile-find-rule-perl (0.34-1) ... +Selecting previously unselected package usrmerge. +Preparing to unpack .../archives/usrmerge_25_all.deb ... +Unpacking usrmerge (25) ... +Setting up libtext-glob-perl (0.11-1) ... +Setting up libnumber-compare-perl (0.03-1.1) ... +Setting up libfile-find-rule-perl (0.34-1) ... +Setting up usrmerge (25) ... +The system has been successfully converted. +Processing triggers for man-db (2.9.4-2) ... +Not building database; man-db/auto-update is not 'true'. I: Building the package -I: Running cd /build/racon-1.4.20/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../racon_1.4.20-1_source.changes +hostname: Name or service not known +I: Running cd /build/racon-1.4.20/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../racon_1.4.20-1_source.changes dpkg-buildpackage: info: source package racon dpkg-buildpackage: info: source version 1.4.20-1 dpkg-buildpackage: info: source distribution unstable @@ -587,7 +658,7 @@ sed -i 's/-lpthread/-pthread/' obj-*/CMakeFiles/racon_test.dir/link.txt make[1]: Leaving directory '/build/racon-1.4.20' dh_auto_build -O--buildsystem=cmake - cd obj-arm-linux-gnueabihf && make -j3 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-arm-linux-gnueabihf && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/racon-1.4.20/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/racon-1.4.20 -B/build/racon-1.4.20/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/racon-1.4.20/obj-arm-linux-gnueabihf/CMakeFiles /build/racon-1.4.20/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks @@ -599,32 +670,30 @@ cd /build/racon-1.4.20/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/racon-1.4.20 /build/racon-1.4.20 /build/racon-1.4.20/obj-arm-linux-gnueabihf /build/racon-1.4.20/obj-arm-linux-gnueabihf /build/racon-1.4.20/obj-arm-linux-gnueabihf/CMakeFiles/racon_test.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/racon-1.4.20/obj-arm-linux-gnueabihf' cd /build/racon-1.4.20/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/racon-1.4.20 /build/racon-1.4.20 /build/racon-1.4.20/obj-arm-linux-gnueabihf /build/racon-1.4.20/obj-arm-linux-gnueabihf /build/racon-1.4.20/obj-arm-linux-gnueabihf/CMakeFiles/racon.dir/DependInfo.cmake --color= -Dependee "/build/racon-1.4.20/obj-arm-linux-gnueabihf/CMakeFiles/racon_test.dir/DependInfo.cmake" is newer than depender "/build/racon-1.4.20/obj-arm-linux-gnueabihf/CMakeFiles/racon_test.dir/depend.internal". -Dependee "/build/racon-1.4.20/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/racon-1.4.20/obj-arm-linux-gnueabihf/CMakeFiles/racon_test.dir/depend.internal". Dependee "/build/racon-1.4.20/obj-arm-linux-gnueabihf/CMakeFiles/racon.dir/DependInfo.cmake" is newer than depender "/build/racon-1.4.20/obj-arm-linux-gnueabihf/CMakeFiles/racon.dir/depend.internal". Dependee "/build/racon-1.4.20/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/racon-1.4.20/obj-arm-linux-gnueabihf/CMakeFiles/racon.dir/depend.internal". +Dependee "/build/racon-1.4.20/obj-arm-linux-gnueabihf/CMakeFiles/racon_test.dir/DependInfo.cmake" is newer than depender "/build/racon-1.4.20/obj-arm-linux-gnueabihf/CMakeFiles/racon_test.dir/depend.internal". +Dependee "/build/racon-1.4.20/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/racon-1.4.20/obj-arm-linux-gnueabihf/CMakeFiles/racon_test.dir/depend.internal". Scanning dependencies of target racon Scanning dependencies of target racon_test make[3]: Leaving directory '/build/racon-1.4.20/obj-arm-linux-gnueabihf' +make -f CMakeFiles/racon.dir/build.make CMakeFiles/racon.dir/build make[3]: Leaving directory '/build/racon-1.4.20/obj-arm-linux-gnueabihf' make -f CMakeFiles/racon_test.dir/build.make CMakeFiles/racon_test.dir/build -make -f CMakeFiles/racon.dir/build.make CMakeFiles/racon.dir/build make[3]: Entering directory '/build/racon-1.4.20/obj-arm-linux-gnueabihf' make[3]: Entering directory '/build/racon-1.4.20/obj-arm-linux-gnueabihf' -[ 21%] Building CXX object CMakeFiles/racon.dir/src/main.cpp.o -[ 21%] Building CXX object CMakeFiles/racon_test.dir/test/racon_test.cpp.o -[ 21%] Building CXX object CMakeFiles/racon_test.dir/src/logger.cpp.o -/usr/bin/c++ -DRACON_VERSION=\"v1.4.20\" -I/build/racon-1.4.20/src -I/build/racon-1.4.20/obj-arm-linux-gnueabihf/config -g -O2 -fdebug-prefix-map=/build/racon-1.4.20=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -pthread -std=c++11 -o CMakeFiles/racon.dir/src/main.cpp.o -c /build/racon-1.4.20/src/main.cpp +[ 7%] Building CXX object CMakeFiles/racon.dir/src/main.cpp.o +[ 14%] Building CXX object CMakeFiles/racon_test.dir/test/racon_test.cpp.o /usr/bin/c++ -I/build/racon-1.4.20/src -I/build/racon-1.4.20/obj-arm-linux-gnueabihf/config -g -O2 -fdebug-prefix-map=/build/racon-1.4.20=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -o CMakeFiles/racon_test.dir/test/racon_test.cpp.o -c /build/racon-1.4.20/test/racon_test.cpp -/usr/bin/c++ -I/build/racon-1.4.20/src -I/build/racon-1.4.20/obj-arm-linux-gnueabihf/config -g -O2 -fdebug-prefix-map=/build/racon-1.4.20=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -o CMakeFiles/racon_test.dir/src/logger.cpp.o -c /build/racon-1.4.20/src/logger.cpp -[ 28%] Building CXX object CMakeFiles/racon_test.dir/src/polisher.cpp.o -/usr/bin/c++ -I/build/racon-1.4.20/src -I/build/racon-1.4.20/obj-arm-linux-gnueabihf/config -g -O2 -fdebug-prefix-map=/build/racon-1.4.20=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -o CMakeFiles/racon_test.dir/src/polisher.cpp.o -c /build/racon-1.4.20/src/polisher.cpp -[ 35%] Building CXX object CMakeFiles/racon.dir/src/logger.cpp.o +/usr/bin/c++ -DRACON_VERSION=\"v1.4.20\" -I/build/racon-1.4.20/src -I/build/racon-1.4.20/obj-arm-linux-gnueabihf/config -g -O2 -fdebug-prefix-map=/build/racon-1.4.20=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -pthread -std=c++11 -o CMakeFiles/racon.dir/src/main.cpp.o -c /build/racon-1.4.20/src/main.cpp +[ 21%] Building CXX object CMakeFiles/racon.dir/src/logger.cpp.o /usr/bin/c++ -DRACON_VERSION=\"v1.4.20\" -I/build/racon-1.4.20/src -I/build/racon-1.4.20/obj-arm-linux-gnueabihf/config -g -O2 -fdebug-prefix-map=/build/racon-1.4.20=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -pthread -std=c++11 -o CMakeFiles/racon.dir/src/logger.cpp.o -c /build/racon-1.4.20/src/logger.cpp -[ 42%] Building CXX object CMakeFiles/racon.dir/src/polisher.cpp.o +[ 28%] Building CXX object CMakeFiles/racon.dir/src/polisher.cpp.o /usr/bin/c++ -DRACON_VERSION=\"v1.4.20\" -I/build/racon-1.4.20/src -I/build/racon-1.4.20/obj-arm-linux-gnueabihf/config -g -O2 -fdebug-prefix-map=/build/racon-1.4.20=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -pthread -std=c++11 -o CMakeFiles/racon.dir/src/polisher.cpp.o -c /build/racon-1.4.20/src/polisher.cpp -[ 50%] Building CXX object CMakeFiles/racon_test.dir/src/overlap.cpp.o -/usr/bin/c++ -I/build/racon-1.4.20/src -I/build/racon-1.4.20/obj-arm-linux-gnueabihf/config -g -O2 -fdebug-prefix-map=/build/racon-1.4.20=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -o CMakeFiles/racon_test.dir/src/overlap.cpp.o -c /build/racon-1.4.20/src/overlap.cpp +[ 35%] Building CXX object CMakeFiles/racon.dir/src/overlap.cpp.o +/usr/bin/c++ -DRACON_VERSION=\"v1.4.20\" -I/build/racon-1.4.20/src -I/build/racon-1.4.20/obj-arm-linux-gnueabihf/config -g -O2 -fdebug-prefix-map=/build/racon-1.4.20=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -pthread -std=c++11 -o CMakeFiles/racon.dir/src/overlap.cpp.o -c /build/racon-1.4.20/src/overlap.cpp +[ 42%] Building CXX object CMakeFiles/racon.dir/src/sequence.cpp.o +/usr/bin/c++ -DRACON_VERSION=\"v1.4.20\" -I/build/racon-1.4.20/src -I/build/racon-1.4.20/obj-arm-linux-gnueabihf/config -g -O2 -fdebug-prefix-map=/build/racon-1.4.20=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -pthread -std=c++11 -o CMakeFiles/racon.dir/src/sequence.cpp.o -c /build/racon-1.4.20/src/sequence.cpp /build/racon-1.4.20/src/overlap.cpp: In member function 'virtual void racon::Overlap::align_overlaps(const char*, uint32_t, const char*, uint32_t)': /build/racon-1.4.20/src/overlap.cpp:219:48: warning: format '%zu' expects argument of type 'size_t', but argument 3 has type 'uint64_t' {aka 'long long unsigned int'} [-Wformat=] 219 | "edlib unable to align pair (%zu x %zu)!\n", q_id_, t_id_); @@ -638,10 +707,12 @@ | | | | unsigned int uint64_t {aka long long unsigned int} | %llu -[ 57%] Building CXX object CMakeFiles/racon_test.dir/src/sequence.cpp.o -/usr/bin/c++ -I/build/racon-1.4.20/src -I/build/racon-1.4.20/obj-arm-linux-gnueabihf/config -g -O2 -fdebug-prefix-map=/build/racon-1.4.20=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -o CMakeFiles/racon_test.dir/src/sequence.cpp.o -c /build/racon-1.4.20/src/sequence.cpp -[ 64%] Building CXX object CMakeFiles/racon_test.dir/src/window.cpp.o -/usr/bin/c++ -I/build/racon-1.4.20/src -I/build/racon-1.4.20/obj-arm-linux-gnueabihf/config -g -O2 -fdebug-prefix-map=/build/racon-1.4.20=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -o CMakeFiles/racon_test.dir/src/window.cpp.o -c /build/racon-1.4.20/src/window.cpp +[ 50%] Building CXX object CMakeFiles/racon.dir/src/window.cpp.o +/usr/bin/c++ -DRACON_VERSION=\"v1.4.20\" -I/build/racon-1.4.20/src -I/build/racon-1.4.20/obj-arm-linux-gnueabihf/config -g -O2 -fdebug-prefix-map=/build/racon-1.4.20=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -pthread -std=c++11 -o CMakeFiles/racon.dir/src/window.cpp.o -c /build/racon-1.4.20/src/window.cpp +[ 57%] Building CXX object CMakeFiles/racon_test.dir/src/logger.cpp.o +/usr/bin/c++ -I/build/racon-1.4.20/src -I/build/racon-1.4.20/obj-arm-linux-gnueabihf/config -g -O2 -fdebug-prefix-map=/build/racon-1.4.20=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -o CMakeFiles/racon_test.dir/src/logger.cpp.o -c /build/racon-1.4.20/src/logger.cpp +[ 64%] Building CXX object CMakeFiles/racon_test.dir/src/polisher.cpp.o +/usr/bin/c++ -I/build/racon-1.4.20/src -I/build/racon-1.4.20/obj-arm-linux-gnueabihf/config -g -O2 -fdebug-prefix-map=/build/racon-1.4.20=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -o CMakeFiles/racon_test.dir/src/polisher.cpp.o -c /build/racon-1.4.20/src/polisher.cpp /build/racon-1.4.20/src/window.cpp: In member function 'bool racon::Window::generate_consensus(std::shared_ptr, bool)': /build/racon-1.4.20/src/window.cpp:142:27: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'uint64_t' {aka 'long long unsigned int'} [-Wformat=] 142 | "contig %lu might be chimeric in window %u!\n", id_, rank_); @@ -649,8 +720,8 @@ | | | | long unsigned int uint64_t {aka long long unsigned int} | %llu -[ 71%] Building CXX object CMakeFiles/racon.dir/src/overlap.cpp.o -/usr/bin/c++ -DRACON_VERSION=\"v1.4.20\" -I/build/racon-1.4.20/src -I/build/racon-1.4.20/obj-arm-linux-gnueabihf/config -g -O2 -fdebug-prefix-map=/build/racon-1.4.20=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -pthread -std=c++11 -o CMakeFiles/racon.dir/src/overlap.cpp.o -c /build/racon-1.4.20/src/overlap.cpp +[ 71%] Building CXX object CMakeFiles/racon_test.dir/src/overlap.cpp.o +/usr/bin/c++ -I/build/racon-1.4.20/src -I/build/racon-1.4.20/obj-arm-linux-gnueabihf/config -g -O2 -fdebug-prefix-map=/build/racon-1.4.20=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -o CMakeFiles/racon_test.dir/src/overlap.cpp.o -c /build/racon-1.4.20/src/overlap.cpp /build/racon-1.4.20/src/overlap.cpp: In member function 'virtual void racon::Overlap::align_overlaps(const char*, uint32_t, const char*, uint32_t)': /build/racon-1.4.20/src/overlap.cpp:219:48: warning: format '%zu' expects argument of type 'size_t', but argument 3 has type 'uint64_t' {aka 'long long unsigned int'} [-Wformat=] 219 | "edlib unable to align pair (%zu x %zu)!\n", q_id_, t_id_); @@ -664,15 +735,10 @@ | | | | unsigned int uint64_t {aka long long unsigned int} | %llu -[ 78%] Linking CXX executable bin/racon_test -/usr/bin/cmake -E cmake_link_script CMakeFiles/racon_test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/racon-1.4.20=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/racon_test.dir/test/racon_test.cpp.o CMakeFiles/racon_test.dir/src/logger.cpp.o CMakeFiles/racon_test.dir/src/polisher.cpp.o CMakeFiles/racon_test.dir/src/overlap.cpp.o CMakeFiles/racon_test.dir/src/sequence.cpp.o CMakeFiles/racon_test.dir/src/window.cpp.o -o bin/racon_test -lspoa -ledlib /usr/lib/arm-linux-gnueabihf/libgtest_main.a -lz /usr/lib/arm-linux-gnueabihf/libgtest.a -pthread -[ 85%] Building CXX object CMakeFiles/racon.dir/src/sequence.cpp.o -/usr/bin/c++ -DRACON_VERSION=\"v1.4.20\" -I/build/racon-1.4.20/src -I/build/racon-1.4.20/obj-arm-linux-gnueabihf/config -g -O2 -fdebug-prefix-map=/build/racon-1.4.20=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -pthread -std=c++11 -o CMakeFiles/racon.dir/src/sequence.cpp.o -c /build/racon-1.4.20/src/sequence.cpp -make[3]: Leaving directory '/build/racon-1.4.20/obj-arm-linux-gnueabihf' -[ 85%] Built target racon_test -[ 92%] Building CXX object CMakeFiles/racon.dir/src/window.cpp.o -/usr/bin/c++ -DRACON_VERSION=\"v1.4.20\" -I/build/racon-1.4.20/src -I/build/racon-1.4.20/obj-arm-linux-gnueabihf/config -g -O2 -fdebug-prefix-map=/build/racon-1.4.20=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -pthread -std=c++11 -o CMakeFiles/racon.dir/src/window.cpp.o -c /build/racon-1.4.20/src/window.cpp +[ 78%] Building CXX object CMakeFiles/racon_test.dir/src/sequence.cpp.o +/usr/bin/c++ -I/build/racon-1.4.20/src -I/build/racon-1.4.20/obj-arm-linux-gnueabihf/config -g -O2 -fdebug-prefix-map=/build/racon-1.4.20=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -o CMakeFiles/racon_test.dir/src/sequence.cpp.o -c /build/racon-1.4.20/src/sequence.cpp +[ 85%] Building CXX object CMakeFiles/racon_test.dir/src/window.cpp.o +/usr/bin/c++ -I/build/racon-1.4.20/src -I/build/racon-1.4.20/obj-arm-linux-gnueabihf/config -g -O2 -fdebug-prefix-map=/build/racon-1.4.20=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -o CMakeFiles/racon_test.dir/src/window.cpp.o -c /build/racon-1.4.20/src/window.cpp /build/racon-1.4.20/src/window.cpp: In member function 'bool racon::Window::generate_consensus(std::shared_ptr, bool)': /build/racon-1.4.20/src/window.cpp:142:27: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'uint64_t' {aka 'long long unsigned int'} [-Wformat=] 142 | "contig %lu might be chimeric in window %u!\n", id_, rank_); @@ -680,11 +746,16 @@ | | | | long unsigned int uint64_t {aka long long unsigned int} | %llu -[100%] Linking CXX executable bin/racon +[ 92%] Linking CXX executable bin/racon /usr/bin/cmake -E cmake_link_script CMakeFiles/racon.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/racon-1.4.20=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -Wl,-z,relro -Wl,-z,now -rdynamic -pthread CMakeFiles/racon.dir/src/main.cpp.o CMakeFiles/racon.dir/src/logger.cpp.o CMakeFiles/racon.dir/src/polisher.cpp.o CMakeFiles/racon.dir/src/overlap.cpp.o CMakeFiles/racon.dir/src/sequence.cpp.o CMakeFiles/racon.dir/src/window.cpp.o -o bin/racon -lspoa -ledlib -lz make[3]: Leaving directory '/build/racon-1.4.20/obj-arm-linux-gnueabihf' -[100%] Built target racon +[ 92%] Built target racon +[100%] Linking CXX executable bin/racon_test +/usr/bin/cmake -E cmake_link_script CMakeFiles/racon_test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/racon-1.4.20=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/racon_test.dir/test/racon_test.cpp.o CMakeFiles/racon_test.dir/src/logger.cpp.o CMakeFiles/racon_test.dir/src/polisher.cpp.o CMakeFiles/racon_test.dir/src/overlap.cpp.o CMakeFiles/racon_test.dir/src/sequence.cpp.o CMakeFiles/racon_test.dir/src/window.cpp.o -o bin/racon_test -lspoa -ledlib /usr/lib/arm-linux-gnueabihf/libgtest_main.a -lz /usr/lib/arm-linux-gnueabihf/libgtest.a -pthread +make[3]: Leaving directory '/build/racon-1.4.20/obj-arm-linux-gnueabihf' +[100%] Built target racon_test make[2]: Leaving directory '/build/racon-1.4.20/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_start /build/racon-1.4.20/obj-arm-linux-gnueabihf/CMakeFiles 0 make[1]: Leaving directory '/build/racon-1.4.20/obj-arm-linux-gnueabihf' @@ -696,7 +767,7 @@ [----------] Global test environment set-up. [----------] 5 tests from RaconInitializeTest [ RUN ] RaconInitializeTest.PolisherTypeError -[ OK ] RaconInitializeTest.PolisherTypeError (2 ms) +[ OK ] RaconInitializeTest.PolisherTypeError (1 ms) [ RUN ] RaconInitializeTest.WindowLengthError [ OK ] RaconInitializeTest.WindowLengthError (2 ms) [ RUN ] RaconInitializeTest.SequencesPathExtensionError @@ -704,111 +775,111 @@ [ RUN ] RaconInitializeTest.OverlapsPathExtensionError [ OK ] RaconInitializeTest.OverlapsPathExtensionError (6 ms) [ RUN ] RaconInitializeTest.TargetPathExtensionError -[ OK ] RaconInitializeTest.TargetPathExtensionError (7 ms) -[----------] 5 tests from RaconInitializeTest (20 ms total) +[ OK ] RaconInitializeTest.TargetPathExtensionError (6 ms) +[----------] 5 tests from RaconInitializeTest (17 ms total) [----------] 10 tests from RaconPolishingTest [ RUN ] RaconPolishingTest.ConsensusWithQualities -[racon::Polisher::initialize] loaded target sequences 0.001599 s -[racon::Polisher::initialize] loaded sequences 0.088477 s -[racon::Polisher::initialize] loaded overlaps 0.000689 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.052513 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.080503 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.100507 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.136497 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.156505 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.176496 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.212507 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.244520 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.272494 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.304488 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.328489 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.360491 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.400503 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.424497 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.460494 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.496495 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.520495 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.548486 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.580501 s [racon::Polisher::initialize] aligning overlaps [====================] 0.625527 s -[racon::Polisher::initialize] transformed data into windows 0.008286 s -[racon::Polisher::polish] generating consensus [=> ] 0.538514 s [racon::Polisher::polish] generating consensus [==> ] 1.030518 s [racon::Polisher::polish] generating consensus [===> ] 1.426508 s [racon::Polisher::polish] generating consensus [====> ] 1.710516 s [racon::Polisher::polish] generating consensus [=====> ] 1.942513 s [racon::Polisher::polish] generating consensus [======> ] 2.066495 s [racon::Polisher::polish] generating consensus [=======> ] 2.238510 s [racon::Polisher::polish] generating consensus [========> ] 2.530524 s [racon::Polisher::polish] generating consensus [=========> ] 2.866505 s [racon::Polisher::polish] generating consensus [==========> ] 3.266503 s [racon::Polisher::polish] generating consensus [===========> ] 3.862510 s [racon::Polisher::polish] generating consensus [============> ] 4.558532 s [racon::Polisher::polish] generating consensus [=============> ] 5.414516 s [racon::Polisher::polish] generating consensus [==============> ] 6.398539 s [racon::Polisher::polish] generating consensus [===============> ] 6.890524 s [racon::Polisher::polish] generating consensus [================> ] 7.454515 s [racon::Polisher::polish] generating consensus [=================> ] 8.034514 s [racon::Polisher::polish] generating consensus [==================> ] 8.498511 s [racon::Polisher::polish] generating consensus [===================>] 8.962507 s [racon::Polisher::polish] generating consensus [====================] 11.265675 s -[racon::Polisher::] total = 12.021389 s -[ OK ] RaconPolishingTest.ConsensusWithQualities (12033 ms) +[racon::Polisher::initialize] loaded target sequences 0.001691 s +[racon::Polisher::initialize] loaded sequences 0.086444 s +[racon::Polisher::initialize] loaded overlaps 0.000750 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.080308 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.128298 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.136279 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.172269 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.212288 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.228269 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.268289 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.308291 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.360295 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.396279 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.412282 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.464297 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.508278 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.548287 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.596290 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.628292 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.672297 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.704279 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.778432 s [racon::Polisher::initialize] aligning overlaps [====================] 0.799540 s +[racon::Polisher::initialize] transformed data into windows 0.008304 s +[racon::Polisher::polish] generating consensus [=> ] 0.712272 s [racon::Polisher::polish] generating consensus [==> ] 1.332256 s [racon::Polisher::polish] generating consensus [===> ] 1.856257 s [racon::Polisher::polish] generating consensus [====> ] 2.248275 s [racon::Polisher::polish] generating consensus [=====> ] 2.448248 s [racon::Polisher::polish] generating consensus [======> ] 2.696248 s [racon::Polisher::polish] generating consensus [=======> ] 3.032254 s [racon::Polisher::polish] generating consensus [========> ] 3.356263 s [racon::Polisher::polish] generating consensus [=========> ] 3.804244 s [racon::Polisher::polish] generating consensus [==========> ] 4.396246 s [racon::Polisher::polish] generating consensus [===========> ] 5.256250 s [racon::Polisher::polish] generating consensus [============> ] 5.864245 s [racon::Polisher::polish] generating consensus [=============> ] 7.200244 s [racon::Polisher::polish] generating consensus [==============> ] 8.280253 s [racon::Polisher::polish] generating consensus [===============> ] 9.080239 s [racon::Polisher::polish] generating consensus [================> ] 9.756248 s [racon::Polisher::polish] generating consensus [=================> ] 10.564247 s [racon::Polisher::polish] generating consensus [==================> ] 11.328249 s [racon::Polisher::polish] generating consensus [===================>] 11.796247 s [racon::Polisher::polish] generating consensus [====================] 14.521327 s +[racon::Polisher::] total = 15.450651 s +[ OK ] RaconPolishingTest.ConsensusWithQualities (15461 ms) [ RUN ] RaconPolishingTest.ConsensusWithoutQualities -[racon::Polisher::initialize] loaded target sequences 0.001443 s -[racon::Polisher::initialize] loaded sequences 0.048916 s -[racon::Polisher::initialize] loaded overlaps 0.000857 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.043509 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.075503 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.091508 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.127496 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.151499 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.167505 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.203511 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.235507 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.263495 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.295514 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.319513 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.351495 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.391515 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.415506 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.451499 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.487512 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.511507 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.539494 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.571504 s [racon::Polisher::initialize] aligning overlaps [====================] 0.616828 s -[racon::Polisher::initialize] transformed data into windows 0.000921 s -[racon::Polisher::polish] generating consensus [=> ] 0.577609 s [racon::Polisher::polish] generating consensus [==> ] 1.253620 s [racon::Polisher::polish] generating consensus [===> ] 1.729610 s [racon::Polisher::polish] generating consensus [====> ] 2.113623 s [racon::Polisher::polish] generating consensus [=====> ] 2.337611 s [racon::Polisher::polish] generating consensus [======> ] 2.609607 s [racon::Polisher::polish] generating consensus [=======> ] 2.913611 s [racon::Polisher::polish] generating consensus [========> ] 3.317601 s [racon::Polisher::polish] generating consensus [=========> ] 3.765616 s [racon::Polisher::polish] generating consensus [==========> ] 4.445599 s [racon::Polisher::polish] generating consensus [===========> ] 5.177607 s [racon::Polisher::polish] generating consensus [============> ] 6.053612 s [racon::Polisher::polish] generating consensus [=============> ] 7.445603 s [racon::Polisher::polish] generating consensus [==============> ] 8.385610 s [racon::Polisher::polish] generating consensus [===============> ] 9.325609 s [racon::Polisher::polish] generating consensus [================> ] 10.149622 s [racon::Polisher::polish] generating consensus [=================> ] 11.021628 s [racon::Polisher::polish] generating consensus [==================> ] 11.513613 s [racon::Polisher::polish] generating consensus [===================>] 12.145616 s [racon::Polisher::polish] generating consensus [====================] 15.803298 s -[racon::Polisher::] total = 16.502079 s -[ OK ] RaconPolishingTest.ConsensusWithoutQualities (16514 ms) +[racon::Polisher::initialize] loaded target sequences 0.001524 s +[racon::Polisher::initialize] loaded sequences 0.049321 s +[racon::Polisher::initialize] loaded overlaps 0.000774 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.072476 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.128474 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.136466 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.184474 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.212479 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.228461 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.284478 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.356464 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.356499 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.380479 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.416467 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.468459 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.496460 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.520447 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.556454 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.592446 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.624474 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.656444 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.696468 s [racon::Polisher::initialize] aligning overlaps [====================] 0.746041 s +[racon::Polisher::initialize] transformed data into windows 0.001053 s +[racon::Polisher::polish] generating consensus [=> ] 0.829206 s [racon::Polisher::polish] generating consensus [==> ] 1.801200 s [racon::Polisher::polish] generating consensus [===> ] 2.417196 s [racon::Polisher::polish] generating consensus [====> ] 2.865219 s [racon::Polisher::polish] generating consensus [=====> ] 3.081193 s [racon::Polisher::polish] generating consensus [======> ] 3.421190 s [racon::Polisher::polish] generating consensus [=======> ] 3.717191 s [racon::Polisher::polish] generating consensus [========> ] 4.157222 s [racon::Polisher::polish] generating consensus [=========> ] 4.701203 s [racon::Polisher::polish] generating consensus [==========> ] 5.605193 s [racon::Polisher::polish] generating consensus [===========> ] 6.457190 s [racon::Polisher::polish] generating consensus [============> ] 7.669200 s [racon::Polisher::polish] generating consensus [=============> ] 9.389190 s [racon::Polisher::polish] generating consensus [==============> ] 10.485239 s [racon::Polisher::polish] generating consensus [===============> ] 11.693194 s [racon::Polisher::polish] generating consensus [================> ] 12.865238 s [racon::Polisher::polish] generating consensus [=================> ] 13.941203 s [racon::Polisher::polish] generating consensus [==================> ] 14.525210 s [racon::Polisher::polish] generating consensus [===================>] 15.217198 s [racon::Polisher::polish] generating consensus [====================] 19.896517 s +[racon::Polisher::] total = 20.725207 s +[ OK ] RaconPolishingTest.ConsensusWithoutQualities (20736 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments -[racon::Polisher::initialize] loaded target sequences 0.001479 s -[racon::Polisher::initialize] loaded sequences 0.083344 s -[racon::Polisher::initialize] loaded overlaps 0.040990 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.010821 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.010850 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.010867 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.010884 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.010899 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.010915 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.010930 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.010946 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.010961 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.010976 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.010991 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.011006 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.012806 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.012829 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.012846 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.012863 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.012880 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.012897 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.012915 s [racon::Polisher::initialize] aligning overlaps [====================] 0.012936 s -[racon::Polisher::initialize] transformed data into windows 0.007356 s -[racon::Polisher::polish] generating consensus [=> ] 0.542346 s [racon::Polisher::polish] generating consensus [==> ] 1.046335 s [racon::Polisher::polish] generating consensus [===> ] 1.430334 s [racon::Polisher::polish] generating consensus [====> ] 1.750369 s [racon::Polisher::polish] generating consensus [=====> ] 1.934331 s [racon::Polisher::polish] generating consensus [======> ] 2.086310 s [racon::Polisher::polish] generating consensus [=======> ] 2.262325 s [racon::Polisher::polish] generating consensus [========> ] 2.566345 s [racon::Polisher::polish] generating consensus [=========> ] 2.798309 s [racon::Polisher::polish] generating consensus [==========> ] 3.214322 s [racon::Polisher::polish] generating consensus [===========> ] 3.790315 s [racon::Polisher::polish] generating consensus [============> ] 4.422341 s [racon::Polisher::polish] generating consensus [=============> ] 5.338325 s [racon::Polisher::polish] generating consensus [==============> ] 6.306333 s [racon::Polisher::polish] generating consensus [===============> ] 6.862339 s [racon::Polisher::polish] generating consensus [================> ] 7.418325 s [racon::Polisher::polish] generating consensus [=================> ] 8.074324 s [racon::Polisher::polish] generating consensus [==================> ] 8.434338 s [racon::Polisher::polish] generating consensus [===================>] 8.838324 s [racon::Polisher::polish] generating consensus [====================] 11.003391 s -[racon::Polisher::] total = 11.182157 s -[ OK ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments (11194 ms) +[racon::Polisher::initialize] loaded target sequences 0.001478 s +[racon::Polisher::initialize] loaded sequences 0.082825 s +[racon::Polisher::initialize] loaded overlaps 0.040693 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.019458 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.019487 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.019504 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.019519 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.019533 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.019547 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.019560 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.019574 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.019588 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.025362 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.025387 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.025401 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.025415 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.025429 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.025443 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.025457 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.025471 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.025485 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.025500 s [racon::Polisher::initialize] aligning overlaps [====================] 0.025514 s +[racon::Polisher::initialize] transformed data into windows 0.007573 s +[racon::Polisher::polish] generating consensus [=> ] 0.686197 s [racon::Polisher::polish] generating consensus [==> ] 1.382198 s [racon::Polisher::polish] generating consensus [===> ] 1.926204 s [racon::Polisher::polish] generating consensus [====> ] 2.338226 s [racon::Polisher::polish] generating consensus [=====> ] 2.434194 s [racon::Polisher::polish] generating consensus [======> ] 2.706180 s [racon::Polisher::polish] generating consensus [=======> ] 2.902185 s [racon::Polisher::polish] generating consensus [========> ] 3.346221 s [racon::Polisher::polish] generating consensus [=========> ] 3.658189 s [racon::Polisher::polish] generating consensus [==========> ] 4.182190 s [racon::Polisher::polish] generating consensus [===========> ] 4.966193 s [racon::Polisher::polish] generating consensus [============> ] 5.822188 s [racon::Polisher::polish] generating consensus [=============> ] 7.034191 s [racon::Polisher::polish] generating consensus [==============> ] 8.286190 s [racon::Polisher::polish] generating consensus [===============> ] 8.870214 s [racon::Polisher::polish] generating consensus [================> ] 9.598186 s [racon::Polisher::polish] generating consensus [=================> ] 10.266183 s [racon::Polisher::polish] generating consensus [==================> ] 10.802189 s [racon::Polisher::polish] generating consensus [===================>] 11.310192 s [racon::Polisher::polish] generating consensus [====================] 14.054525 s +[racon::Polisher::] total = 14.245035 s +[ OK ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments (14254 ms) [ RUN ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments -[racon::Polisher::initialize] loaded target sequences 0.001439 s -[racon::Polisher::initialize] loaded sequences 0.048688 s -[racon::Polisher::initialize] loaded overlaps 0.041233 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.006680 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.007031 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.011346 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.011370 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.011387 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.011403 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.011419 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.011435 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.011450 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.011466 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.011481 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.011497 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.011512 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.011528 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.011543 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.011559 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.011575 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.011590 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.011605 s [racon::Polisher::initialize] aligning overlaps [====================] 0.011821 s -[racon::Polisher::initialize] transformed data into windows 0.000855 s -[racon::Polisher::polish] generating consensus [=> ] 0.542539 s [racon::Polisher::polish] generating consensus [==> ] 1.138534 s [racon::Polisher::polish] generating consensus [===> ] 1.598531 s [racon::Polisher::polish] generating consensus [====> ] 1.970544 s [racon::Polisher::polish] generating consensus [=====> ] 2.166522 s [racon::Polisher::polish] generating consensus [======> ] 2.426521 s [racon::Polisher::polish] generating consensus [=======> ] 2.674516 s [racon::Polisher::polish] generating consensus [========> ] 3.086551 s [racon::Polisher::polish] generating consensus [=========> ] 3.398517 s [racon::Polisher::polish] generating consensus [==========> ] 4.042532 s [racon::Polisher::polish] generating consensus [===========> ] 4.682526 s [racon::Polisher::polish] generating consensus [============> ] 5.458524 s [racon::Polisher::polish] generating consensus [=============> ] 6.694537 s [racon::Polisher::polish] generating consensus [==============> ] 7.666537 s [racon::Polisher::polish] generating consensus [===============> ] 8.586538 s [racon::Polisher::polish] generating consensus [================> ] 9.378531 s [racon::Polisher::polish] generating consensus [=================> ] 10.150535 s [racon::Polisher::polish] generating consensus [==================> ] 10.578533 s [racon::Polisher::polish] generating consensus [===================>] 11.014532 s [racon::Polisher::polish] generating consensus [====================] 14.064770 s -[racon::Polisher::] total = 14.193476 s -[ OK ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments (14205 ms) +[racon::Polisher::initialize] loaded target sequences 0.001483 s +[racon::Polisher::initialize] loaded sequences 0.048545 s +[racon::Polisher::initialize] loaded overlaps 0.040948 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.011003 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.011031 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.011046 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.011060 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.011074 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.011088 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.011101 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.011114 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.011128 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.016683 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.016710 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.016725 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.016739 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.016753 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.016766 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.016780 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.016793 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.016807 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.016822 s [racon::Polisher::initialize] aligning overlaps [====================] 0.016836 s +[racon::Polisher::initialize] transformed data into windows 0.000902 s +[racon::Polisher::polish] generating consensus [=> ] 0.737033 s [racon::Polisher::polish] generating consensus [==> ] 1.409040 s [racon::Polisher::polish] generating consensus [===> ] 2.161030 s [racon::Polisher::polish] generating consensus [====> ] 2.537061 s [racon::Polisher::polish] generating consensus [=====> ] 2.809029 s [racon::Polisher::polish] generating consensus [======> ] 3.105030 s [racon::Polisher::polish] generating consensus [=======> ] 3.493047 s [racon::Polisher::polish] generating consensus [========> ] 4.077060 s [racon::Polisher::polish] generating consensus [=========> ] 4.473015 s [racon::Polisher::polish] generating consensus [==========> ] 5.205043 s [racon::Polisher::polish] generating consensus [===========> ] 6.097033 s [racon::Polisher::polish] generating consensus [============> ] 7.045009 s [racon::Polisher::polish] generating consensus [=============> ] 8.653040 s [racon::Polisher::polish] generating consensus [==============> ] 9.793020 s [racon::Polisher::polish] generating consensus [===============> ] 10.893039 s [racon::Polisher::polish] generating consensus [================> ] 11.857083 s [racon::Polisher::polish] generating consensus [=================> ] 13.085034 s [racon::Polisher::polish] generating consensus [==================> ] 13.593030 s [racon::Polisher::polish] generating consensus [===================>] 14.117022 s [racon::Polisher::polish] generating consensus [====================] 17.893481 s +[racon::Polisher::] total = 18.025902 s +[ OK ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments (18036 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow -[racon::Polisher::initialize] loaded target sequences 0.001469 s -[racon::Polisher::initialize] loaded sequences 0.082901 s -[racon::Polisher::initialize] loaded overlaps 0.000635 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.048633 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.076655 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.096651 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.128618 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.152643 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.172620 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.208633 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.244638 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.272649 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.304635 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.328642 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.360617 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.404629 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.428623 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.464618 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.500632 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.528616 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.560619 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.588636 s [racon::Polisher::initialize] aligning overlaps [====================] 0.637465 s -[racon::Polisher::initialize] transformed data into windows 0.007728 s -[racon::Polisher::polish] generating consensus [=> ] 2.007305 s [racon::Polisher::polish] generating consensus [==> ] 2.007358 s [racon::Polisher::polish] generating consensus [===> ] 3.475281 s [racon::Polisher::polish] generating consensus [====> ] 3.475342 s [racon::Polisher::polish] generating consensus [=====> ] 4.003265 s [racon::Polisher::polish] generating consensus [======> ] 4.247269 s [racon::Polisher::polish] generating consensus [=======> ] 4.611281 s [racon::Polisher::polish] generating consensus [========> ] 5.219299 s [racon::Polisher::polish] generating consensus [=========> ] 5.847266 s [racon::Polisher::polish] generating consensus [==========> ] 6.835281 s [racon::Polisher::polish] generating consensus [===========> ] 8.131265 s [racon::Polisher::polish] generating consensus [============> ] 9.275271 s [racon::Polisher::polish] generating consensus [=============> ] 11.491278 s [racon::Polisher::polish] generating consensus [==============> ] 12.587287 s [racon::Polisher::polish] generating consensus [===============> ] 13.831267 s [racon::Polisher::polish] generating consensus [================> ] 14.623268 s [racon::Polisher::polish] generating consensus [=================> ] 16.015298 s [racon::Polisher::polish] generating consensus [==================> ] 16.355274 s [racon::Polisher::polish] generating consensus [===================>] 17.659261 s [racon::Polisher::polish] generating consensus [====================] 21.899587 s -[racon::Polisher::] total = 22.666021 s -[ OK ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow (22679 ms) +[racon::Polisher::initialize] loaded target sequences 0.001509 s +[racon::Polisher::initialize] loaded sequences 0.083018 s +[racon::Polisher::initialize] loaded overlaps 0.000664 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.084255 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.116244 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.156288 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.192233 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.244235 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.244272 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.284233 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.316239 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.356237 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.396247 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.424247 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.468238 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.516242 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.548233 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.604230 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.648238 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.700235 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.748242 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.772226 s [racon::Polisher::initialize] aligning overlaps [====================] 0.816035 s +[racon::Polisher::initialize] transformed data into windows 0.007955 s +[racon::Polisher::polish] generating consensus [=> ] 2.503998 s [racon::Polisher::polish] generating consensus [==> ] 2.672001 s [racon::Polisher::polish] generating consensus [===> ] 4.508035 s [racon::Polisher::polish] generating consensus [====> ] 4.508095 s [racon::Polisher::polish] generating consensus [=====> ] 5.260014 s [racon::Polisher::polish] generating consensus [======> ] 5.440004 s [racon::Polisher::polish] generating consensus [=======> ] 6.200012 s [racon::Polisher::polish] generating consensus [========> ] 6.648029 s [racon::Polisher::polish] generating consensus [=========> ] 7.692013 s [racon::Polisher::polish] generating consensus [==========> ] 8.796045 s [racon::Polisher::polish] generating consensus [===========> ] 10.380007 s [racon::Polisher::polish] generating consensus [============> ] 12.020012 s [racon::Polisher::polish] generating consensus [=============> ] 14.952006 s [racon::Polisher::polish] generating consensus [==============> ] 16.316002 s [racon::Polisher::polish] generating consensus [===============> ] 17.888009 s [racon::Polisher::polish] generating consensus [================> ] 19.004041 s [racon::Polisher::polish] generating consensus [=================> ] 20.880015 s [racon::Polisher::polish] generating consensus [==================> ] 21.264003 s [racon::Polisher::polish] generating consensus [===================>] 23.876398 s [racon::Polisher::polish] generating consensus [====================] 29.767240 s +[racon::Polisher::] total = 30.712466 s +[ OK ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow (30730 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesEditDistance -[racon::Polisher::initialize] loaded target sequences 0.001438 s -[racon::Polisher::initialize] loaded sequences 0.082670 s -[racon::Polisher::initialize] loaded overlaps 0.000598 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.050057 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.078065 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.102070 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.134035 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.161663 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.178035 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.222065 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.254054 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.278044 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.314054 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.334051 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.374057 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.414072 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.438040 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.474040 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.510055 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.538054 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.570046 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.606043 s [racon::Polisher::initialize] aligning overlaps [====================] 0.648930 s -[racon::Polisher::initialize] transformed data into windows 0.008788 s -[racon::Polisher::polish] generating consensus [=> ] 0.516149 s [racon::Polisher::polish] generating consensus [==> ] 0.992146 s [racon::Polisher::polish] generating consensus [===> ] 1.356147 s [racon::Polisher::polish] generating consensus [====> ] 1.640161 s [racon::Polisher::polish] generating consensus [=====> ] 1.864141 s [racon::Polisher::polish] generating consensus [======> ] 2.020132 s [racon::Polisher::polish] generating consensus [=======> ] 2.188129 s [racon::Polisher::polish] generating consensus [========> ] 2.472152 s [racon::Polisher::polish] generating consensus [=========> ] 2.760133 s [racon::Polisher::polish] generating consensus [==========> ] 3.148138 s [racon::Polisher::polish] generating consensus [===========> ] 3.720133 s [racon::Polisher::polish] generating consensus [============> ] 4.368148 s [racon::Polisher::polish] generating consensus [=============> ] 5.208156 s [racon::Polisher::polish] generating consensus [==============> ] 6.180153 s [racon::Polisher::polish] generating consensus [===============> ] 6.644129 s [racon::Polisher::polish] generating consensus [================> ] 7.172141 s [racon::Polisher::polish] generating consensus [=================> ] 7.732145 s [racon::Polisher::polish] generating consensus [==================> ] 8.184143 s [racon::Polisher::polish] generating consensus [===================>] 8.628136 s [racon::Polisher::polish] generating consensus [====================] 10.849107 s -[racon::Polisher::] total = 11.622705 s -[ OK ] RaconPolishingTest.ConsensusWithQualitiesEditDistance (11634 ms) +[racon::Polisher::initialize] loaded target sequences 0.001441 s +[racon::Polisher::initialize] loaded sequences 0.082492 s +[racon::Polisher::initialize] loaded overlaps 0.000607 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.106425 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.166432 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.194398 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.258399 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.306410 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.346400 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.422397 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.486392 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.542393 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.586396 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.618389 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.670407 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.758397 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.806386 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.838398 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.910393 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.946401 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.998388 s [racon::Polisher::initialize] aligning overlaps [===================>] 1.054400 s [racon::Polisher::initialize] aligning overlaps [====================] 1.123312 s +[racon::Polisher::initialize] transformed data into windows 0.008598 s +[racon::Polisher::polish] generating consensus [=> ] 1.046286 s [racon::Polisher::polish] generating consensus [==> ] 1.822296 s [racon::Polisher::polish] generating consensus [===> ] 2.518288 s [racon::Polisher::polish] generating consensus [====> ] 3.066303 s [racon::Polisher::polish] generating consensus [=====> ] 3.383371 s [racon::Polisher::polish] generating consensus [======> ] 3.786278 s [racon::Polisher::polish] generating consensus [=======> ] 4.002282 s [racon::Polisher::polish] generating consensus [========> ] 4.594332 s [racon::Polisher::polish] generating consensus [=========> ] 5.378285 s [racon::Polisher::polish] generating consensus [==========> ] 6.165718 s [racon::Polisher::polish] generating consensus [===========> ] 6.978285 s [racon::Polisher::polish] generating consensus [============> ] 8.010274 s [racon::Polisher::polish] generating consensus [=============> ] 9.650314 s [racon::Polisher::polish] generating consensus [==============> ] 10.762301 s [racon::Polisher::polish] generating consensus [===============> ] 11.726300 s [racon::Polisher::polish] generating consensus [================> ] 12.602438 s [racon::Polisher::polish] generating consensus [=================> ] 13.370290 s [racon::Polisher::polish] generating consensus [==================> ] 14.173914 s [racon::Polisher::polish] generating consensus [===================>] 14.846322 s [racon::Polisher::polish] generating consensus [====================] 18.764585 s +[racon::Polisher::] total = 20.014614 s +[ OK ] RaconPolishingTest.ConsensusWithQualitiesEditDistance (20025 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualities -[racon::Polisher::initialize] loaded target sequences 0.082709 s -[racon::Polisher::initialize] loaded sequences 0.086190 s -[racon::Polisher::initialize] loaded overlaps 0.020391 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.051051 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.079049 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.111041 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.135045 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.163037 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.183031 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.215048 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.227036 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.263039 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.303045 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.327044 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.363031 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.407048 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.443046 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.483034 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.527039 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.555035 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.607047 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.635043 s [racon::Polisher::initialize] aligning overlaps [====================] 0.723897 s -[racon::Polisher::initialize] transformed data into windows 0.012732 s -[racon::Polisher::polish] generating consensus [=> ] 0.342130 s [racon::Polisher::polish] generating consensus [==> ] 0.690182 s [racon::Polisher::polish] generating consensus [===> ] 1.034169 s [racon::Polisher::polish] generating consensus [====> ] 1.034415 s [racon::Polisher::polish] generating consensus [=====> ] 1.274172 s [racon::Polisher::polish] generating consensus [======> ] 1.434219 s [racon::Polisher::polish] generating consensus [=======> ] 1.662228 s [racon::Polisher::polish] generating consensus [========> ] 1.682270 s [racon::Polisher::polish] generating consensus [=========> ] 2.194079 s [racon::Polisher::polish] generating consensus [==========> ] 2.370059 s [racon::Polisher::polish] generating consensus [===========> ] 2.522155 s [racon::Polisher::polish] generating consensus [============> ] 2.622062 s [racon::Polisher::polish] generating consensus [=============> ] 2.802199 s [racon::Polisher::polish] generating consensus [==============> ] 2.802457 s [racon::Polisher::polish] generating consensus [===============> ] 3.274192 s [racon::Polisher::polish] generating consensus [================> ] 3.274444 s [racon::Polisher::polish] generating consensus [=================> ] 4.158197 s [racon::Polisher::polish] generating consensus [==================> ] 4.478154 s [racon::Polisher::polish] generating consensus [===================>] 4.858242 s [racon::Polisher::polish] generating consensus [====================] 5.031521 s -[racon::Polisher::] total = 5.958885 s -[ OK ] RaconPolishingTest.FragmentCorrectionWithQualities (5970 ms) +[racon::Polisher::initialize] loaded target sequences 0.086223 s +[racon::Polisher::initialize] loaded sequences 0.086884 s +[racon::Polisher::initialize] loaded overlaps 0.023637 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.117003 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.181002 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.245031 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.309017 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.365012 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.377002 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.453021 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.515846 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.541005 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.629012 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.636997 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.705009 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.773000 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.853017 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.908998 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.985002 s [racon::Polisher::initialize] aligning overlaps [=================> ] 1.028986 s [racon::Polisher::initialize] aligning overlaps [==================> ] 1.101631 s [racon::Polisher::initialize] aligning overlaps [===================>] 1.169002 s [racon::Polisher::initialize] aligning overlaps [====================] 1.302622 s +[racon::Polisher::initialize] transformed data into windows 0.013532 s +[racon::Polisher::polish] generating consensus [=> ] 0.732541 s [racon::Polisher::polish] generating consensus [==> ] 1.472507 s [racon::Polisher::polish] generating consensus [===> ] 2.180609 s [racon::Polisher::polish] generating consensus [====> ] 2.180934 s [racon::Polisher::polish] generating consensus [=====> ] 2.648633 s [racon::Polisher::polish] generating consensus [======> ] 2.904645 s [racon::Polisher::polish] generating consensus [=======> ] 3.276657 s [racon::Polisher::polish] generating consensus [========> ] 3.276982 s [racon::Polisher::polish] generating consensus [=========> ] 4.096978 s [racon::Polisher::polish] generating consensus [==========> ] 4.368469 s [racon::Polisher::polish] generating consensus [===========> ] 4.668630 s [racon::Polisher::polish] generating consensus [============> ] 4.760127 s [racon::Polisher::polish] generating consensus [=============> ] 5.080639 s [racon::Polisher::polish] generating consensus [==============> ] 5.080917 s [racon::Polisher::polish] generating consensus [===============> ] 6.025937 s [racon::Polisher::polish] generating consensus [================> ] 6.026245 s [racon::Polisher::polish] generating consensus [=================> ] 7.692650 s [racon::Polisher::polish] generating consensus [==================> ] 8.244600 s [racon::Polisher::polish] generating consensus [===================>] 9.036711 s [racon::Polisher::polish] generating consensus [====================] 9.320657 s +[racon::Polisher::] total = 10.835074 s +[ OK ] RaconPolishingTest.FragmentCorrectionWithQualities (10847 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull -[racon::Polisher::initialize] loaded target sequences 0.082573 s -[racon::Polisher::initialize] loaded sequences 0.084856 s -[racon::Polisher::initialize] loaded overlaps 0.020013 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.819579 s [racon::Polisher::initialize] aligning overlaps [==> ] 1.363572 s [racon::Polisher::initialize] aligning overlaps [===> ] 1.871584 s [racon::Polisher::initialize] aligning overlaps [====> ] 2.575589 s [racon::Polisher::initialize] aligning overlaps [=====> ] 3.127586 s [racon::Polisher::initialize] aligning overlaps [======> ] 3.615606 s [racon::Polisher::initialize] aligning overlaps [=======> ] 4.255579 s [racon::Polisher::initialize] aligning overlaps [========> ] 5.019589 s [racon::Polisher::initialize] aligning overlaps [=========> ] 5.791571 s [racon::Polisher::initialize] aligning overlaps [==========> ] 6.483591 s [racon::Polisher::initialize] aligning overlaps [===========> ] 7.047577 s [racon::Polisher::initialize] aligning overlaps [============> ] 7.831582 s [racon::Polisher::initialize] aligning overlaps [=============> ] 8.643586 s [racon::Polisher::initialize] aligning overlaps [==============> ] 9.323589 s [racon::Polisher::initialize] aligning overlaps [===============> ] 10.139569 s [racon::Polisher::initialize] aligning overlaps [================> ] 10.931571 s [racon::Polisher::initialize] aligning overlaps [=================> ] 11.651579 s [racon::Polisher::initialize] aligning overlaps [==================> ] 12.427585 s [racon::Polisher::initialize] aligning overlaps [===================>] 13.231567 s [racon::Polisher::initialize] aligning overlaps [====================] 13.984319 s -[racon::Polisher::initialize] transformed data into windows 0.213494 s -[racon::Polisher::polish] generating consensus [=> ] 17.700953 s [racon::Polisher::polish] generating consensus [==> ] 30.124955 s [racon::Polisher::polish] generating consensus [===> ] 44.257017 s [racon::Polisher::polish] generating consensus [====> ] 55.861020 s [racon::Polisher::polish] generating consensus [=====> ] 70.192962 s [racon::Polisher::polish] generating consensus [======> ] 88.760948 s [racon::Polisher::polish] generating consensus [=======> ] 107.236961 s [racon::Polisher::polish] generating consensus [========> ] 120.176964 s [racon::Polisher::polish] generating consensus [=========> ] 136.304959 s [racon::Polisher::polish] generating consensus [==========> ] 157.000963 s [racon::Polisher::polish] generating consensus [===========> ] 172.393009 s [racon::Polisher::polish] generating consensus [============> ] 188.432957 s [racon::Polisher::polish] generating consensus [=============> ] 202.472959 s [racon::Polisher::polish] generating consensus [==============> ] 218.156954 s [racon::Polisher::polish] generating consensus [===============> ] 233.896958 s [racon::Polisher::polish] generating consensus [================> ] 243.177017 s [racon::Polisher::polish] generating consensus [=================> ] 260.144971 s [racon::Polisher::polish] generating consensus [==================> ] 276.161015 s [racon::Polisher::polish] generating consensus [===================>] 291.768971 s [racon::Polisher::polish] generating consensus [====================] 306.604451 s -[racon::Polisher::] total = 320.996958 s -[ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull (321009 ms) +[racon::Polisher::initialize] loaded target sequences 0.088221 s +[racon::Polisher::initialize] loaded sequences 0.084383 s +[racon::Polisher::initialize] loaded overlaps 0.021508 s +[racon::Polisher::initialize] aligning overlaps [=> ] 1.596988 s [racon::Polisher::initialize] aligning overlaps [==> ] 2.833006 s [racon::Polisher::initialize] aligning overlaps [===> ] 3.770068 s [racon::Polisher::initialize] aligning overlaps [====> ] 4.754863 s [racon::Polisher::initialize] aligning overlaps [=====> ] 5.790114 s [racon::Polisher::initialize] aligning overlaps [======> ] 6.629010 s [racon::Polisher::initialize] aligning overlaps [=======> ] 7.673531 s [racon::Polisher::initialize] aligning overlaps [========> ] 9.173003 s [racon::Polisher::initialize] aligning overlaps [=========> ] 10.505000 s [racon::Polisher::initialize] aligning overlaps [==========> ] 11.852757 s [racon::Polisher::initialize] aligning overlaps [===========> ] 12.816999 s [racon::Polisher::initialize] aligning overlaps [============> ] 14.193004 s [racon::Polisher::initialize] aligning overlaps [=============> ] 15.689025 s [racon::Polisher::initialize] aligning overlaps [==============> ] 16.795963 s [racon::Polisher::initialize] aligning overlaps [===============> ] 18.141009 s [racon::Polisher::initialize] aligning overlaps [================> ] 19.365002 s [racon::Polisher::initialize] aligning overlaps [=================> ] 20.493016 s [racon::Polisher::initialize] aligning overlaps [==================> ] 21.713011 s [racon::Polisher::initialize] aligning overlaps [===================>] 23.021003 s [racon::Polisher::initialize] aligning overlaps [====================] 24.468263 s +[racon::Polisher::initialize] transformed data into windows 0.219615 s +[racon::Polisher::polish] generating consensus [=> ] 31.324996 s [racon::Polisher::polish] generating consensus [==> ] 52.448971 s [racon::Polisher::polish] generating consensus [===> ] 75.997053 s [racon::Polisher::polish] generating consensus [====> ] 91.305057 s [racon::Polisher::polish] generating consensus [=====> ] 109.800975 s [racon::Polisher::polish] generating consensus [======> ] 133.992985 s [racon::Polisher::polish] generating consensus [=======> ] 158.528977 s [racon::Polisher::polish] generating consensus [========> ] 176.396985 s [racon::Polisher::polish] generating consensus [=========> ] 198.520973 s [racon::Polisher::polish] generating consensus [==========> ] 220.340975 s [racon::Polisher::polish] generating consensus [===========> ] 243.064936 s [racon::Polisher::polish] generating consensus [============> ] 267.368971 s [racon::Polisher::polish] generating consensus [=============> ] 287.177002 s [racon::Polisher::polish] generating consensus [==============> ] 309.144983 s [racon::Polisher::polish] generating consensus [===============> ] 334.796978 s [racon::Polisher::polish] generating consensus [================> ] 347.169044 s [racon::Polisher::polish] generating consensus [=================> ] 369.680981 s [racon::Polisher::polish] generating consensus [==================> ] 393.641055 s [racon::Polisher::polish] generating consensus [===================>] 415.573589 s [racon::Polisher::polish] generating consensus [====================] 434.788759 s +[racon::Polisher::] total = 459.677850 s +[ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull (459693 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull -[racon::Polisher::initialize] loaded target sequences 0.049133 s -[racon::Polisher::initialize] loaded sequences 0.049094 s -[racon::Polisher::initialize] loaded overlaps 0.020145 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.783098 s [racon::Polisher::initialize] aligning overlaps [==> ] 1.327097 s [racon::Polisher::initialize] aligning overlaps [===> ] 1.811090 s [racon::Polisher::initialize] aligning overlaps [====> ] 2.499094 s [racon::Polisher::initialize] aligning overlaps [=====> ] 3.087102 s [racon::Polisher::initialize] aligning overlaps [======> ] 3.627089 s [racon::Polisher::initialize] aligning overlaps [=======> ] 4.259106 s [racon::Polisher::initialize] aligning overlaps [========> ] 5.211085 s [racon::Polisher::initialize] aligning overlaps [=========> ] 6.095090 s [racon::Polisher::initialize] aligning overlaps [==========> ] 6.787077 s [racon::Polisher::initialize] aligning overlaps [===========> ] 7.363070 s [racon::Polisher::initialize] aligning overlaps [============> ] 8.227097 s [racon::Polisher::initialize] aligning overlaps [=============> ] 9.157711 s [racon::Polisher::initialize] aligning overlaps [==============> ] 10.071076 s [racon::Polisher::initialize] aligning overlaps [===============> ] 10.971082 s [racon::Polisher::initialize] aligning overlaps [================> ] 11.835088 s [racon::Polisher::initialize] aligning overlaps [=================> ] 12.651089 s [racon::Polisher::initialize] aligning overlaps [==================> ] 13.555089 s [racon::Polisher::initialize] aligning overlaps [===================>] 14.615067 s [racon::Polisher::initialize] aligning overlaps [====================] 15.655438 s -[racon::Polisher::initialize] transformed data into windows 0.038469 s -[racon::Polisher::polish] generating consensus [=> ] 31.448560 s [racon::Polisher::polish] generating consensus [==> ] 55.901960 s [racon::Polisher::polish] generating consensus [===> ] 81.420611 s [racon::Polisher::polish] generating consensus [====> ] 102.404594 s [racon::Polisher::polish] generating consensus [=====> ] 126.852532 s [racon::Polisher::polish] generating consensus [======> ] 153.880514 s [racon::Polisher::polish] generating consensus [=======> ] 178.356532 s [racon::Polisher::polish] generating consensus [========> ] 197.872542 s [racon::Polisher::polish] generating consensus [=========> ] 222.132556 s [racon::Polisher::polish] generating consensus [==========> ] 246.324551 s [racon::Polisher::polish] generating consensus [===========> ] 266.428644 s [racon::Polisher::polish] generating consensus [============> ] 288.264565 s [racon::Polisher::polish] generating consensus [=============> ] 308.824559 s [racon::Polisher::polish] generating consensus [==============> ] 329.744549 s [racon::Polisher::polish] generating consensus [===============> ] 353.916539 s [racon::Polisher::polish] generating consensus [================> ] 367.452597 s [racon::Polisher::polish] generating consensus [=================> ] 399.101447 s [racon::Polisher::polish] generating consensus [==================> ] 427.392639 s [racon::Polisher::polish] generating consensus [===================>] 458.264541 s [racon::Polisher::polish] generating consensus [====================] 489.084828 s -[racon::Polisher::] total = 504.902414 s -[ OK ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull (504918 ms) +[racon::Polisher::initialize] loaded target sequences 0.052274 s +[racon::Polisher::initialize] loaded sequences 0.050055 s +[racon::Polisher::initialize] loaded overlaps 0.023050 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.979655 s [racon::Polisher::initialize] aligning overlaps [==> ] 1.664388 s [racon::Polisher::initialize] aligning overlaps [===> ] 2.264439 s [racon::Polisher::initialize] aligning overlaps [====> ] 3.128372 s [racon::Polisher::initialize] aligning overlaps [=====> ] 3.772378 s [racon::Polisher::initialize] aligning overlaps [======> ] 4.356370 s [racon::Polisher::initialize] aligning overlaps [=======> ] 5.088373 s [racon::Polisher::initialize] aligning overlaps [========> ] 6.028385 s [racon::Polisher::initialize] aligning overlaps [=========> ] 6.936391 s [racon::Polisher::initialize] aligning overlaps [==========> ] 7.740929 s [racon::Polisher::initialize] aligning overlaps [===========> ] 8.467417 s [racon::Polisher::initialize] aligning overlaps [============> ] 9.428398 s [racon::Polisher::initialize] aligning overlaps [=============> ] 10.492594 s [racon::Polisher::initialize] aligning overlaps [==============> ] 11.316375 s [racon::Polisher::initialize] aligning overlaps [===============> ] 12.324588 s [racon::Polisher::initialize] aligning overlaps [================> ] 13.284388 s [racon::Polisher::initialize] aligning overlaps [=================> ] 14.172401 s [racon::Polisher::initialize] aligning overlaps [==================> ] 15.136385 s [racon::Polisher::initialize] aligning overlaps [===================>] 16.160364 s [racon::Polisher::initialize] aligning overlaps [====================] 17.201343 s +[racon::Polisher::initialize] transformed data into windows 0.039572 s +[racon::Polisher::polish] generating consensus [=> ] 32.412258 s [racon::Polisher::polish] generating consensus [==> ] 58.212232 s [racon::Polisher::polish] generating consensus [===> ] 89.880324 s [racon::Polisher::polish] generating consensus [====> ] 115.724317 s [racon::Polisher::polish] generating consensus [=====> ] 147.216243 s [racon::Polisher::polish] generating consensus [======> ] 183.584238 s [racon::Polisher::polish] generating consensus [=======> ] 224.004256 s [racon::Polisher::polish] generating consensus [========> ] 251.328247 s [racon::Polisher::polish] generating consensus [=========> ] 285.508256 s [racon::Polisher::polish] generating consensus [==========> ] 327.548249 s [racon::Polisher::polish] generating consensus [===========> ] 363.119925 s [racon::Polisher::polish] generating consensus [============> ] 410.523743 s [racon::Polisher::polish] generating consensus [=============> ] 452.016250 s [racon::Polisher::polish] generating consensus [==============> ] 499.796261 s [racon::Polisher::polish] generating consensus [===============> ] 546.364260 s [racon::Polisher::polish] generating consensus [================> ] 572.596329 s [racon::Polisher::polish] generating consensus [=================> ] 630.652260 s [racon::Polisher::polish] generating consensus [==================> ] 685.352316 s [racon::Polisher::polish] generating consensus [===================>] 735.804277 s [racon::Polisher::polish] generating consensus [====================] 783.639878 s +[racon::Polisher::] total = 801.014170 s +[ OK ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull (801032 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap -[racon::Polisher::initialize] loaded target sequences 0.085686 s -[racon::Polisher::initialize] loaded sequences 0.088433 s -[racon::Polisher::initialize] loaded overlaps 0.023041 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.991899 s [racon::Polisher::initialize] aligning overlaps [==> ] 1.700069 s [racon::Polisher::initialize] aligning overlaps [===> ] 2.428532 s [racon::Polisher::initialize] aligning overlaps [====> ] 3.415121 s [racon::Polisher::initialize] aligning overlaps [=====> ] 4.060847 s [racon::Polisher::initialize] aligning overlaps [======> ] 4.692846 s [racon::Polisher::initialize] aligning overlaps [=======> ] 5.447875 s [racon::Polisher::initialize] aligning overlaps [========> ] 6.296864 s [racon::Polisher::initialize] aligning overlaps [=========> ] 7.248848 s [racon::Polisher::initialize] aligning overlaps [==========> ] 8.096857 s [racon::Polisher::initialize] aligning overlaps [===========> ] 8.796120 s [racon::Polisher::initialize] aligning overlaps [============> ] 9.752862 s [racon::Polisher::initialize] aligning overlaps [=============> ] 10.743049 s [racon::Polisher::initialize] aligning overlaps [==============> ] 11.729318 s [racon::Polisher::initialize] aligning overlaps [===============> ] 12.840855 s [racon::Polisher::initialize] aligning overlaps [================> ] 13.852853 s [racon::Polisher::initialize] aligning overlaps [=================> ] 14.864850 s [racon::Polisher::initialize] aligning overlaps [==================> ] 15.952857 s [racon::Polisher::initialize] aligning overlaps [===================>] 17.132843 s [racon::Polisher::initialize] aligning overlaps [====================] 18.208255 s -[racon::Polisher::initialize] transformed data into windows 0.228761 s -[racon::Polisher::polish] generating consensus [=> ] 26.567901 s [racon::Polisher::polish] generating consensus [==> ] 45.118220 s [racon::Polisher::polish] generating consensus [===> ] 65.494404 s [racon::Polisher::polish] generating consensus [====> ] 82.251424 s [racon::Polisher::polish] generating consensus [=====> ] 100.395367 s [racon::Polisher::polish] generating consensus [======> ] 119.163361 s [racon::Polisher::polish] generating consensus [=======> ] 138.783356 s [racon::Polisher::polish] generating consensus [========> ] 152.975429 s [racon::Polisher::polish] generating consensus [=========> ] 170.923350 s [racon::Polisher::polish] generating consensus [==========> ] 192.159372 s [racon::Polisher::polish] generating consensus [===========> ] 209.951466 s [racon::Polisher::polish] generating consensus [============> ] 229.503337 s [racon::Polisher::polish] generating consensus [=============> ] 243.675340 s [racon::Polisher::polish] generating consensus [==============> ] 258.943347 s [racon::Polisher::polish] generating consensus [===============> ] 274.767380 s [racon::Polisher::polish] generating consensus [================> ] 284.196741 s [racon::Polisher::polish] generating consensus [=================> ] 301.543359 s [racon::Polisher::polish] generating consensus [==================> ] 317.535410 s [racon::Polisher::polish] generating consensus [===================>] 333.143360 s [racon::Polisher::polish] generating consensus [====================] 347.966222 s -[racon::Polisher::] total = 366.607002 s -[ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap (366622 ms) -[----------] 10 tests from RaconPolishingTest (1286778 ms total) +[racon::Polisher::initialize] loaded target sequences 0.201488 s +[racon::Polisher::initialize] loaded sequences 0.136406 s +[racon::Polisher::initialize] loaded overlaps 0.056840 s +[racon::Polisher::initialize] aligning overlaps [=> ] 1.848533 s [racon::Polisher::initialize] aligning overlaps [==> ] 3.064535 s [racon::Polisher::initialize] aligning overlaps [===> ] 4.208555 s [racon::Polisher::initialize] aligning overlaps [====> ] 5.748525 s [racon::Polisher::initialize] aligning overlaps [=====> ] 6.896517 s [racon::Polisher::initialize] aligning overlaps [======> ] 7.824517 s [racon::Polisher::initialize] aligning overlaps [=======> ] 9.176520 s [racon::Polisher::initialize] aligning overlaps [========> ] 10.800517 s [racon::Polisher::initialize] aligning overlaps [=========> ] 12.480536 s [racon::Polisher::initialize] aligning overlaps [==========> ] 14.024551 s [racon::Polisher::initialize] aligning overlaps [===========> ] 15.272520 s [racon::Polisher::initialize] aligning overlaps [============> ] 17.016527 s [racon::Polisher::initialize] aligning overlaps [=============> ] 18.743979 s [racon::Polisher::initialize] aligning overlaps [==============> ] 20.264512 s [racon::Polisher::initialize] aligning overlaps [===============> ] 22.132512 s [racon::Polisher::initialize] aligning overlaps [================> ] 23.892534 s [racon::Polisher::initialize] aligning overlaps [=================> ] 25.536510 s [racon::Polisher::initialize] aligning overlaps [==================> ] 27.304518 s [racon::Polisher::initialize] aligning overlaps [===================>] 29.184522 s [racon::Polisher::initialize] aligning overlaps [====================] 30.876532 s +[racon::Polisher::initialize] transformed data into windows 0.336058 s +[racon::Polisher::polish] generating consensus [=> ] 43.155082 s [racon::Polisher::polish] generating consensus [==> ] 75.979061 s [racon::Polisher::polish] generating consensus [===> ] 113.283167 s [racon::Polisher::polish] generating consensus [====> ] 141.099253 s [racon::Polisher::polish] generating consensus [=====> ] 175.075030 s [racon::Polisher::polish] generating consensus [======> ] 215.327069 s [racon::Polisher::polish] generating consensus [=======> ] 254.779065 s [racon::Polisher::polish] generating consensus [========> ] 285.343061 s [racon::Polisher::polish] generating consensus [=========> ] 321.623170 s [racon::Polisher::polish] generating consensus [==========> ] 360.391082 s [racon::Polisher::polish] generating consensus [===========> ] 392.583162 s [racon::Polisher::polish] generating consensus [============> ] 429.195075 s [racon::Polisher::polish] generating consensus [=============> ] 461.455107 s [racon::Polisher::polish] generating consensus [==============> ] 497.321915 s [racon::Polisher::polish] generating consensus [===============> ] 532.995075 s [racon::Polisher::polish] generating consensus [================> ] 553.804045 s [racon::Polisher::polish] generating consensus [=================> ] 587.135092 s [racon::Polisher::polish] generating consensus [==================> ] 623.419141 s [racon::Polisher::polish] generating consensus [===================>] 658.231074 s [racon::Polisher::polish] generating consensus [====================] 692.159203 s +[racon::Polisher::] total = 723.781165 s +[ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap (723809 ms) +[----------] 10 tests from RaconPolishingTest (2114624 ms total) [----------] Global test environment tear-down -[==========] 15 tests from 2 test suites ran. (1286798 ms total) +[==========] 15 tests from 2 test suites ran. (2114642 ms total) [ PASSED ] 15 tests. make[1]: Leaving directory '/build/racon-1.4.20' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake dh_auto_install -O--buildsystem=cmake - cd obj-arm-linux-gnueabihf && make -j3 install DESTDIR=/build/racon-1.4.20/debian/racon AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-arm-linux-gnueabihf && make -j4 install DESTDIR=/build/racon-1.4.20/debian/racon AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/racon-1.4.20/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/racon-1.4.20 -B/build/racon-1.4.20/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -837,8 +908,8 @@ dh_strip -a -O--buildsystem=cmake dh_makeshlibs -a -O--buildsystem=cmake dh_shlibdeps -a -O--buildsystem=cmake -dpkg-shlibdeps: warning: debian/racon/usr/bin/racon contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/racon/usr/lib/racon/racon_test contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/racon/usr/bin/racon contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dh_installdeb -O--buildsystem=cmake dh_gencontrol -O--buildsystem=cmake dh_md5sums -O--buildsystem=cmake @@ -852,12 +923,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3090/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3090/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/13215 and its subdirectories -I: Current time: Thu Jul 22 02:51:44 -12 2021 -I: pbuilder-time-stamp: 1626965504 +I: removing directory /srv/workspace/pbuilder/3090 and its subdirectories +I: Current time: Fri Jul 23 05:29:33 +14 2021 +I: pbuilder-time-stamp: 1626967773