Diff of the two buildlogs: -- --- b1/build.log 2021-09-24 08:52:31.542662080 +0000 +++ b2/build.log 2021-09-24 09:00:57.544447392 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Sep 23 20:40:09 -12 2021 -I: pbuilder-time-stamp: 1632472809 +I: Current time: Fri Sep 24 22:53:01 +14 2021 +I: pbuilder-time-stamp: 1632473581 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration @@ -16,8 +16,8 @@ I: copying [./sibelia_3.0.7+dfsg-3.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' -gpgv: keyblock resource '/tmp/dpkg-verify-sig.dUN8iGDm/trustedkeys.kbx': General error -gpgv: Signature made Mon Apr 13 20:37:29 2020 -12 +gpgv: keyblock resource '/tmp/dpkg-verify-sig.SFRshFs3/trustedkeys.kbx': General error +gpgv: Signature made Tue Apr 14 22:37:29 2020 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tillea@rki.de" gpgv: Can't check signature: No public key @@ -32,135 +32,169 @@ dpkg-source: info: applying 2to3.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/5638/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/32040/tmp/hooks/D01_modify_environment starting +debug: Running on virt32c. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/32040/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/32040/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=5' - DISTRIBUTION='' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.1.4(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=4' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='d7a67af166f94fee99627927272d7c02' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='5638' - PS1='# ' - PS2='> ' + INVOCATION_ID=20a553bf88a540ca8d3370a6d452f755 + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=32040 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.53ZxGQj1e8/pbuilderrc_8yYQ --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.53ZxGQj1e8/b1 --logfile b1/build.log sibelia_3.0.7+dfsg-3.dsc' - SUDO_GID='114' - SUDO_UID='109' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:8000/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.53ZxGQj1e8/pbuilderrc_iLpK --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.53ZxGQj1e8/b2 --logfile b2/build.log sibelia_3.0.7+dfsg-3.dsc' + SUDO_GID=113 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:8000/ I: uname -a - Linux ff64a 5.10.0-8-arm64 #1 SMP Debian 5.10.46-4 (2021-08-03) aarch64 GNU/Linux + Linux i-capture-the-hostname 5.10.0-8-armmp-lpae #1 SMP Debian 5.10.46-4 (2021-08-03) armv7l GNU/Linux I: ls -l /bin total 3580 - -rwxr-xr-x 1 root root 816764 Aug 4 08:25 bash - -rwxr-xr-x 3 root root 26052 Jul 20 2020 bunzip2 - -rwxr-xr-x 3 root root 26052 Jul 20 2020 bzcat - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep - -rwxr-xr-x 3 root root 26052 Jul 20 2020 bzip2 - -rwxr-xr-x 1 root root 9636 Jul 20 2020 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore - -rwxr-xr-x 1 root root 26668 Sep 22 2020 cat - -rwxr-xr-x 1 root root 43104 Sep 22 2020 chgrp - -rwxr-xr-x 1 root root 38984 Sep 22 2020 chmod - -rwxr-xr-x 1 root root 43112 Sep 22 2020 chown - -rwxr-xr-x 1 root root 92616 Sep 22 2020 cp - -rwxr-xr-x 1 root root 75524 Dec 10 2020 dash - -rwxr-xr-x 1 root root 75880 Sep 22 2020 date - -rwxr-xr-x 1 root root 55436 Sep 22 2020 dd - -rwxr-xr-x 1 root root 59912 Sep 22 2020 df - -rwxr-xr-x 1 root root 96764 Sep 22 2020 dir - -rwxr-xr-x 1 root root 55012 Jul 28 07:09 dmesg - lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname - -rwxr-xr-x 1 root root 22508 Sep 22 2020 echo - -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep - -rwxr-xr-x 1 root root 22496 Sep 22 2020 false - -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep - -rwxr-xr-x 1 root root 47492 Jul 28 07:09 findmnt - -rwsr-xr-x 1 root root 26076 Feb 26 2021 fusermount - -rwxr-xr-x 1 root root 124508 Nov 9 2020 grep - -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip - -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe - -rwxr-xr-x 1 root root 64212 Mar 2 2021 gzip - -rwxr-xr-x 1 root root 13784 Nov 6 2019 hostname - -rwxr-xr-x 1 root root 43180 Sep 22 2020 ln - -rwxr-xr-x 1 root root 35068 Feb 7 2020 login - -rwxr-xr-x 1 root root 96764 Sep 22 2020 ls - -rwxr-xr-x 1 root root 99940 Jul 28 07:09 lsblk - -rwxr-xr-x 1 root root 51408 Sep 22 2020 mkdir - -rwxr-xr-x 1 root root 43184 Sep 22 2020 mknod - -rwxr-xr-x 1 root root 30780 Sep 22 2020 mktemp - -rwxr-xr-x 1 root root 34408 Jul 28 07:09 more - -rwsr-xr-x 1 root root 34400 Jul 28 07:09 mount - -rwxr-xr-x 1 root root 9824 Jul 28 07:09 mountpoint - -rwxr-xr-x 1 root root 88524 Sep 22 2020 mv - lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 26652 Sep 22 2020 pwd - lrwxrwxrwx 1 root root 4 Aug 4 08:25 rbash -> bash - -rwxr-xr-x 1 root root 30740 Sep 22 2020 readlink - -rwxr-xr-x 1 root root 43104 Sep 22 2020 rm - -rwxr-xr-x 1 root root 30732 Sep 22 2020 rmdir - -rwxr-xr-x 1 root root 14144 Sep 27 2020 run-parts - -rwxr-xr-x 1 root root 76012 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Sep 20 21:26 sh -> dash - -rwxr-xr-x 1 root root 22532 Sep 22 2020 sleep - -rwxr-xr-x 1 root root 55360 Sep 22 2020 stty - -rwsr-xr-x 1 root root 46704 Jul 28 07:09 su - -rwxr-xr-x 1 root root 22532 Sep 22 2020 sync - -rwxr-xr-x 1 root root 340872 Feb 16 2021 tar - -rwxr-xr-x 1 root root 9808 Sep 27 2020 tempfile - -rwxr-xr-x 1 root root 67696 Sep 22 2020 touch - -rwxr-xr-x 1 root root 22496 Sep 22 2020 true - -rwxr-xr-x 1 root root 9636 Feb 26 2021 ulockmgr_server - -rwsr-xr-x 1 root root 22108 Jul 28 07:09 umount - -rwxr-xr-x 1 root root 22520 Sep 22 2020 uname - -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress - -rwxr-xr-x 1 root root 96764 Sep 22 2020 vdir - -rwxr-xr-x 1 root root 38512 Jul 28 07:09 wdctl - lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat - -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp - -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff - -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep - -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep - -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce - -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep - -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless - -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore - -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew -I: user script /srv/workspace/pbuilder/5638/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 816764 Aug 5 10:25 bash + -rwxr-xr-x 3 root root 26052 Jul 21 2020 bunzip2 + -rwxr-xr-x 3 root root 26052 Jul 21 2020 bzcat + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep + -rwxr-xr-x 3 root root 26052 Jul 21 2020 bzip2 + -rwxr-xr-x 1 root root 9636 Jul 21 2020 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore + -rwxr-xr-x 1 root root 26668 Sep 23 2020 cat + -rwxr-xr-x 1 root root 43104 Sep 23 2020 chgrp + -rwxr-xr-x 1 root root 38984 Sep 23 2020 chmod + -rwxr-xr-x 1 root root 43112 Sep 23 2020 chown + -rwxr-xr-x 1 root root 92616 Sep 23 2020 cp + -rwxr-xr-x 1 root root 75524 Dec 11 2020 dash + -rwxr-xr-x 1 root root 75880 Sep 23 2020 date + -rwxr-xr-x 1 root root 55436 Sep 23 2020 dd + -rwxr-xr-x 1 root root 59912 Sep 23 2020 df + -rwxr-xr-x 1 root root 96764 Sep 23 2020 dir + -rwxr-xr-x 1 root root 55012 Jul 29 09:09 dmesg + lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname + -rwxr-xr-x 1 root root 22508 Sep 23 2020 echo + -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep + -rwxr-xr-x 1 root root 22496 Sep 23 2020 false + -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep + -rwxr-xr-x 1 root root 47492 Jul 29 09:09 findmnt + -rwsr-xr-x 1 root root 26076 Feb 27 2021 fusermount + -rwxr-xr-x 1 root root 124508 Nov 10 2020 grep + -rwxr-xr-x 2 root root 2346 Mar 3 2021 gunzip + -rwxr-xr-x 1 root root 6376 Mar 3 2021 gzexe + -rwxr-xr-x 1 root root 64212 Mar 3 2021 gzip + -rwxr-xr-x 1 root root 13784 Nov 8 2019 hostname + -rwxr-xr-x 1 root root 43180 Sep 23 2020 ln + -rwxr-xr-x 1 root root 35068 Feb 8 2020 login + -rwxr-xr-x 1 root root 96764 Sep 23 2020 ls + -rwxr-xr-x 1 root root 99940 Jul 29 09:09 lsblk + -rwxr-xr-x 1 root root 51408 Sep 23 2020 mkdir + -rwxr-xr-x 1 root root 43184 Sep 23 2020 mknod + -rwxr-xr-x 1 root root 30780 Sep 23 2020 mktemp + -rwxr-xr-x 1 root root 34408 Jul 29 09:09 more + -rwsr-xr-x 1 root root 34400 Jul 29 09:09 mount + -rwxr-xr-x 1 root root 9824 Jul 29 09:09 mountpoint + -rwxr-xr-x 1 root root 88524 Sep 23 2020 mv + lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 19 05:38 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 26652 Sep 23 2020 pwd + lrwxrwxrwx 1 root root 4 Aug 5 10:25 rbash -> bash + -rwxr-xr-x 1 root root 30740 Sep 23 2020 readlink + -rwxr-xr-x 1 root root 43104 Sep 23 2020 rm + -rwxr-xr-x 1 root root 30732 Sep 23 2020 rmdir + -rwxr-xr-x 1 root root 14144 Sep 28 2020 run-parts + -rwxr-xr-x 1 root root 76012 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Sep 24 22:53 sh -> bash + lrwxrwxrwx 1 root root 4 Sep 21 23:25 sh.distrib -> dash + -rwxr-xr-x 1 root root 22532 Sep 23 2020 sleep + -rwxr-xr-x 1 root root 55360 Sep 23 2020 stty + -rwsr-xr-x 1 root root 46704 Jul 29 09:09 su + -rwxr-xr-x 1 root root 22532 Sep 23 2020 sync + -rwxr-xr-x 1 root root 340872 Feb 17 2021 tar + -rwxr-xr-x 1 root root 9808 Sep 28 2020 tempfile + -rwxr-xr-x 1 root root 67696 Sep 23 2020 touch + -rwxr-xr-x 1 root root 22496 Sep 23 2020 true + -rwxr-xr-x 1 root root 9636 Feb 27 2021 ulockmgr_server + -rwsr-xr-x 1 root root 22108 Jul 29 09:09 umount + -rwxr-xr-x 1 root root 22520 Sep 23 2020 uname + -rwxr-xr-x 2 root root 2346 Mar 3 2021 uncompress + -rwxr-xr-x 1 root root 96764 Sep 23 2020 vdir + -rwxr-xr-x 1 root root 38512 Jul 29 09:09 wdctl + lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Mar 3 2021 zcat + -rwxr-xr-x 1 root root 1678 Mar 3 2021 zcmp + -rwxr-xr-x 1 root root 5880 Mar 3 2021 zdiff + -rwxr-xr-x 1 root root 29 Mar 3 2021 zegrep + -rwxr-xr-x 1 root root 29 Mar 3 2021 zfgrep + -rwxr-xr-x 1 root root 2081 Mar 3 2021 zforce + -rwxr-xr-x 1 root root 7585 Mar 3 2021 zgrep + -rwxr-xr-x 1 root root 2206 Mar 3 2021 zless + -rwxr-xr-x 1 root root 1842 Mar 3 2021 zmore + -rwxr-xr-x 1 root root 4553 Mar 3 2021 znew +I: user script /srv/workspace/pbuilder/32040/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -272,7 +306,7 @@ Get: 62 http://deb.debian.org/debian bullseye/main armhf libhts-dev armhf 1.11-4 [3819 kB] Get: 63 http://deb.debian.org/debian bullseye/main armhf libseqan2-dev all 2.4.0+dfsg-14 [1220 kB] Get: 64 http://deb.debian.org/debian bullseye/main armhf libtclap-dev armhf 1.2.3-1 [143 kB] -Fetched 41.9 MB in 5s (8516 kB/s) +Fetched 41.9 MB in 4s (11.2 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19398 files and directories currently installed.) @@ -544,7 +578,8 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/sibelia-3.0.7+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../sibelia_3.0.7+dfsg-3_source.changes +hostname: Name or service not known +I: Running cd /build/sibelia-3.0.7+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../sibelia_3.0.7+dfsg-3_source.changes dpkg-buildpackage: info: source package sibelia dpkg-buildpackage: info: source version 3.0.7+dfsg-3 dpkg-buildpackage: info: source distribution unstable @@ -583,41 +618,29 @@ -- Build files have been written to: /build/sibelia-3.0.7+dfsg/obj-arm-linux-gnueabihf dh_auto_build -O--sourcedirectory=src - cd obj-arm-linux-gnueabihf && make -j5 "INSTALL=install --strip-program=true" VERBOSE=1 -make[1]: Entering directory '/build/sibelia-3.0.7+dfsg/obj-arm-linux-gnueabihf' + cd obj-arm-linux-gnueabihf && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1 +make[1]: ingresso nella directory «/build/sibelia-3.0.7+dfsg/obj-arm-linux-gnueabihf» /usr/bin/cmake -S/build/sibelia-3.0.7+dfsg/src -B/build/sibelia-3.0.7+dfsg/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/sibelia-3.0.7+dfsg/obj-arm-linux-gnueabihf/CMakeFiles /build/sibelia-3.0.7+dfsg/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all -make[2]: Entering directory '/build/sibelia-3.0.7+dfsg/obj-arm-linux-gnueabihf' +make[2]: ingresso nella directory «/build/sibelia-3.0.7+dfsg/obj-arm-linux-gnueabihf» make -f CMakeFiles/Sibelia.dir/build.make CMakeFiles/Sibelia.dir/depend -make[3]: Entering directory '/build/sibelia-3.0.7+dfsg/obj-arm-linux-gnueabihf' +make[3]: ingresso nella directory «/build/sibelia-3.0.7+dfsg/obj-arm-linux-gnueabihf» cd /build/sibelia-3.0.7+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/sibelia-3.0.7+dfsg/src /build/sibelia-3.0.7+dfsg/src /build/sibelia-3.0.7+dfsg/obj-arm-linux-gnueabihf /build/sibelia-3.0.7+dfsg/obj-arm-linux-gnueabihf /build/sibelia-3.0.7+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/Sibelia.dir/DependInfo.cmake --color= Dependee "/build/sibelia-3.0.7+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/Sibelia.dir/DependInfo.cmake" is newer than depender "/build/sibelia-3.0.7+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/Sibelia.dir/depend.internal". Dependee "/build/sibelia-3.0.7+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/sibelia-3.0.7+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/Sibelia.dir/depend.internal". Scanning dependencies of target Sibelia -make[3]: Leaving directory '/build/sibelia-3.0.7+dfsg/obj-arm-linux-gnueabihf' +make[3]: uscita dalla directory «/build/sibelia-3.0.7+dfsg/obj-arm-linux-gnueabihf» make -f CMakeFiles/Sibelia.dir/build.make CMakeFiles/Sibelia.dir/build -make[3]: Entering directory '/build/sibelia-3.0.7+dfsg/obj-arm-linux-gnueabihf' +make[3]: ingresso nella directory «/build/sibelia-3.0.7+dfsg/obj-arm-linux-gnueabihf» [ 5%] Building CXX object CMakeFiles/Sibelia.dir/sibelia.cpp.o +[ 10%] Building CXX object CMakeFiles/Sibelia.dir/postprocessor.cpp.o /usr/bin/c++ -I/build/sibelia-3.0.7+dfsg/src/include -g -O2 -fdebug-prefix-map=/build/sibelia-3.0.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -o CMakeFiles/Sibelia.dir/sibelia.cpp.o -c /build/sibelia-3.0.7+dfsg/src/sibelia.cpp -[ 10%] Building CXX object CMakeFiles/Sibelia.dir/util.cpp.o -/usr/bin/c++ -I/build/sibelia-3.0.7+dfsg/src/include -g -O2 -fdebug-prefix-map=/build/sibelia-3.0.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -o CMakeFiles/Sibelia.dir/util.cpp.o -c /build/sibelia-3.0.7+dfsg/src/util.cpp -[ 15%] Building CXX object CMakeFiles/Sibelia.dir/postprocessor.cpp.o /usr/bin/c++ -I/build/sibelia-3.0.7+dfsg/src/include -g -O2 -fdebug-prefix-map=/build/sibelia-3.0.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -o CMakeFiles/Sibelia.dir/postprocessor.cpp.o -c /build/sibelia-3.0.7+dfsg/src/postprocessor.cpp -[ 25%] Building CXX object CMakeFiles/Sibelia.dir/outputgenerator.cpp.o -[ 25%] Building CXX object CMakeFiles/Sibelia.dir/indexedsequence.cpp.o +[ 15%] Building CXX object CMakeFiles/Sibelia.dir/indexedsequence.cpp.o /usr/bin/c++ -I/build/sibelia-3.0.7+dfsg/src/include -g -O2 -fdebug-prefix-map=/build/sibelia-3.0.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -o CMakeFiles/Sibelia.dir/indexedsequence.cpp.o -c /build/sibelia-3.0.7+dfsg/src/indexedsequence.cpp -/usr/bin/c++ -I/build/sibelia-3.0.7+dfsg/src/include -g -O2 -fdebug-prefix-map=/build/sibelia-3.0.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -o CMakeFiles/Sibelia.dir/outputgenerator.cpp.o -c /build/sibelia-3.0.7+dfsg/src/outputgenerator.cpp -In file included from /usr/include/boost/bind.hpp:30, - from /build/sibelia-3.0.7+dfsg/src/common.h:31, - from /build/sibelia-3.0.7+dfsg/src/blockinstance.h:10, - from /build/sibelia-3.0.7+dfsg/src/blockfinder.h:10, - from /build/sibelia-3.0.7+dfsg/src/util.h:10, - from /build/sibelia-3.0.7+dfsg/src/outputgenerator.h:10, - from /build/sibelia-3.0.7+dfsg/src/outputgenerator.cpp:9: -/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ - 36 | BOOST_PRAGMA_MESSAGE( - | ^~~~~~~~~~~~~~~~~~~~ +[ 20%] Building CXX object CMakeFiles/Sibelia.dir/util.cpp.o +/usr/bin/c++ -I/build/sibelia-3.0.7+dfsg/src/include -g -O2 -fdebug-prefix-map=/build/sibelia-3.0.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -o CMakeFiles/Sibelia.dir/util.cpp.o -c /build/sibelia-3.0.7+dfsg/src/util.cpp In file included from /usr/include/boost/bind.hpp:30, from /build/sibelia-3.0.7+dfsg/src/common.h:31, from /build/sibelia-3.0.7+dfsg/src/fasta.h:10, @@ -667,40 +690,6 @@ | ^~~~~~~~ In file included from /build/sibelia-3.0.7+dfsg/src/blockfinder.h:11, from /build/sibelia-3.0.7+dfsg/src/util.h:10, - from /build/sibelia-3.0.7+dfsg/src/outputgenerator.h:10, - from /build/sibelia-3.0.7+dfsg/src/outputgenerator.cpp:9: -/build/sibelia-3.0.7+dfsg/src/indexedsequence.h:37:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] - 37 | std::auto_ptr sequence_; - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /build/sibelia-3.0.7+dfsg/src/common.h:20, - from /build/sibelia-3.0.7+dfsg/src/blockinstance.h:10, - from /build/sibelia-3.0.7+dfsg/src/blockfinder.h:10, - from /build/sibelia-3.0.7+dfsg/src/util.h:10, - from /build/sibelia-3.0.7+dfsg/src/outputgenerator.h:10, - from /build/sibelia-3.0.7+dfsg/src/outputgenerator.cpp:9: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/sibelia-3.0.7+dfsg/src/blockfinder.h:11, - from /build/sibelia-3.0.7+dfsg/src/util.h:10, - from /build/sibelia-3.0.7+dfsg/src/outputgenerator.h:10, - from /build/sibelia-3.0.7+dfsg/src/outputgenerator.cpp:9: -/build/sibelia-3.0.7+dfsg/src/indexedsequence.h:38:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] - 38 | std::auto_ptr bifStorage_; - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /build/sibelia-3.0.7+dfsg/src/common.h:20, - from /build/sibelia-3.0.7+dfsg/src/blockinstance.h:10, - from /build/sibelia-3.0.7+dfsg/src/blockfinder.h:10, - from /build/sibelia-3.0.7+dfsg/src/util.h:10, - from /build/sibelia-3.0.7+dfsg/src/outputgenerator.h:10, - from /build/sibelia-3.0.7+dfsg/src/outputgenerator.cpp:9: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/sibelia-3.0.7+dfsg/src/blockfinder.h:11, - from /build/sibelia-3.0.7+dfsg/src/util.h:10, from /build/sibelia-3.0.7+dfsg/src/util.cpp:7: /build/sibelia-3.0.7+dfsg/src/indexedsequence.h:37:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 37 | std::auto_ptr sequence_; @@ -729,10 +718,8 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -[ 30%] Building CXX object CMakeFiles/Sibelia.dir/blockfinder.cpp.o -/usr/bin/c++ -I/build/sibelia-3.0.7+dfsg/src/include -g -O2 -fdebug-prefix-map=/build/sibelia-3.0.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -o CMakeFiles/Sibelia.dir/blockfinder.cpp.o -c /build/sibelia-3.0.7+dfsg/src/blockfinder.cpp -[ 35%] Building CXX object CMakeFiles/Sibelia.dir/blockinstance.cpp.o -/usr/bin/c++ -I/build/sibelia-3.0.7+dfsg/src/include -g -O2 -fdebug-prefix-map=/build/sibelia-3.0.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -o CMakeFiles/Sibelia.dir/blockinstance.cpp.o -c /build/sibelia-3.0.7+dfsg/src/blockinstance.cpp +[ 25%] Building CXX object CMakeFiles/Sibelia.dir/outputgenerator.cpp.o +/usr/bin/c++ -I/build/sibelia-3.0.7+dfsg/src/include -g -O2 -fdebug-prefix-map=/build/sibelia-3.0.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -o CMakeFiles/Sibelia.dir/outputgenerator.cpp.o -c /build/sibelia-3.0.7+dfsg/src/outputgenerator.cpp In file included from /usr/include/boost/bind.hpp:30, from /build/sibelia-3.0.7+dfsg/src/common.h:31, from /build/sibelia-3.0.7+dfsg/src/fasta.h:10, @@ -749,14 +736,8 @@ /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/boost/bind.hpp:30, - from /build/sibelia-3.0.7+dfsg/src/common.h:31, - from /build/sibelia-3.0.7+dfsg/src/blockinstance.h:10, - from /build/sibelia-3.0.7+dfsg/src/blockfinder.h:10, - from /build/sibelia-3.0.7+dfsg/src/blockfinder.cpp:7: -/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ - 36 | BOOST_PRAGMA_MESSAGE( - | ^~~~~~~~~~~~~~~~~~~~ +[ 30%] Building CXX object CMakeFiles/Sibelia.dir/blockfinder.cpp.o +/usr/bin/c++ -I/build/sibelia-3.0.7+dfsg/src/include -g -O2 -fdebug-prefix-map=/build/sibelia-3.0.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -o CMakeFiles/Sibelia.dir/blockfinder.cpp.o -c /build/sibelia-3.0.7+dfsg/src/blockfinder.cpp In file included from /build/sibelia-3.0.7+dfsg/src/blockfinder.h:11, from /build/sibelia-3.0.7+dfsg/src/util.h:10, from /build/sibelia-3.0.7+dfsg/src/sibelia.cpp:9: @@ -773,17 +754,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from /usr/include/c++/10/vector:72, - from /build/sibelia-3.0.7+dfsg/src/common.h:13, - from /build/sibelia-3.0.7+dfsg/src/blockinstance.h:10, - from /build/sibelia-3.0.7+dfsg/src/blockfinder.h:10, - from /build/sibelia-3.0.7+dfsg/src/util.h:10, - from /build/sibelia-3.0.7+dfsg/src/outputgenerator.h:10, - from /build/sibelia-3.0.7+dfsg/src/outputgenerator.cpp:9: -/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: -/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 - 426 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ In file included from /build/sibelia-3.0.7+dfsg/src/blockfinder.h:11, from /build/sibelia-3.0.7+dfsg/src/util.h:10, from /build/sibelia-3.0.7+dfsg/src/sibelia.cpp:9: @@ -814,6 +784,58 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from /usr/include/boost/bind.hpp:30, + from /build/sibelia-3.0.7+dfsg/src/common.h:31, + from /build/sibelia-3.0.7+dfsg/src/blockinstance.h:10, + from /build/sibelia-3.0.7+dfsg/src/blockfinder.h:10, + from /build/sibelia-3.0.7+dfsg/src/util.h:10, + from /build/sibelia-3.0.7+dfsg/src/outputgenerator.h:10, + from /build/sibelia-3.0.7+dfsg/src/outputgenerator.cpp:9: +/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ + 36 | BOOST_PRAGMA_MESSAGE( + | ^~~~~~~~~~~~~~~~~~~~ +In file included from /build/sibelia-3.0.7+dfsg/src/blockfinder.h:11, + from /build/sibelia-3.0.7+dfsg/src/util.h:10, + from /build/sibelia-3.0.7+dfsg/src/outputgenerator.h:10, + from /build/sibelia-3.0.7+dfsg/src/outputgenerator.cpp:9: +/build/sibelia-3.0.7+dfsg/src/indexedsequence.h:37:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] + 37 | std::auto_ptr sequence_; + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /build/sibelia-3.0.7+dfsg/src/common.h:20, + from /build/sibelia-3.0.7+dfsg/src/blockinstance.h:10, + from /build/sibelia-3.0.7+dfsg/src/blockfinder.h:10, + from /build/sibelia-3.0.7+dfsg/src/util.h:10, + from /build/sibelia-3.0.7+dfsg/src/outputgenerator.h:10, + from /build/sibelia-3.0.7+dfsg/src/outputgenerator.cpp:9: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/sibelia-3.0.7+dfsg/src/blockfinder.h:11, + from /build/sibelia-3.0.7+dfsg/src/util.h:10, + from /build/sibelia-3.0.7+dfsg/src/outputgenerator.h:10, + from /build/sibelia-3.0.7+dfsg/src/outputgenerator.cpp:9: +/build/sibelia-3.0.7+dfsg/src/indexedsequence.h:38:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] + 38 | std::auto_ptr bifStorage_; + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /build/sibelia-3.0.7+dfsg/src/common.h:20, + from /build/sibelia-3.0.7+dfsg/src/blockinstance.h:10, + from /build/sibelia-3.0.7+dfsg/src/blockfinder.h:10, + from /build/sibelia-3.0.7+dfsg/src/util.h:10, + from /build/sibelia-3.0.7+dfsg/src/outputgenerator.h:10, + from /build/sibelia-3.0.7+dfsg/src/outputgenerator.cpp:9: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from /usr/include/boost/bind.hpp:30, + from /build/sibelia-3.0.7+dfsg/src/common.h:31, + from /build/sibelia-3.0.7+dfsg/src/blockinstance.h:10, + from /build/sibelia-3.0.7+dfsg/src/blockfinder.h:10, + from /build/sibelia-3.0.7+dfsg/src/blockfinder.cpp:7: +/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ + 36 | BOOST_PRAGMA_MESSAGE( + | ^~~~~~~~~~~~~~~~~~~~ In file included from /build/sibelia-3.0.7+dfsg/src/blockfinder.h:11, from /build/sibelia-3.0.7+dfsg/src/blockfinder.cpp:7: /build/sibelia-3.0.7+dfsg/src/indexedsequence.h:37:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] @@ -840,6 +862,19 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from /usr/include/c++/10/vector:72, + from /build/sibelia-3.0.7+dfsg/src/common.h:13, + from /build/sibelia-3.0.7+dfsg/src/blockinstance.h:10, + from /build/sibelia-3.0.7+dfsg/src/blockfinder.h:10, + from /build/sibelia-3.0.7+dfsg/src/util.h:10, + from /build/sibelia-3.0.7+dfsg/src/outputgenerator.h:10, + from /build/sibelia-3.0.7+dfsg/src/outputgenerator.cpp:9: +/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: +/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 + 426 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +[ 35%] Building CXX object CMakeFiles/Sibelia.dir/blockinstance.cpp.o +/usr/bin/c++ -I/build/sibelia-3.0.7+dfsg/src/include -g -O2 -fdebug-prefix-map=/build/sibelia-3.0.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -o CMakeFiles/Sibelia.dir/blockinstance.cpp.o -c /build/sibelia-3.0.7+dfsg/src/blockinstance.cpp In file included from /usr/include/boost/bind.hpp:30, from /build/sibelia-3.0.7+dfsg/src/common.h:31, from /build/sibelia-3.0.7+dfsg/src/blockinstance.h:10, @@ -847,6 +882,13 @@ /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/vector.tcc: In member function ‘void SyntenyFinder::OutputGenerator::GenerateReport(const BlockList&, const string&) const’: +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 + 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/vector.tcc:356:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 + 356 | _M_realloc_insert(begin() + __n, std::move(__v)); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 40%] Building CXX object CMakeFiles/Sibelia.dir/bifurcationstorage.cpp.o /usr/bin/c++ -I/build/sibelia-3.0.7+dfsg/src/include -g -O2 -fdebug-prefix-map=/build/sibelia-3.0.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -o CMakeFiles/Sibelia.dir/bifurcationstorage.cpp.o -c /build/sibelia-3.0.7+dfsg/src/bifurcationstorage.cpp [ 45%] Building CXX object CMakeFiles/Sibelia.dir/bulgeremoval.cpp.o @@ -860,13 +902,6 @@ /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/vector.tcc: In member function ‘void SyntenyFinder::OutputGenerator::GenerateReport(const BlockList&, const string&) const’: -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 - 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/vector.tcc:356:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 - 356 | _M_realloc_insert(begin() + __n, std::move(__v)); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/bind.hpp:30, from /build/sibelia-3.0.7+dfsg/src/common.h:31, from /build/sibelia-3.0.7+dfsg/src/blockinstance.h:10, @@ -923,6 +958,13 @@ /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/boost/bind.hpp:30, + from /build/sibelia-3.0.7+dfsg/src/common.h:31, + from /build/sibelia-3.0.7+dfsg/src/fasta.h:10, + from /build/sibelia-3.0.7+dfsg/src/fasta.cpp:7: +/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ + 36 | BOOST_PRAGMA_MESSAGE( + | ^~~~~~~~~~~~~~~~~~~~ In file included from /build/sibelia-3.0.7+dfsg/src/blockfinder.h:11, from /build/sibelia-3.0.7+dfsg/src/edge.cpp:7: /build/sibelia-3.0.7+dfsg/src/indexedsequence.h:37:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] @@ -949,13 +991,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from /usr/include/boost/bind.hpp:30, - from /build/sibelia-3.0.7+dfsg/src/common.h:31, - from /build/sibelia-3.0.7+dfsg/src/fasta.h:10, - from /build/sibelia-3.0.7+dfsg/src/fasta.cpp:7: -/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ - 36 | BOOST_PRAGMA_MESSAGE( - | ^~~~~~~~~~~~~~~~~~~~ [ 65%] Building CXX object CMakeFiles/Sibelia.dir/serialization.cpp.o /usr/bin/c++ -I/build/sibelia-3.0.7+dfsg/src/include -g -O2 -fdebug-prefix-map=/build/sibelia-3.0.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -o CMakeFiles/Sibelia.dir/serialization.cpp.o -c /build/sibelia-3.0.7+dfsg/src/serialization.cpp [ 70%] Building CXX object CMakeFiles/Sibelia.dir/synteny.cpp.o @@ -973,13 +1008,6 @@ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/bind.hpp:30, - from /build/sibelia-3.0.7+dfsg/src/test/../common.h:31, - from /build/sibelia-3.0.7+dfsg/src/test/unrolledlisttest.h:10, - from /build/sibelia-3.0.7+dfsg/src/test/unrolledlisttest.cpp:7: -/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ - 36 | BOOST_PRAGMA_MESSAGE( - | ^~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/boost/bind.hpp:30, from /build/sibelia-3.0.7+dfsg/src/common.h:31, from /build/sibelia-3.0.7+dfsg/src/blockinstance.h:10, from /build/sibelia-3.0.7+dfsg/src/blockfinder.h:10, @@ -987,6 +1015,13 @@ /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/boost/bind.hpp:30, + from /build/sibelia-3.0.7+dfsg/src/test/../common.h:31, + from /build/sibelia-3.0.7+dfsg/src/test/unrolledlisttest.h:10, + from /build/sibelia-3.0.7+dfsg/src/test/unrolledlisttest.cpp:7: +/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ + 36 | BOOST_PRAGMA_MESSAGE( + | ^~~~~~~~~~~~~~~~~~~~ In file included from /build/sibelia-3.0.7+dfsg/src/blockfinder.h:11, from /build/sibelia-3.0.7+dfsg/src/serialization.cpp:7: /build/sibelia-3.0.7+dfsg/src/indexedsequence.h:37:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] @@ -1050,16 +1085,6 @@ /usr/bin/c++ -I/build/sibelia-3.0.7+dfsg/src/include -g -O2 -fdebug-prefix-map=/build/sibelia-3.0.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -o CMakeFiles/Sibelia.dir/stranditerator.cpp.o -c /build/sibelia-3.0.7+dfsg/src/stranditerator.cpp [ 90%] Building CXX object CMakeFiles/Sibelia.dir/vertexenumeration.cpp.o /usr/bin/c++ -I/build/sibelia-3.0.7+dfsg/src/include -g -O2 -fdebug-prefix-map=/build/sibelia-3.0.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -o CMakeFiles/Sibelia.dir/vertexenumeration.cpp.o -c /build/sibelia-3.0.7+dfsg/src/vertexenumeration.cpp -[ 95%] Building CXX object CMakeFiles/Sibelia.dir/resource.cpp.o -/usr/bin/c++ -I/build/sibelia-3.0.7+dfsg/src/include -g -O2 -fdebug-prefix-map=/build/sibelia-3.0.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -o CMakeFiles/Sibelia.dir/resource.cpp.o -c /build/sibelia-3.0.7+dfsg/src/resource.cpp -In file included from /usr/include/boost/bind.hpp:30, - from /build/sibelia-3.0.7+dfsg/src/common.h:31, - from /build/sibelia-3.0.7+dfsg/src/fasta.h:10, - from /build/sibelia-3.0.7+dfsg/src/dnasequence.h:10, - from /build/sibelia-3.0.7+dfsg/src/stranditerator.cpp:7: -/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ - 36 | BOOST_PRAGMA_MESSAGE( - | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/bind.hpp:30, from /build/sibelia-3.0.7+dfsg/src/common.h:31, from /build/sibelia-3.0.7+dfsg/src/fasta.h:10, @@ -1072,11 +1097,14 @@ | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/bind.hpp:30, from /build/sibelia-3.0.7+dfsg/src/common.h:31, - from /build/sibelia-3.0.7+dfsg/src/resource.h:6, - from /build/sibelia-3.0.7+dfsg/src/resource.cpp:6: + from /build/sibelia-3.0.7+dfsg/src/fasta.h:10, + from /build/sibelia-3.0.7+dfsg/src/dnasequence.h:10, + from /build/sibelia-3.0.7+dfsg/src/stranditerator.cpp:7: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ +[ 95%] Building CXX object CMakeFiles/Sibelia.dir/resource.cpp.o +/usr/bin/c++ -I/build/sibelia-3.0.7+dfsg/src/include -g -O2 -fdebug-prefix-map=/build/sibelia-3.0.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -o CMakeFiles/Sibelia.dir/resource.cpp.o -c /build/sibelia-3.0.7+dfsg/src/resource.cpp In file included from /build/sibelia-3.0.7+dfsg/src/vertexenumeration.cpp:7: /build/sibelia-3.0.7+dfsg/src/indexedsequence.h:37:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 37 | std::auto_ptr sequence_; @@ -1105,43 +1133,50 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from /usr/include/boost/bind.hpp:30, + from /build/sibelia-3.0.7+dfsg/src/common.h:31, + from /build/sibelia-3.0.7+dfsg/src/resource.h:6, + from /build/sibelia-3.0.7+dfsg/src/resource.cpp:6: +/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ + 36 | BOOST_PRAGMA_MESSAGE( + | ^~~~~~~~~~~~~~~~~~~~ [100%] Linking CXX executable Sibelia /usr/bin/cmake -E cmake_link_script CMakeFiles/Sibelia.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/sibelia-3.0.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/Sibelia.dir/sibelia.cpp.o CMakeFiles/Sibelia.dir/postprocessor.cpp.o CMakeFiles/Sibelia.dir/indexedsequence.cpp.o CMakeFiles/Sibelia.dir/util.cpp.o CMakeFiles/Sibelia.dir/outputgenerator.cpp.o CMakeFiles/Sibelia.dir/blockfinder.cpp.o CMakeFiles/Sibelia.dir/blockinstance.cpp.o CMakeFiles/Sibelia.dir/bifurcationstorage.cpp.o CMakeFiles/Sibelia.dir/bulgeremoval.cpp.o CMakeFiles/Sibelia.dir/dnasequence.cpp.o CMakeFiles/Sibelia.dir/edge.cpp.o CMakeFiles/Sibelia.dir/fasta.cpp.o CMakeFiles/Sibelia.dir/serialization.cpp.o CMakeFiles/Sibelia.dir/synteny.cpp.o CMakeFiles/Sibelia.dir/test/unrolledlisttest.cpp.o CMakeFiles/Sibelia.dir/platform.cpp.o CMakeFiles/Sibelia.dir/stranditerator.cpp.o CMakeFiles/Sibelia.dir/vertexenumeration.cpp.o CMakeFiles/Sibelia.dir/resource.cpp.o -o Sibelia -ldivsufsort -make[3]: Leaving directory '/build/sibelia-3.0.7+dfsg/obj-arm-linux-gnueabihf' +make[3]: uscita dalla directory «/build/sibelia-3.0.7+dfsg/obj-arm-linux-gnueabihf» [100%] Built target Sibelia -make[2]: Leaving directory '/build/sibelia-3.0.7+dfsg/obj-arm-linux-gnueabihf' +make[2]: uscita dalla directory «/build/sibelia-3.0.7+dfsg/obj-arm-linux-gnueabihf» /usr/bin/cmake -E cmake_progress_start /build/sibelia-3.0.7+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 0 -make[1]: Leaving directory '/build/sibelia-3.0.7+dfsg/obj-arm-linux-gnueabihf' +make[1]: uscita dalla directory «/build/sibelia-3.0.7+dfsg/obj-arm-linux-gnueabihf» debian/rules override_dh_auto_test -make[1]: Entering directory '/build/sibelia-3.0.7+dfsg' +make[1]: ingresso nella directory «/build/sibelia-3.0.7+dfsg» dh_auto_test --no-parallel -make[1]: Leaving directory '/build/sibelia-3.0.7+dfsg' +make[1]: uscita dalla directory «/build/sibelia-3.0.7+dfsg» create-stamp debian/debhelper-build-stamp dh_testroot -O--sourcedirectory=src dh_prep -O--sourcedirectory=src dh_auto_install -O--sourcedirectory=src - cd obj-arm-linux-gnueabihf && make -j5 install DESTDIR=/build/sibelia-3.0.7\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" -make[1]: Entering directory '/build/sibelia-3.0.7+dfsg/obj-arm-linux-gnueabihf' + cd obj-arm-linux-gnueabihf && make -j4 install DESTDIR=/build/sibelia-3.0.7\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" +make[1]: ingresso nella directory «/build/sibelia-3.0.7+dfsg/obj-arm-linux-gnueabihf» /usr/bin/cmake -S/build/sibelia-3.0.7+dfsg/src -B/build/sibelia-3.0.7+dfsg/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/sibelia-3.0.7+dfsg/obj-arm-linux-gnueabihf/CMakeFiles /build/sibelia-3.0.7+dfsg/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all -make[2]: Entering directory '/build/sibelia-3.0.7+dfsg/obj-arm-linux-gnueabihf' +make[2]: ingresso nella directory «/build/sibelia-3.0.7+dfsg/obj-arm-linux-gnueabihf» make -f CMakeFiles/Sibelia.dir/build.make CMakeFiles/Sibelia.dir/depend -make[3]: Entering directory '/build/sibelia-3.0.7+dfsg/obj-arm-linux-gnueabihf' +make[3]: ingresso nella directory «/build/sibelia-3.0.7+dfsg/obj-arm-linux-gnueabihf» cd /build/sibelia-3.0.7+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/sibelia-3.0.7+dfsg/src /build/sibelia-3.0.7+dfsg/src /build/sibelia-3.0.7+dfsg/obj-arm-linux-gnueabihf /build/sibelia-3.0.7+dfsg/obj-arm-linux-gnueabihf /build/sibelia-3.0.7+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/Sibelia.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/sibelia-3.0.7+dfsg/obj-arm-linux-gnueabihf' +make[3]: uscita dalla directory «/build/sibelia-3.0.7+dfsg/obj-arm-linux-gnueabihf» make -f CMakeFiles/Sibelia.dir/build.make CMakeFiles/Sibelia.dir/build -make[3]: Entering directory '/build/sibelia-3.0.7+dfsg/obj-arm-linux-gnueabihf' -make[3]: Nothing to be done for 'CMakeFiles/Sibelia.dir/build'. -make[3]: Leaving directory '/build/sibelia-3.0.7+dfsg/obj-arm-linux-gnueabihf' +make[3]: ingresso nella directory «/build/sibelia-3.0.7+dfsg/obj-arm-linux-gnueabihf» +make[3]: Nessuna operazione da eseguire per «CMakeFiles/Sibelia.dir/build». +make[3]: uscita dalla directory «/build/sibelia-3.0.7+dfsg/obj-arm-linux-gnueabihf» [100%] Built target Sibelia -make[2]: Leaving directory '/build/sibelia-3.0.7+dfsg/obj-arm-linux-gnueabihf' +make[2]: uscita dalla directory «/build/sibelia-3.0.7+dfsg/obj-arm-linux-gnueabihf» /usr/bin/cmake -E cmake_progress_start /build/sibelia-3.0.7+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall -make[2]: Entering directory '/build/sibelia-3.0.7+dfsg/obj-arm-linux-gnueabihf' -make[2]: Nothing to be done for 'preinstall'. -make[2]: Leaving directory '/build/sibelia-3.0.7+dfsg/obj-arm-linux-gnueabihf' +make[2]: ingresso nella directory «/build/sibelia-3.0.7+dfsg/obj-arm-linux-gnueabihf» +make[2]: Nessuna operazione da eseguire per «preinstall». +make[2]: uscita dalla directory «/build/sibelia-3.0.7+dfsg/obj-arm-linux-gnueabihf» Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" @@ -1155,67 +1190,67 @@ -- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/C-SIBELIA.md -- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/LICENSE.txt -- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples --- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/C-Sibelia --- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/C-Sibelia/Staphylococcus_aureus --- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/C-Sibelia/Staphylococcus_aureus/variant.vcf --- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/C-Sibelia/Staphylococcus_aureus/RN4220.fasta --- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/C-Sibelia/Staphylococcus_aureus/README.txt --- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/C-Sibelia/Staphylococcus_aureus/NCTC8325.fasta -- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia -- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Staphylococcus_aureus --- Installing: 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/build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Staphylococcus_aureus/genomes_permutations.txt -- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Staphylococcus_aureus/blocks_coords.txt -- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Helicobacter_pylori --- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Helicobacter_pylori/genomes_permutations.txt --- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Helicobacter_pylori/README.txt --- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Helicobacter_pylori/coverage_report.txt --- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Helicobacter_pylori/d3_blocks_diagram.html --- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Helicobacter_pylori/Helicobacter_pylori.fasta -- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Helicobacter_pylori/circos --- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Helicobacter_pylori/circos/circos.segdup.txt +-- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Helicobacter_pylori/circos/circos.highlight1.txt +-- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Helicobacter_pylori/circos/circos.png +-- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Helicobacter_pylori/circos/circos.highlight.txt -- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Helicobacter_pylori/circos/circos.highlight3.txt --- Installing: 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/build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/C-Sibelia/Staphylococcus_aureus/README.txt +-- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/C-Sibelia/Staphylococcus_aureus/variant.vcf +-- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/C-Sibelia/Staphylococcus_aureus/NCTC8325.fasta -- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/bin/C-Sibelia.py -- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/utils -- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/utils/sortsequences.py -- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/utils/hidemappedcontigs.py -- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/lib/Sibelia -make[1]: Leaving directory '/build/sibelia-3.0.7+dfsg/obj-arm-linux-gnueabihf' +make[1]: uscita dalla directory «/build/sibelia-3.0.7+dfsg/obj-arm-linux-gnueabihf» debian/rules override_dh_install -make[1]: Entering directory '/build/sibelia-3.0.7+dfsg' +make[1]: ingresso nella directory «/build/sibelia-3.0.7+dfsg» dh_install find debian -name LICENSE.txt -delete find debian -name INSTALL.md -delete -make[1]: Leaving directory '/build/sibelia-3.0.7+dfsg' +make[1]: uscita dalla directory «/build/sibelia-3.0.7+dfsg» dh_installdocs -O--sourcedirectory=src dh_installchangelogs -O--sourcedirectory=src debian/rules override_dh_installman-arch -make[1]: Entering directory '/build/sibelia-3.0.7+dfsg' +make[1]: ingresso nella directory «/build/sibelia-3.0.7+dfsg» dh_installman -a mv debian/sibelia/usr/share/man/py/man1/C-Sibelia.1 debian/sibelia/usr/share/man/man1/C-Sibelia.py.1 rm -rf debian/sibelia/usr/share/man/py -make[1]: Leaving directory '/build/sibelia-3.0.7+dfsg' +make[1]: uscita dalla directory «/build/sibelia-3.0.7+dfsg» dh_installman -O--sourcedirectory=src -Nsibelia dh_installinit -O--sourcedirectory=src dh_installsystemduser -O--sourcedirectory=src @@ -1235,9 +1270,9 @@ dh_gencontrol -O--sourcedirectory=src dh_md5sums -O--sourcedirectory=src dh_builddeb -O--sourcedirectory=src -dpkg-deb: building package 'sibelia-dbgsym' in '../sibelia-dbgsym_3.0.7+dfsg-3_armhf.deb'. -dpkg-deb: building package 'sibelia-examples' in '../sibelia-examples_3.0.7+dfsg-3_all.deb'. -dpkg-deb: building package 'sibelia' in '../sibelia_3.0.7+dfsg-3_armhf.deb'. +dpkg-deb: generazione del pacchetto "sibelia" in "../sibelia_3.0.7+dfsg-3_armhf.deb". +dpkg-deb: generazione del pacchetto "sibelia-dbgsym" in "../sibelia-dbgsym_3.0.7+dfsg-3_armhf.deb". +dpkg-deb: generazione del pacchetto "sibelia-examples" in "../sibelia-examples_3.0.7+dfsg-3_all.deb". dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../sibelia_3.0.7+dfsg-3_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -1245,12 +1280,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/32040/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/32040/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/5638 and its subdirectories -I: Current time: Thu Sep 23 20:52:27 -12 2021 -I: pbuilder-time-stamp: 1632473547 +I: removing directory /srv/workspace/pbuilder/32040 and its subdirectories +I: Current time: Fri Sep 24 23:00:53 +14 2021 +I: pbuilder-time-stamp: 1632474053