Diff of the two buildlogs:
--
--- b1/build.log 2021-06-20 00:00:01.392935759 +0000
+++ b2/build.log 2021-06-20 00:02:55.030310150 +0000
@@ -1,6 +1,6 @@
I: pbuilder: network access will be disabled during build
-I: Current time: Fri Jul 22 18:22:38 -12 2022
-I: pbuilder-time-stamp: 1658557358
+I: Current time: Sun Jun 20 14:00:06 +14 2021
+I: pbuilder-time-stamp: 1624147206
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz]
I: copying local configuration
@@ -17,8 +17,8 @@
I: copying [./dialign-t_1.0.2-13.debian.tar.xz]
I: Extracting source
gpgv: unknown type of key resource 'trustedkeys.kbx'
-gpgv: keyblock resource '/tmp/dpkg-verify-sig.tT5voByZ/trustedkeys.kbx': General error
-gpgv: Signature made Wed Jul 22 19:00:16 2020 -12
+gpgv: keyblock resource '/tmp/dpkg-verify-sig.VBq1bZqF/trustedkeys.kbx': General error
+gpgv: Signature made Thu Jul 23 21:00:16 2020 +14
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
@@ -36,137 +36,171 @@
dpkg-source: info: applying gcc10.patch
I: Not using root during the build.
I: Installing the build-deps
-I: user script /srv/workspace/pbuilder/31935/tmp/hooks/D02_print_environment starting
+I: user script /srv/workspace/pbuilder/30957/tmp/hooks/D01_modify_environment starting
+debug: Running on ionos12-i386.
+I: Changing host+domainname to test build reproducibility
+I: Adding a custom variable just for the fun of it...
+I: Changing /bin/sh to bash
+Removing 'diversion of /bin/sh to /bin/sh.distrib by dash'
+Adding 'diversion of /bin/sh to /bin/sh.distrib by bash'
+Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash'
+Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash'
+I: Setting pbuilder2's login shell to /bin/bash
+I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
+I: user script /srv/workspace/pbuilder/30957/tmp/hooks/D01_modify_environment finished
+I: user script /srv/workspace/pbuilder/30957/tmp/hooks/D02_print_environment starting
I: set
- BUILDDIR='/build'
- BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
- BUILDUSERNAME='pbuilder1'
- BUILD_ARCH='i386'
- DEBIAN_FRONTEND='noninteractive'
- DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=18'
- DISTRIBUTION=''
- HOME='/root'
- HOST_ARCH='i386'
+ BASH=/bin/sh
+ BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath
+ BASH_ALIASES=()
+ BASH_ARGC=()
+ BASH_ARGV=()
+ BASH_CMDS=()
+ BASH_LINENO=([0]="12" [1]="0")
+ BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment")
+ BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="i686-pc-linux-gnu")
+ BASH_VERSION='5.1.4(1)-release'
+ BUILDDIR=/build
+ BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
+ BUILDUSERNAME=pbuilder2
+ BUILD_ARCH=i386
+ DEBIAN_FRONTEND=noninteractive
+ DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=10'
+ DIRSTACK=()
+ DISTRIBUTION=
+ EUID=0
+ FUNCNAME=([0]="Echo" [1]="main")
+ GROUPS=()
+ HOME=/root
+ HOSTNAME=i-capture-the-hostname
+ HOSTTYPE=i686
+ HOST_ARCH=i386
IFS='
'
- INVOCATION_ID='c4119ceb4a954da58fa9a283b12879d2'
- LANG='C'
- LANGUAGE='en_US:en'
- LC_ALL='C'
- LD_LIBRARY_PATH='/usr/lib/libeatmydata'
- LD_PRELOAD='libeatmydata.so'
- MAIL='/var/mail/root'
- OPTIND='1'
- PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
- PBCURRENTCOMMANDLINEOPERATION='build'
- PBUILDER_OPERATION='build'
- PBUILDER_PKGDATADIR='/usr/share/pbuilder'
- PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
- PBUILDER_SYSCONFDIR='/etc'
- PPID='31935'
- PS1='# '
- PS2='> '
+ INVOCATION_ID=ea55a252ec6b41ca9131214407dc7c60
+ LANG=C
+ LANGUAGE=de_CH:de
+ LC_ALL=C
+ LD_LIBRARY_PATH=/usr/lib/libeatmydata
+ LD_PRELOAD=libeatmydata.so
+ MACHTYPE=i686-pc-linux-gnu
+ MAIL=/var/mail/root
+ OPTERR=1
+ OPTIND=1
+ OSTYPE=linux-gnu
+ PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
+ PBCURRENTCOMMANDLINEOPERATION=build
+ PBUILDER_OPERATION=build
+ PBUILDER_PKGDATADIR=/usr/share/pbuilder
+ PBUILDER_PKGLIBDIR=/usr/lib/pbuilder
+ PBUILDER_SYSCONFDIR=/etc
+ PIPESTATUS=([0]="0")
+ POSIXLY_CORRECT=y
+ PPID=30957
PS4='+ '
- PWD='/'
- SHELL='/bin/bash'
- SHLVL='2'
- SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.MgcVpOK5c8/pbuilderrc_UstH --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.MgcVpOK5c8/b1 --logfile b1/build.log dialign-t_1.0.2-13.dsc'
- SUDO_GID='112'
- SUDO_UID='107'
- SUDO_USER='jenkins'
- TERM='unknown'
- TZ='/usr/share/zoneinfo/Etc/GMT+12'
- USER='root'
- _='/usr/bin/systemd-run'
- http_proxy='http://85.184.249.68:3128'
+ PWD=/
+ SHELL=/bin/bash
+ SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix
+ SHLVL=3
+ SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.MgcVpOK5c8/pbuilderrc_FmZB --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.MgcVpOK5c8/b2 --logfile b2/build.log --extrapackages usrmerge dialign-t_1.0.2-13.dsc'
+ SUDO_GID=112
+ SUDO_UID=107
+ SUDO_USER=jenkins
+ TERM=unknown
+ TZ=/usr/share/zoneinfo/Etc/GMT-14
+ UID=0
+ USER=root
+ _='I: set'
+ http_proxy=http://78.137.99.97:3128
I: uname -a
- Linux ionos6-i386 4.19.0-17-amd64 #1 SMP Debian 4.19.194-1 (2021-06-10) x86_64 GNU/Linux
+ Linux i-capture-the-hostname 4.19.0-17-686-pae #1 SMP Debian 4.19.194-1 (2021-06-10) i686 GNU/Linux
I: ls -l /bin
total 5776
- -rwxr-xr-x 1 root root 1367848 Feb 24 2021 bash
- -rwxr-xr-x 3 root root 38280 Jul 20 2020 bunzip2
- -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzcat
- lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff
- -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff
- lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep
- -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe
- lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep
- -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep
- -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzip2
- -rwxr-xr-x 1 root root 17768 Jul 20 2020 bzip2recover
- lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore
- -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore
- -rwxr-xr-x 1 root root 38824 Sep 22 2020 cat
- -rwxr-xr-x 1 root root 71624 Sep 22 2020 chgrp
- -rwxr-xr-x 1 root root 67528 Sep 22 2020 chmod
- -rwxr-xr-x 1 root root 75752 Sep 22 2020 chown
- -rwxr-xr-x 1 root root 157960 Sep 22 2020 cp
- -rwxr-xr-x 1 root root 128724 Dec 10 2020 dash
- -rwxr-xr-x 1 root root 124904 Sep 22 2020 date
- -rwxr-xr-x 1 root root 92172 Sep 22 2020 dd
- -rwxr-xr-x 1 root root 100752 Sep 22 2020 df
- -rwxr-xr-x 1 root root 153964 Sep 22 2020 dir
- -rwxr-xr-x 1 root root 83644 Feb 7 2021 dmesg
- lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname
- lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname
- -rwxr-xr-x 1 root root 34664 Sep 22 2020 echo
- -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep
- -rwxr-xr-x 1 root root 34664 Sep 22 2020 false
- -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep
- -rwxr-xr-x 1 root root 71928 Feb 7 2021 findmnt
- -rwsr-xr-x 1 root root 30112 Feb 26 2021 fusermount
- -rwxr-xr-x 1 root root 210488 Nov 9 2020 grep
- -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip
- -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe
- -rwxr-xr-x 1 root root 100952 Mar 2 2021 gzip
- -rwxr-xr-x 1 root root 21916 Nov 6 2019 hostname
- -rwxr-xr-x 1 root root 83980 Sep 22 2020 ln
- -rwxr-xr-x 1 root root 55572 Feb 7 2020 login
- -rwxr-xr-x 1 root root 153964 Sep 22 2020 ls
- -rwxr-xr-x 1 root root 153124 Feb 7 2021 lsblk
- -rwxr-xr-x 1 root root 96328 Sep 22 2020 mkdir
- -rwxr-xr-x 1 root root 79912 Sep 22 2020 mknod
- -rwxr-xr-x 1 root root 47048 Sep 22 2020 mktemp
- -rwxr-xr-x 1 root root 58920 Feb 7 2021 more
- -rwsr-xr-x 1 root root 50720 Feb 7 2021 mount
- -rwxr-xr-x 1 root root 13856 Feb 7 2021 mountpoint
- -rwxr-xr-x 1 root root 157996 Sep 22 2020 mv
- lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname
- lrwxrwxrwx 1 root root 14 Apr 18 2021 pidof -> /sbin/killall5
- -rwxr-xr-x 1 root root 38824 Sep 22 2020 pwd
- lrwxrwxrwx 1 root root 4 Feb 24 2021 rbash -> bash
- -rwxr-xr-x 1 root root 46984 Sep 22 2020 readlink
- -rwxr-xr-x 1 root root 75720 Sep 22 2020 rm
- -rwxr-xr-x 1 root root 46984 Sep 22 2020 rmdir
- -rwxr-xr-x 1 root root 22292 Sep 27 2020 run-parts
- -rwxr-xr-x 1 root root 125036 Dec 22 2018 sed
- lrwxrwxrwx 1 root root 4 Jul 22 03:48 sh -> dash
- -rwxr-xr-x 1 root root 34696 Sep 22 2020 sleep
- -rwxr-xr-x 1 root root 83880 Sep 22 2020 stty
- -rwsr-xr-x 1 root root 79396 Feb 7 2021 su
- -rwxr-xr-x 1 root root 34696 Sep 22 2020 sync
- -rwxr-xr-x 1 root root 602584 Feb 16 2021 tar
- -rwxr-xr-x 1 root root 13860 Sep 27 2020 tempfile
- -rwxr-xr-x 1 root root 108520 Sep 22 2020 touch
- -rwxr-xr-x 1 root root 34664 Sep 22 2020 true
- -rwxr-xr-x 1 root root 17768 Feb 26 2021 ulockmgr_server
- -rwsr-xr-x 1 root root 30236 Feb 7 2021 umount
- -rwxr-xr-x 1 root root 34664 Sep 22 2020 uname
- -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress
- -rwxr-xr-x 1 root root 153964 Sep 22 2020 vdir
- -rwxr-xr-x 1 root root 63024 Feb 7 2021 wdctl
- lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname
- -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat
- -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp
- -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff
- -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep
- -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep
- -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce
- -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep
- -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless
- -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore
- -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew
-I: user script /srv/workspace/pbuilder/31935/tmp/hooks/D02_print_environment finished
+ -rwxr-xr-x 1 root root 1367848 Feb 25 10:57 bash
+ -rwxr-xr-x 3 root root 38280 Jul 21 2020 bunzip2
+ -rwxr-xr-x 3 root root 38280 Jul 21 2020 bzcat
+ lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff
+ -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff
+ lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep
+ -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe
+ lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep
+ -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep
+ -rwxr-xr-x 3 root root 38280 Jul 21 2020 bzip2
+ -rwxr-xr-x 1 root root 17768 Jul 21 2020 bzip2recover
+ lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore
+ -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore
+ -rwxr-xr-x 1 root root 38824 Sep 23 2020 cat
+ -rwxr-xr-x 1 root root 71624 Sep 23 2020 chgrp
+ -rwxr-xr-x 1 root root 67528 Sep 23 2020 chmod
+ -rwxr-xr-x 1 root root 75752 Sep 23 2020 chown
+ -rwxr-xr-x 1 root root 157960 Sep 23 2020 cp
+ -rwxr-xr-x 1 root root 128724 Dec 11 2020 dash
+ -rwxr-xr-x 1 root root 124904 Sep 23 2020 date
+ -rwxr-xr-x 1 root root 92172 Sep 23 2020 dd
+ -rwxr-xr-x 1 root root 100752 Sep 23 2020 df
+ -rwxr-xr-x 1 root root 153964 Sep 23 2020 dir
+ -rwxr-xr-x 1 root root 83644 Feb 8 04:38 dmesg
+ lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname
+ lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname
+ -rwxr-xr-x 1 root root 34664 Sep 23 2020 echo
+ -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep
+ -rwxr-xr-x 1 root root 34664 Sep 23 2020 false
+ -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep
+ -rwxr-xr-x 1 root root 71928 Feb 8 04:38 findmnt
+ -rwsr-xr-x 1 root root 30112 Feb 27 06:12 fusermount
+ -rwxr-xr-x 1 root root 210488 Nov 10 2020 grep
+ -rwxr-xr-x 2 root root 2346 Mar 3 13:30 gunzip
+ -rwxr-xr-x 1 root root 6376 Mar 3 13:30 gzexe
+ -rwxr-xr-x 1 root root 100952 Mar 3 13:30 gzip
+ -rwxr-xr-x 1 root root 21916 Nov 8 2019 hostname
+ -rwxr-xr-x 1 root root 83980 Sep 23 2020 ln
+ -rwxr-xr-x 1 root root 55572 Feb 8 2020 login
+ -rwxr-xr-x 1 root root 153964 Sep 23 2020 ls
+ -rwxr-xr-x 1 root root 153124 Feb 8 04:38 lsblk
+ -rwxr-xr-x 1 root root 96328 Sep 23 2020 mkdir
+ -rwxr-xr-x 1 root root 79912 Sep 23 2020 mknod
+ -rwxr-xr-x 1 root root 47048 Sep 23 2020 mktemp
+ -rwxr-xr-x 1 root root 58920 Feb 8 04:38 more
+ -rwsr-xr-x 1 root root 50720 Feb 8 04:38 mount
+ -rwxr-xr-x 1 root root 13856 Feb 8 04:38 mountpoint
+ -rwxr-xr-x 1 root root 157996 Sep 23 2020 mv
+ lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname
+ lrwxrwxrwx 1 root root 14 Apr 19 05:38 pidof -> /sbin/killall5
+ -rwxr-xr-x 1 root root 38824 Sep 23 2020 pwd
+ lrwxrwxrwx 1 root root 4 Feb 25 10:57 rbash -> bash
+ -rwxr-xr-x 1 root root 46984 Sep 23 2020 readlink
+ -rwxr-xr-x 1 root root 75720 Sep 23 2020 rm
+ -rwxr-xr-x 1 root root 46984 Sep 23 2020 rmdir
+ -rwxr-xr-x 1 root root 22292 Sep 28 2020 run-parts
+ -rwxr-xr-x 1 root root 125036 Dec 23 2018 sed
+ lrwxrwxrwx 1 root root 4 Jun 20 14:01 sh -> bash
+ lrwxrwxrwx 1 root root 4 Jun 18 23:27 sh.distrib -> dash
+ -rwxr-xr-x 1 root root 34696 Sep 23 2020 sleep
+ -rwxr-xr-x 1 root root 83880 Sep 23 2020 stty
+ -rwsr-xr-x 1 root root 79396 Feb 8 04:38 su
+ -rwxr-xr-x 1 root root 34696 Sep 23 2020 sync
+ -rwxr-xr-x 1 root root 602584 Feb 17 23:55 tar
+ -rwxr-xr-x 1 root root 13860 Sep 28 2020 tempfile
+ -rwxr-xr-x 1 root root 108520 Sep 23 2020 touch
+ -rwxr-xr-x 1 root root 34664 Sep 23 2020 true
+ -rwxr-xr-x 1 root root 17768 Feb 27 06:12 ulockmgr_server
+ -rwsr-xr-x 1 root root 30236 Feb 8 04:38 umount
+ -rwxr-xr-x 1 root root 34664 Sep 23 2020 uname
+ -rwxr-xr-x 2 root root 2346 Mar 3 13:30 uncompress
+ -rwxr-xr-x 1 root root 153964 Sep 23 2020 vdir
+ -rwxr-xr-x 1 root root 63024 Feb 8 04:38 wdctl
+ lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname
+ -rwxr-xr-x 1 root root 1984 Mar 3 13:30 zcat
+ -rwxr-xr-x 1 root root 1678 Mar 3 13:30 zcmp
+ -rwxr-xr-x 1 root root 5880 Mar 3 13:30 zdiff
+ -rwxr-xr-x 1 root root 29 Mar 3 13:30 zegrep
+ -rwxr-xr-x 1 root root 29 Mar 3 13:30 zfgrep
+ -rwxr-xr-x 1 root root 2081 Mar 3 13:30 zforce
+ -rwxr-xr-x 1 root root 7585 Mar 3 13:30 zgrep
+ -rwxr-xr-x 1 root root 2206 Mar 3 13:30 zless
+ -rwxr-xr-x 1 root root 1842 Mar 3 13:30 zmore
+ -rwxr-xr-x 1 root root 4553 Mar 3 13:30 znew
+I: user script /srv/workspace/pbuilder/30957/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
@@ -233,7 +267,7 @@
Get: 29 http://deb.debian.org/debian bullseye/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get: 30 http://deb.debian.org/debian bullseye/main i386 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 31 http://deb.debian.org/debian bullseye/main i386 debhelper all 13.3.4 [1049 kB]
-Fetched 18.6 MB in 0s (81.2 MB/s)
+Fetched 18.6 MB in 6s (2875 kB/s)
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package bsdextrautils.
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
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(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 19675 files and directories currently installed.)
@@ -372,8 +406,44 @@
Writing extended state information...
Building tag database...
-> Finished parsing the build-deps
+Reading package lists...
+Building dependency tree...
+Reading state information...
+The following additional packages will be installed:
+ libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl
+The following NEW packages will be installed:
+ libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl usrmerge
+0 upgraded, 4 newly installed, 0 to remove and 0 not upgraded.
+Need to get 59.5 kB of archives.
+After this operation, 157 kB of additional disk space will be used.
+Get:1 http://deb.debian.org/debian bullseye/main i386 libnumber-compare-perl all 0.03-1.1 [6956 B]
+Get:2 http://deb.debian.org/debian bullseye/main i386 libtext-glob-perl all 0.11-1 [8888 B]
+Get:3 http://deb.debian.org/debian bullseye/main i386 libfile-find-rule-perl all 0.34-1 [30.6 kB]
+Get:4 http://deb.debian.org/debian bullseye/main i386 usrmerge all 25 [13.0 kB]
+debconf: delaying package configuration, since apt-utils is not installed
+Fetched 59.5 kB in 0s (3030 kB/s)
+Selecting previously unselected package libnumber-compare-perl.
+(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
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(Reading database ... 75%
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(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 21550 files and directories currently installed.)
+Preparing to unpack .../libnumber-compare-perl_0.03-1.1_all.deb ...
+Unpacking libnumber-compare-perl (0.03-1.1) ...
+Selecting previously unselected package libtext-glob-perl.
+Preparing to unpack .../libtext-glob-perl_0.11-1_all.deb ...
+Unpacking libtext-glob-perl (0.11-1) ...
+Selecting previously unselected package libfile-find-rule-perl.
+Preparing to unpack .../libfile-find-rule-perl_0.34-1_all.deb ...
+Unpacking libfile-find-rule-perl (0.34-1) ...
+Selecting previously unselected package usrmerge.
+Preparing to unpack .../archives/usrmerge_25_all.deb ...
+Unpacking usrmerge (25) ...
+Setting up libtext-glob-perl (0.11-1) ...
+Setting up libnumber-compare-perl (0.03-1.1) ...
+Setting up libfile-find-rule-perl (0.34-1) ...
+Setting up usrmerge (25) ...
+The system has been successfully converted.
+Processing triggers for man-db (2.9.4-2) ...
+Not building database; man-db/auto-update is not 'true'.
I: Building the package
-I: Running cd /build/dialign-t-1.0.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b
+I: Running cd /build/dialign-t-1.0.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b
dpkg-buildpackage: info: source package dialign-t
dpkg-buildpackage: info: source version 1.0.2-13
dpkg-buildpackage: info: source distribution unstable
@@ -383,7 +453,7 @@
debian/rules clean
dh clean --sourcedirectory=/build/dialign-t-1.0.2/source
dh_auto_clean -O--sourcedirectory=/build/dialign-t-1.0.2/source
- cd source && make -j18 clean
+ cd source && make -j10 clean
make[1]: Entering directory '/build/dialign-t-1.0.2/source'
rm -rf *.o *rtl *jump *addre* *cfg *life *reg *reload *flow* *stack museq dialign-tx
make[1]: Leaving directory '/build/dialign-t-1.0.2/source'
@@ -395,7 +465,7 @@
dh_autoreconf -O--sourcedirectory=/build/dialign-t-1.0.2/source
dh_auto_configure -O--sourcedirectory=/build/dialign-t-1.0.2/source
dh_auto_build -O--sourcedirectory=/build/dialign-t-1.0.2/source
- cd source && make -j18 "INSTALL=install --strip-program=true"
+ cd source && make -j10 "INSTALL=install --strip-program=true"
make[1]: Entering directory '/build/dialign-t-1.0.2/source'
gcc -g -O2 -fdebug-prefix-map=/build/dialign-t-1.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -mfpmath=sse -msse -mmmx -c -o museq.o museq.c
gcc -g -O2 -fdebug-prefix-map=/build/dialign-t-1.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -mfpmath=sse -msse -mmmx -c -o parameters.o parameters.c
@@ -406,29 +476,6 @@
gcc -g -O2 -fdebug-prefix-map=/build/dialign-t-1.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -mfpmath=sse -msse -mmmx -c -o prob.o prob.c
gcc -g -O2 -fdebug-prefix-map=/build/dialign-t-1.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -mfpmath=sse -msse -mmmx -c -o orf.o orf.c
gcc -g -O2 -fdebug-prefix-map=/build/dialign-t-1.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -mfpmath=sse -msse -mmmx -c -o translate.o translate.c
-museq.c: In function 'main':
-museq.c:168:2: warning: implicit declaration of function 'free_diag'; did you mean 'free_diag_col'? [-Wimplicit-function-declaration]
- 168 | free_diag(adcol.diags[i]);
- | ^~~~~~~~~
- | free_diag_col
-museq.c:278:27: warning: implicit declaration of function 'free_alignment' [-Wimplicit-function-declaration]
- 278 | if(! para->FAST_MODE) free_alignment(algn);
- | ^~~~~~~~~~~~~~
-alig.c:15:20: warning: inline function 'calc_ov_weight' declared but never defined
- 15 | extern inline void calc_ov_weight(struct diag* dg, struct diag_col *dcol, struct scr_matrix* smatrix,
- | ^~~~~~~~~~~~~~
-alig.c:13:20: warning: inline function 'calc_weight' declared but never defined
- 13 | extern inline void calc_weight(struct diag* dg, struct scr_matrix* smatrix,
- | ^~~~~~~~~~~
-assemble.c:37:32: warning: inline function 'find_eqc' declared but never defined
- 37 | extern inline struct algn_pos *find_eqc(struct algn_pos **ap, int seqnum, int pos);
- | ^~~~~~~~
-assemble.c:25:39: warning: inline function 'find_diags_guided' declared but never defined
- 25 | extern inline struct simple_diag_col* find_diags_guided(struct scr_matrix *smatrix,
- | ^~~~~~~~~~~~~~~~~
-assemble.c:15:20: warning: inline function 'calc_ov_weight' declared but never defined
- 15 | extern inline void calc_ov_weight(struct diag* dg, struct diag_col *dcol, struct scr_matrix* smatrix,
- | ^~~~~~~~~~~~~~
io.c: In function 'read_anchors':
io.c:535:23: warning: format '%li' expects argument of type 'long int *', but argument 3 has type 'int *' [-Wformat=]
535 | while( fscanf(fp,"%li %li %li %li %li %le\n",&s1,&s2,&sp1,&sp2,&len,&score ) == 6) {
@@ -460,9 +507,6 @@
| | |
| long int * int *
| %i
-diag.c:1456:3: warning: 'real_calc_weight' is static but used in inline function 'find_diags_dyn' which is not static
- 1456 | real_calc_weight(dg, smatrix, pdist,1,tmp_dist,algn);
- | ^~~~~~~~~~~~~~~~
io.c: In function 'read_scr_matrix':
io.c:270:3: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
270 | fscanf( fp, "%i", &is);
@@ -474,6 +518,32 @@
io.c:371:7: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
371 | fscanf( fp, "%li %li %Le\n", &ti,&tscr,&weight );
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+assemble.c:37:32: warning: inline function 'find_eqc' declared but never defined
+ 37 | extern inline struct algn_pos *find_eqc(struct algn_pos **ap, int seqnum, int pos);
+ | ^~~~~~~~
+assemble.c:25:39: warning: inline function 'find_diags_guided' declared but never defined
+ 25 | extern inline struct simple_diag_col* find_diags_guided(struct scr_matrix *smatrix,
+ | ^~~~~~~~~~~~~~~~~
+assemble.c:15:20: warning: inline function 'calc_ov_weight' declared but never defined
+ 15 | extern inline void calc_ov_weight(struct diag* dg, struct diag_col *dcol, struct scr_matrix* smatrix,
+ | ^~~~~~~~~~~~~~
+alig.c:15:20: warning: inline function 'calc_ov_weight' declared but never defined
+ 15 | extern inline void calc_ov_weight(struct diag* dg, struct diag_col *dcol, struct scr_matrix* smatrix,
+ | ^~~~~~~~~~~~~~
+alig.c:13:20: warning: inline function 'calc_weight' declared but never defined
+ 13 | extern inline void calc_weight(struct diag* dg, struct scr_matrix* smatrix,
+ | ^~~~~~~~~~~
+diag.c:1456:3: warning: 'real_calc_weight' is static but used in inline function 'find_diags_dyn' which is not static
+ 1456 | real_calc_weight(dg, smatrix, pdist,1,tmp_dist,algn);
+ | ^~~~~~~~~~~~~~~~
+museq.c: In function 'main':
+museq.c:168:2: warning: implicit declaration of function 'free_diag'; did you mean 'free_diag_col'? [-Wimplicit-function-declaration]
+ 168 | free_diag(adcol.diags[i]);
+ | ^~~~~~~~~
+ | free_diag_col
+museq.c:278:27: warning: implicit declaration of function 'free_alignment' [-Wimplicit-function-declaration]
+ 278 | if(! para->FAST_MODE) free_alignment(algn);
+ | ^~~~~~~~~~~~~~
rm -f ./museq
gcc -o ./museq \
./museq.o ./parameters.o ./io.o ./diag.o ./alig.o ./assemble.o ./prob.o ./orf.o ./translate.o \
@@ -509,8 +579,8 @@
dh_gencontrol -O--sourcedirectory=/build/dialign-t-1.0.2/source
dh_md5sums -O--sourcedirectory=/build/dialign-t-1.0.2/source
dh_builddeb -O--sourcedirectory=/build/dialign-t-1.0.2/source
-dpkg-deb: building package 'dialign-tx' in '../dialign-tx_1.0.2-13_i386.deb'.
dpkg-deb: building package 'dialign-tx-dbgsym' in '../dialign-tx-dbgsym_1.0.2-13_i386.deb'.
+dpkg-deb: building package 'dialign-tx' in '../dialign-tx_1.0.2-13_i386.deb'.
dpkg-deb: building package 'dialign-tx-data' in '../dialign-tx-data_1.0.2-13_all.deb'.
dpkg-genbuildinfo --build=binary
dpkg-genchanges --build=binary >../dialign-t_1.0.2-13_i386.changes
@@ -518,12 +588,14 @@
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
I: copying local configuration
+I: user script /srv/workspace/pbuilder/30957/tmp/hooks/B01_cleanup starting
+I: user script /srv/workspace/pbuilder/30957/tmp/hooks/B01_cleanup finished
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
-I: removing directory /srv/workspace/pbuilder/31935 and its subdirectories
-I: Current time: Fri Jul 22 18:23:00 -12 2022
-I: pbuilder-time-stamp: 1658557381
+I: removing directory /srv/workspace/pbuilder/30957 and its subdirectories
+I: Current time: Sun Jun 20 14:02:54 +14 2021
+I: pbuilder-time-stamp: 1624147374